ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags29i18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009204.1| Triticum aestivum clone wle1n.pk0036.e2:fis, full... 115 2e-22
2ref|NM_190983.1| Oryza sativa (japonica cultivar-group), predic... 90 1e-14
3dbj|AK111939.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 1e-14
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
5dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
6gb|AY104310.1| Zea mays PCO130346 mRNA sequence 64 6e-07
7gb|U10079.1|ZMU10079 Zea mays B73 cyclin IaZm mRNA, partial cds 60 9e-06
8gb|AY104904.1| Zea mays PCO136403 mRNA sequence 48 0.034
9gb|AC136452.4| Mus musculus BAC clone RP24-274L23 from chromosom... 44 0.53
10gb|AC173998.3| Mus musculus BAC clone RP24-446E18 from chromosom... 44 0.53
11gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten... 42 2.1
12gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ... 42 2.1
13gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten... 42 2.1
14gb|AC133574.15| Mus musculus strain C57BL/6J clone rp23-35b9, co... 42 2.1
15dbj|AK109955.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
16gb|AC123656.9| Mus musculus chromosome 15, clone RP23-188M21, co... 40 8.2
17gb|AC089994.2| Felis catus clone RP86-181L4, complete sequence 40 8.2
18gb|AC078855.13| Homo sapiens 3 BAC RP11-558M24 (Roswell Park Can... 40 8.2
19gb|AC073230.8| Homo sapiens BAC clone RP11-682N22 from 7, comple... 40 8.2
20emb|AL607043.12| Human DNA sequence from clone RP11-309P22 on ch... 40 8.2
21ref|XM_503942.1| Yarrowia lipolytica CLIB122, YALI0E14443g predi... 40 8.2
22emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotransgl... 40 8.2
23emb|AL596086.9| Mouse DNA sequence from clone RP23-168C20 on chr... 40 8.2
24dbj|AB247280.1| Camellia sinensis cycb mRNA for cyclin B, comple... 40 8.2
25gb|AC156984.9| Mus musculus chromosome 5, clone RP23-418H8, comp... 40 8.2
26dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
27gb|AC097457.2| Homo sapiens BAC clone RP11-3J1 from 4, complete ... 40 8.2
28gb|AC018366.39| Mus musculus strain 129/SvJ chromosome 5 clone m... 40 8.2
29dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 8.2
30emb|CT485616.11| Mouse DNA sequence from clone RP23-14H16 on chr... 40 8.2
31gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
32emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa... 40 8.2
33gb|AC147262.4| Mus musculus BAC clone RP24-211P15 from 3, comple... 40 8.2
34emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 40 8.2
35gb|AC079445.28| Mus musculus strain C57BL/6J chromosome 5 clone ... 40 8.2

>gb|BT009204.1| Triticum aestivum clone wle1n.pk0036.e2:fis, full insert mRNA
           sequence
          Length = 951

 Score =  115 bits (58), Expect = 2e-22
 Identities = 123/145 (84%)
 Strand = Plus / Minus

                                                                       
Query: 455 cggccttggcgaancgcacgaggaagacgtagagcgtgggcacagtcaggttccactcga 514
           ||||||||||||| | |||||||||||||||  | |||||||| |||||||||||||| |
Sbjct: 287 cggccttggcgaatcacacgaggaagacgtaaggtgtgggcactgtcaggttccactcaa 228

                                                                       
Query: 515 gcctgttgaggatcgccttctccatcttaagaatctgctccctcgtgtaggcgctgtcgg 574
           || |||| ||||| |||||||||||| | |||||||||||||| || || | | ||||||
Sbjct: 227 gcatgttcaggattgccttctccatcctcagaatctgctccctagtatatgtgttgtcgg 168

                                    
Query: 575 agataagtatgaaatcattcacctc 599
           |||  | |||||| || ||||||||
Sbjct: 167 agaacaatatgaagtcgttcacctc 143



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>ref|NM_190983.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1350

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 226/287 (78%)
 Strand = Plus / Minus

                                                                        
Query: 142  actcctccgagcttctcgctggagtacttcttgtagacgaccttcagcttgctgtcaggc 201
            |||||||| |||| ||| ||||| ||||||||||| || ||| |||||||||| ||||| 
Sbjct: 1313 actcctccaagctgctcactggaatacttcttgtacacaaccctcagcttgctctcaggg 1254

                                                                        
Query: 202  gcggtcgagtgcgaggccaccaggatcttggcggcatccatcagctgcgcttcagtgaag 261
            || || ||||||||||  || || | ||| || |  ||||  ||||| |  || || || 
Sbjct: 1253 gcagtagagtgcgaggtaacaagaagctttgcagagtccaatagctgtgactcggtaaat 1194

                                                                        
Query: 262  ccagtgtggtgcctcagggtgtcggtccacagcggggtcttgttgagggtgagcctggcg 321
            |||||||||||| | || ||||| ||||| || ||| |||| || |||||||||||||| 
Sbjct: 1193 ccagtgtggtgcttgagagtgtcagtccatagagggctcttcttcagggtgagcctggct 1134

                                                                        
Query: 322  gcgtagacagcagcggcggcgaccatggacggnttggactgcaccagcccgtactgcagg 381
            || |||||||||| ||| || ||| |||| ||   |||   |||||||||||||||||  
Sbjct: 1133 gcatagacagcagaggcagcaaccttggaaggcagggatgccaccagcccgtactgcatc 1074

                                                           
Query: 382  agcgccagctccgcgaagaagaagacggngttctccatctccttgtc 428
            || ||||  || |||||||||||| |   || |||||||||||||||
Sbjct: 1073 agtgccaattcagcgaagaagaaggccatgtgctccatctccttgtc 1027



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>dbj|AK111939.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-G01, full
           insert sequence
          Length = 1251

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 226/287 (78%)
 Strand = Plus / Minus

                                                                       
Query: 142 actcctccgagcttctcgctggagtacttcttgtagacgaccttcagcttgctgtcaggc 201
           |||||||| |||| ||| ||||| ||||||||||| || ||| |||||||||| ||||| 
Sbjct: 951 actcctccaagctgctcactggaatacttcttgtacacaaccctcagcttgctctcaggg 892

                                                                       
Query: 202 gcggtcgagtgcgaggccaccaggatcttggcggcatccatcagctgcgcttcagtgaag 261
           || || ||||||||||  || || | ||| || |  ||||  ||||| |  || || || 
Sbjct: 891 gcagtagagtgcgaggtaacaagaagctttgcagagtccaatagctgtgactcggtaaat 832

                                                                       
Query: 262 ccagtgtggtgcctcagggtgtcggtccacagcggggtcttgttgagggtgagcctggcg 321
           |||||||||||| | || ||||| ||||| || ||| |||| || |||||||||||||| 
Sbjct: 831 ccagtgtggtgcttgagagtgtcagtccatagagggctcttcttcagggtgagcctggct 772

                                                                       
Query: 322 gcgtagacagcagcggcggcgaccatggacggnttggactgcaccagcccgtactgcagg 381
           || |||||||||| ||| || ||| |||| ||   |||   |||||||||||||||||  
Sbjct: 771 gcatagacagcagaggcagcaaccttggaaggcagggatgccaccagcccgtactgcatc 712

                                                          
Query: 382 agcgccagctccgcgaagaagaagacggngttctccatctccttgtc 428
           || ||||  || |||||||||||| |   || |||||||||||||||
Sbjct: 711 agtgccaattcagcgaagaagaaggccatgtgctccatctccttgtc 665



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 116/144 (80%)
 Strand = Plus / Plus

                                                                            
Query: 262      ccagtgtggtgcctcagggtgtcggtccacagcggggtcttgttgagggtgagcctggcg 321
                |||||||||||| | || ||||| ||||| || ||| |||| || |||||||||||||| 
Sbjct: 34143233 ccagtgtggtgcttgagagtgtcagtccatagagggctcttcttcagggtgagcctggct 34143292

                                                                            
Query: 322      gcgtagacagcagcggcggcgaccatggacggnttggactgcaccagcccgtactgcagg 381
                || |||||||||| ||| || ||| |||| ||   |||   |||||||||||||||||  
Sbjct: 34143293 gcatagacagcagaggcagcaaccttggaaggcagggatgccaccagcccgtactgcatc 34143352

                                        
Query: 382      agcgccagctccgcgaagaagaag 405
                || ||||  || ||||||||||||
Sbjct: 34143353 agtgccaattcagcgaagaagaag 34143376



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 65/76 (85%)
 Strand = Plus / Plus

                                                                            
Query: 142      actcctccgagcttctcgctggagtacttcttgtagacgaccttcagcttgctgtcaggc 201
                |||||||| |||| ||| ||||| ||||||||||| || ||| |||||||||| ||||| 
Sbjct: 34143016 actcctccaagctgctcactggaatacttcttgtacacaaccctcagcttgctctcaggg 34143075

                                
Query: 202      gcggtcgagtgcgagg 217
                || || ||||||||||
Sbjct: 34143076 gcagtagagtgcgagg 34143091



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>dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0034E02
          Length = 165497

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 116/144 (80%)
 Strand = Plus / Plus

                                                                          
Query: 262    ccagtgtggtgcctcagggtgtcggtccacagcggggtcttgttgagggtgagcctggcg 321
              |||||||||||| | || ||||| ||||| || ||| |||| || |||||||||||||| 
Sbjct: 139711 ccagtgtggtgcttgagagtgtcagtccatagagggctcttcttcagggtgagcctggct 139770

                                                                          
Query: 322    gcgtagacagcagcggcggcgaccatggacggnttggactgcaccagcccgtactgcagg 381
              || |||||||||| ||| || ||| |||| ||   |||   |||||||||||||||||  
Sbjct: 139771 gcatagacagcagaggcagcaaccttggaaggcagggatgccaccagcccgtactgcatc 139830

                                      
Query: 382    agcgccagctccgcgaagaagaag 405
              || ||||  || ||||||||||||
Sbjct: 139831 agtgccaattcagcgaagaagaag 139854



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 65/76 (85%)
 Strand = Plus / Plus

                                                                          
Query: 142    actcctccgagcttctcgctggagtacttcttgtagacgaccttcagcttgctgtcaggc 201
              |||||||| |||| ||| ||||| ||||||||||| || ||| |||||||||| ||||| 
Sbjct: 139494 actcctccaagctgctcactggaatacttcttgtacacaaccctcagcttgctctcaggg 139553

                              
Query: 202    gcggtcgagtgcgagg 217
              || || ||||||||||
Sbjct: 139554 gcagtagagtgcgagg 139569



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>gb|AY104310.1| Zea mays PCO130346 mRNA sequence
          Length = 1970

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 86/104 (82%)
 Strand = Plus / Minus

                                                                        
Query: 496  acagtcaggttccactcgagcctgttgaggatcgccttctccatcttaagaatctgctcc 555
            ||||| ||||||||||| || || || |||||  |||||||||||  ||| |||||||||
Sbjct: 1228 acagtgaggttccactccaggctattcaggattcccttctccatcgaaaggatctgctcc 1169

                                                        
Query: 556  ctcgtgtaggcgctgtcggagataagtatgaaatcattcacctc 599
            ||  |||| || ||||| || ||||| |||||||| ||||||||
Sbjct: 1168 ctgctgtatgcactgtctgatataagaatgaaatcgttcacctc 1125



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 257  tgaagccagtgtggtgcctcagggtgtcggtccacagcggggtcttgttgagggtgagcc 316
            ||||||| ||||||||| | |||||||||||||| || || | | | ||||| |||||||
Sbjct: 1461 tgaagcccgtgtggtgcttgagggtgtcggtccagaggggagccctcttgagagtgagcc 1402

                          
Query: 317  tggcggcgtagaca 330
            |||| |||||||||
Sbjct: 1401 tggctgcgtagaca 1388



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 72/84 (85%), Gaps = 2/84 (2%)
 Strand = Plus / Minus

                                                                        
Query: 130  gggcgcagcgcgactcctccgagcttctcgctggagtacttcttgtagac-gaccttcag 188
            ||||| |||||||| ||||||| || ||| ||||| ||||||||||| || |||| ||||
Sbjct: 1594 gggcgaagcgcgacacctccgaactgctcactggaatacttcttgtatacagacc-tcag 1536

                                    
Query: 189  cttgctgtcaggcgcggtcgagtg 212
            |||||||||||  |||| ||||||
Sbjct: 1535 cttgctgtcagcggcggacgagtg 1512



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 370  ccgtactgcaggagcgccagctccgcgaagaagaagacggngttctccatctc 422
            ||||||||||  |||||||| || ||||||||||||||    |||||||||||
Sbjct: 1348 ccgtactgcatcagcgccagttcagcgaagaagaagaccatattctccatctc 1296



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>gb|U10079.1|ZMU10079 Zea mays B73 cyclin IaZm mRNA, partial cds
          Length = 1497

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 257  tgaagccagtgtggtgcctcagggtgtcggtccacagcggggtcttgttgagggtgagcc 316
            ||||||| ||||||||| | |||||||||||||| || || | | | ||||| |||||||
Sbjct: 1077 tgaagcccgtgtggtgcttgagggtgtcggtccagaggggagccctcttgagagtgagcc 1018

                          
Query: 317  tggcggcgtagaca 330
            |||| |||||||||
Sbjct: 1017 tggctgcgtagaca 1004



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 85/104 (81%)
 Strand = Plus / Minus

                                                                       
Query: 496 acagtcaggttccactcgagcctgttgaggatcgccttctccatcttaagaatctgctcc 555
           ||||| ||||||||||| ||  | || |||||  |||||||||||  ||| |||||||||
Sbjct: 844 acagtgaggttccactccaggttattcaggattcccttctccatcgaaaggatctgctcc 785

                                                       
Query: 556 ctcgtgtaggcgctgtcggagataagtatgaaatcattcacctc 599
           ||  |||| || ||||| || ||||| |||||||| ||||||||
Sbjct: 784 ctgctgtatgcactgtctgatataagaatgaaatcgttcacctc 741



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 156  ctcgctggagtacttcttgtagacgaccttcagcttgctgtcag 199
            ||||||||| ||||||||||| ||  || |||||||||||||||
Sbjct: 1187 ctcgctggaatacttcttgtatacagccctcagcttgctgtcag 1144



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 370 ccgtactgcaggagcgccagctccgcgaagaagaagacggngttctccatctc 422
           ||||||||||  |||||||| || ||||||||||||||    |||||||||||
Sbjct: 964 ccgtactgcatcagcgccagttcagcgaagaagaagaccatattctccatctc 912



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>gb|AY104904.1| Zea mays PCO136403 mRNA sequence
          Length = 1040

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 496 acagtcaggttccactcgagcctgttgaggatcgccttctccatcttaagaatctg 551
           ||||||||||||||||| ||||| || || ||  |||||||||||  |||||||||
Sbjct: 639 acagtcaggttccactccagcctattcagaattcccttctccatcgaaagaatctg 584



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>gb|AC136452.4| Mus musculus BAC clone RP24-274L23 from chromosome Y, complete sequence
          Length = 155057

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 412   ttctccatctccttgtcgttct 433
             ||||||||||||||||||||||
Sbjct: 53159 ttctccatctccttgtcgttct 53138



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>gb|AC173998.3| Mus musculus BAC clone RP24-446E18 from chromosome y, complete sequence
          Length = 142829

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 412   ttctccatctccttgtcgttct 433
             ||||||||||||||||||||||
Sbjct: 50414 ttctccatctccttgtcgttct 50435



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>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
              22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 71     gtcttgcaaaccaaaacaacaaaca 95
              |||||||||| ||||||||||||||
Sbjct: 109437 gtcttgcaaaacaaaacaacaaaca 109461



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>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 71    gtcttgcaaaccaaaacaacaaaca 95
             |||||||||| ||||||||||||||
Sbjct: 96027 gtcttgcaaaacaaaacaacaaaca 96051



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>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 71    gtcttgcaaaccaaaacaacaaaca 95
             |||||||||| ||||||||||||||
Sbjct: 97741 gtcttgcaaaacaaaacaacaaaca 97765



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>gb|AC133574.15| Mus musculus strain C57BL/6J clone rp23-35b9, complete sequence
          Length = 168432

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 71    gtcttgcaaaccaaaacaacaaaca 95
             |||||||||| ||||||||||||||
Sbjct: 27956 gtcttgcaaaacaaaacaacaaaca 27980



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>dbj|AK109955.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-A11, full
           insert sequence
          Length = 3826

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 329 cagcagcggcggcgaccatgg 349
           |||||||||||||||||||||
Sbjct: 74  cagcagcggcggcgaccatgg 54



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>gb|AC123656.9| Mus musculus chromosome 15, clone RP23-188M21, complete sequence
          Length = 200922

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 81    ccaaaacaacaaacagacgacaga 104
             ||||||||||||||||| ||||||
Sbjct: 82236 ccaaaacaacaaacagaagacaga 82213



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>gb|AC089994.2| Felis catus clone RP86-181L4, complete sequence
          Length = 142512

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    gaaatgtcagacaagccttc 55
             ||||||||||||||||||||
Sbjct: 86579 gaaatgtcagacaagccttc 86560



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>gb|AC078855.13| Homo sapiens 3 BAC RP11-558M24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 173849

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 70    agtcttgcaaaccaaaacaacaaa 93
             |||| |||||||||||||||||||
Sbjct: 36346 agtcctgcaaaccaaaacaacaaa 36323



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>gb|AC073230.8| Homo sapiens BAC clone RP11-682N22 from 7, complete sequence
          Length = 183523

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    caaaccaaaacaacaaacag 96
             ||||||||||||||||||||
Sbjct: 21720 caaaccaaaacaacaaacag 21739



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>emb|AL607043.12| Human DNA sequence from clone RP11-309P22 on chromosome 10 Contains a
             ribosomal protein S6 (RPS6) pseudogene, complete sequence
          Length = 169841

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 430   ttcttgtggtctgtggagga 449
             ||||||||||||||||||||
Sbjct: 69830 ttcttgtggtctgtggagga 69849



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>ref|XM_503942.1| Yarrowia lipolytica CLIB122, YALI0E14443g predicted mRNA
          Length = 1329

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 384 cgccagctccgcgaagaagaagac 407
           ||||||| ||||||||||||||||
Sbjct: 237 cgccagcaccgcgaagaagaagac 214



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>emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
          Length = 1110

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 330 agcagcggcggcgaccatgg 349
           ||||||||||||||||||||
Sbjct: 10  agcagcggcggcgaccatgg 29



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>emb|AL596086.9| Mouse DNA sequence from clone RP23-168C20 on chromosome 11 Contains the
             3' end of the Tex14 gene for testis expressed gene 14,
             complete sequence
          Length = 200501

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    caaaccaaaacaacaaacag 96
             ||||||||||||||||||||
Sbjct: 12824 caaaccaaaacaacaaacag 12805



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>dbj|AB247280.1| Camellia sinensis cycb mRNA for cyclin B, complete cds
          Length = 1323

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 526 atcgccttctccatcttaagaatctgctccct 557
           ||||||||||||||  |||||||||| |||||
Sbjct: 890 atcgccttctccatgataagaatctgttccct 859



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>gb|AC156984.9| Mus musculus chromosome 5, clone RP23-418H8, complete sequence
          Length = 171080

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    ccaagtcttgcaaaccaaaa 86
             ||||||||||||||||||||
Sbjct: 41589 ccaagtcttgcaaaccaaaa 41608



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 334      gcggcggcgaccatggacgg 353
                ||||||||||||||||||||
Sbjct: 23462084 gcggcggcgaccatggacgg 23462065



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>gb|AC097457.2| Homo sapiens BAC clone RP11-3J1 from 4, complete sequence
          Length = 120836

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    gcaaaccaaaacaacaaaca 95
             ||||||||||||||||||||
Sbjct: 19721 gcaaaccaaaacaacaaaca 19702



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>gb|AC018366.39| Mus musculus strain 129/SvJ chromosome 5 clone mgs1-458e5, complete
              sequence
          Length = 126143

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     ccaagtcttgcaaaccaaaa 86
              ||||||||||||||||||||
Sbjct: 119882 ccaagtcttgcaaaccaaaa 119863



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 322     gcgtagacagcagcggcggc 341
               ||||||||||||||||||||
Sbjct: 5215919 gcgtagacagcagcggcggc 5215938



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>emb|CT485616.11| Mouse DNA sequence from clone RP23-14H16 on chromosome 17, complete
             sequence
          Length = 163243

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    gcaaaccaaaacaacaaaca 95
             ||||||||||||||||||||
Sbjct: 43727 gcaaaccaaaacaacaaaca 43746



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 334      gcggcggcgaccatggacgg 353
                ||||||||||||||||||||
Sbjct: 23390275 gcggcggcgaccatggacgg 23390256



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>emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa0016C14 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 162261

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 334   gcggcggcgaccatggacgg 353
             ||||||||||||||||||||
Sbjct: 40075 gcggcggcgaccatggacgg 40094



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>gb|AC147262.4| Mus musculus BAC clone RP24-211P15 from 3, complete sequence
          Length = 168562

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    tgcaaaccaaaacaacaaac 94
             ||||||||||||||||||||
Sbjct: 21601 tgcaaaccaaaacaacaaac 21582



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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 384     cgccagctccgcgaagaagaagac 407
               ||||||| ||||||||||||||||
Sbjct: 1730118 cgccagcaccgcgaagaagaagac 1730141



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>gb|AC079445.28| Mus musculus strain C57BL/6J chromosome 5 clone rp23-403l21, complete
              sequence
          Length = 189517

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     ccaagtcttgcaaaccaaaa 86
              ||||||||||||||||||||
Sbjct: 121329 ccaagtcttgcaaaccaaaa 121348


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,856,080
Number of Sequences: 3902068
Number of extensions: 5856080
Number of successful extensions: 94402
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94172
Number of HSP's gapped (non-prelim): 225
length of query: 604
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 581
effective length of database: 17,143,297,704
effective search space: 9960255966024
effective search space used: 9960255966024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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