| Clone Name | rbags29i18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009204.1| Triticum aestivum clone wle1n.pk0036.e2:fis, full insert mRNA sequence Length = 951 Score = 115 bits (58), Expect = 2e-22 Identities = 123/145 (84%) Strand = Plus / Minus Query: 455 cggccttggcgaancgcacgaggaagacgtagagcgtgggcacagtcaggttccactcga 514 ||||||||||||| | ||||||||||||||| | |||||||| |||||||||||||| | Sbjct: 287 cggccttggcgaatcacacgaggaagacgtaaggtgtgggcactgtcaggttccactcaa 228 Query: 515 gcctgttgaggatcgccttctccatcttaagaatctgctccctcgtgtaggcgctgtcgg 574 || |||| ||||| |||||||||||| | |||||||||||||| || || | | |||||| Sbjct: 227 gcatgttcaggattgccttctccatcctcagaatctgctccctagtatatgtgttgtcgg 168 Query: 575 agataagtatgaaatcattcacctc 599 ||| | |||||| || |||||||| Sbjct: 167 agaacaatatgaagtcgttcacctc 143
>ref|NM_190983.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1350 Score = 89.7 bits (45), Expect = 1e-14 Identities = 226/287 (78%) Strand = Plus / Minus Query: 142 actcctccgagcttctcgctggagtacttcttgtagacgaccttcagcttgctgtcaggc 201 |||||||| |||| ||| ||||| ||||||||||| || ||| |||||||||| ||||| Sbjct: 1313 actcctccaagctgctcactggaatacttcttgtacacaaccctcagcttgctctcaggg 1254 Query: 202 gcggtcgagtgcgaggccaccaggatcttggcggcatccatcagctgcgcttcagtgaag 261 || || |||||||||| || || | ||| || | |||| ||||| | || || || Sbjct: 1253 gcagtagagtgcgaggtaacaagaagctttgcagagtccaatagctgtgactcggtaaat 1194 Query: 262 ccagtgtggtgcctcagggtgtcggtccacagcggggtcttgttgagggtgagcctggcg 321 |||||||||||| | || ||||| ||||| || ||| |||| || |||||||||||||| Sbjct: 1193 ccagtgtggtgcttgagagtgtcagtccatagagggctcttcttcagggtgagcctggct 1134 Query: 322 gcgtagacagcagcggcggcgaccatggacggnttggactgcaccagcccgtactgcagg 381 || |||||||||| ||| || ||| |||| || ||| ||||||||||||||||| Sbjct: 1133 gcatagacagcagaggcagcaaccttggaaggcagggatgccaccagcccgtactgcatc 1074 Query: 382 agcgccagctccgcgaagaagaagacggngttctccatctccttgtc 428 || |||| || |||||||||||| | || ||||||||||||||| Sbjct: 1073 agtgccaattcagcgaagaagaaggccatgtgctccatctccttgtc 1027
>dbj|AK111939.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-G01, full insert sequence Length = 1251 Score = 89.7 bits (45), Expect = 1e-14 Identities = 226/287 (78%) Strand = Plus / Minus Query: 142 actcctccgagcttctcgctggagtacttcttgtagacgaccttcagcttgctgtcaggc 201 |||||||| |||| ||| ||||| ||||||||||| || ||| |||||||||| ||||| Sbjct: 951 actcctccaagctgctcactggaatacttcttgtacacaaccctcagcttgctctcaggg 892 Query: 202 gcggtcgagtgcgaggccaccaggatcttggcggcatccatcagctgcgcttcagtgaag 261 || || |||||||||| || || | ||| || | |||| ||||| | || || || Sbjct: 891 gcagtagagtgcgaggtaacaagaagctttgcagagtccaatagctgtgactcggtaaat 832 Query: 262 ccagtgtggtgcctcagggtgtcggtccacagcggggtcttgttgagggtgagcctggcg 321 |||||||||||| | || ||||| ||||| || ||| |||| || |||||||||||||| Sbjct: 831 ccagtgtggtgcttgagagtgtcagtccatagagggctcttcttcagggtgagcctggct 772 Query: 322 gcgtagacagcagcggcggcgaccatggacggnttggactgcaccagcccgtactgcagg 381 || |||||||||| ||| || ||| |||| || ||| ||||||||||||||||| Sbjct: 771 gcatagacagcagaggcagcaaccttggaaggcagggatgccaccagcccgtactgcatc 712 Query: 382 agcgccagctccgcgaagaagaagacggngttctccatctccttgtc 428 || |||| || |||||||||||| | || ||||||||||||||| Sbjct: 711 agtgccaattcagcgaagaagaaggccatgtgctccatctccttgtc 665
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 65.9 bits (33), Expect = 1e-07 Identities = 116/144 (80%) Strand = Plus / Plus Query: 262 ccagtgtggtgcctcagggtgtcggtccacagcggggtcttgttgagggtgagcctggcg 321 |||||||||||| | || ||||| ||||| || ||| |||| || |||||||||||||| Sbjct: 34143233 ccagtgtggtgcttgagagtgtcagtccatagagggctcttcttcagggtgagcctggct 34143292 Query: 322 gcgtagacagcagcggcggcgaccatggacggnttggactgcaccagcccgtactgcagg 381 || |||||||||| ||| || ||| |||| || ||| ||||||||||||||||| Sbjct: 34143293 gcatagacagcagaggcagcaaccttggaaggcagggatgccaccagcccgtactgcatc 34143352 Query: 382 agcgccagctccgcgaagaagaag 405 || |||| || |||||||||||| Sbjct: 34143353 agtgccaattcagcgaagaagaag 34143376 Score = 63.9 bits (32), Expect = 6e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 142 actcctccgagcttctcgctggagtacttcttgtagacgaccttcagcttgctgtcaggc 201 |||||||| |||| ||| ||||| ||||||||||| || ||| |||||||||| ||||| Sbjct: 34143016 actcctccaagctgctcactggaatacttcttgtacacaaccctcagcttgctctcaggg 34143075 Query: 202 gcggtcgagtgcgagg 217 || || |||||||||| Sbjct: 34143076 gcagtagagtgcgagg 34143091
>dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034E02 Length = 165497 Score = 65.9 bits (33), Expect = 1e-07 Identities = 116/144 (80%) Strand = Plus / Plus Query: 262 ccagtgtggtgcctcagggtgtcggtccacagcggggtcttgttgagggtgagcctggcg 321 |||||||||||| | || ||||| ||||| || ||| |||| || |||||||||||||| Sbjct: 139711 ccagtgtggtgcttgagagtgtcagtccatagagggctcttcttcagggtgagcctggct 139770 Query: 322 gcgtagacagcagcggcggcgaccatggacggnttggactgcaccagcccgtactgcagg 381 || |||||||||| ||| || ||| |||| || ||| ||||||||||||||||| Sbjct: 139771 gcatagacagcagaggcagcaaccttggaaggcagggatgccaccagcccgtactgcatc 139830 Query: 382 agcgccagctccgcgaagaagaag 405 || |||| || |||||||||||| Sbjct: 139831 agtgccaattcagcgaagaagaag 139854 Score = 63.9 bits (32), Expect = 6e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 142 actcctccgagcttctcgctggagtacttcttgtagacgaccttcagcttgctgtcaggc 201 |||||||| |||| ||| ||||| ||||||||||| || ||| |||||||||| ||||| Sbjct: 139494 actcctccaagctgctcactggaatacttcttgtacacaaccctcagcttgctctcaggg 139553 Query: 202 gcggtcgagtgcgagg 217 || || |||||||||| Sbjct: 139554 gcagtagagtgcgagg 139569
>gb|AY104310.1| Zea mays PCO130346 mRNA sequence Length = 1970 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 496 acagtcaggttccactcgagcctgttgaggatcgccttctccatcttaagaatctgctcc 555 ||||| ||||||||||| || || || ||||| ||||||||||| ||| ||||||||| Sbjct: 1228 acagtgaggttccactccaggctattcaggattcccttctccatcgaaaggatctgctcc 1169 Query: 556 ctcgtgtaggcgctgtcggagataagtatgaaatcattcacctc 599 || |||| || ||||| || ||||| |||||||| |||||||| Sbjct: 1168 ctgctgtatgcactgtctgatataagaatgaaatcgttcacctc 1125 Score = 60.0 bits (30), Expect = 9e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 257 tgaagccagtgtggtgcctcagggtgtcggtccacagcggggtcttgttgagggtgagcc 316 ||||||| ||||||||| | |||||||||||||| || || | | | ||||| ||||||| Sbjct: 1461 tgaagcccgtgtggtgcttgagggtgtcggtccagaggggagccctcttgagagtgagcc 1402 Query: 317 tggcggcgtagaca 330 |||| ||||||||| Sbjct: 1401 tggctgcgtagaca 1388 Score = 56.0 bits (28), Expect = 1e-04 Identities = 72/84 (85%), Gaps = 2/84 (2%) Strand = Plus / Minus Query: 130 gggcgcagcgcgactcctccgagcttctcgctggagtacttcttgtagac-gaccttcag 188 ||||| |||||||| ||||||| || ||| ||||| ||||||||||| || |||| |||| Sbjct: 1594 gggcgaagcgcgacacctccgaactgctcactggaatacttcttgtatacagacc-tcag 1536 Query: 189 cttgctgtcaggcgcggtcgagtg 212 ||||||||||| |||| |||||| Sbjct: 1535 cttgctgtcagcggcggacgagtg 1512 Score = 44.1 bits (22), Expect = 0.53 Identities = 45/53 (84%) Strand = Plus / Minus Query: 370 ccgtactgcaggagcgccagctccgcgaagaagaagacggngttctccatctc 422 |||||||||| |||||||| || |||||||||||||| ||||||||||| Sbjct: 1348 ccgtactgcatcagcgccagttcagcgaagaagaagaccatattctccatctc 1296
>gb|U10079.1|ZMU10079 Zea mays B73 cyclin IaZm mRNA, partial cds Length = 1497 Score = 60.0 bits (30), Expect = 9e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 257 tgaagccagtgtggtgcctcagggtgtcggtccacagcggggtcttgttgagggtgagcc 316 ||||||| ||||||||| | |||||||||||||| || || | | | ||||| ||||||| Sbjct: 1077 tgaagcccgtgtggtgcttgagggtgtcggtccagaggggagccctcttgagagtgagcc 1018 Query: 317 tggcggcgtagaca 330 |||| ||||||||| Sbjct: 1017 tggctgcgtagaca 1004 Score = 56.0 bits (28), Expect = 1e-04 Identities = 85/104 (81%) Strand = Plus / Minus Query: 496 acagtcaggttccactcgagcctgttgaggatcgccttctccatcttaagaatctgctcc 555 ||||| ||||||||||| || | || ||||| ||||||||||| ||| ||||||||| Sbjct: 844 acagtgaggttccactccaggttattcaggattcccttctccatcgaaaggatctgctcc 785 Query: 556 ctcgtgtaggcgctgtcggagataagtatgaaatcattcacctc 599 || |||| || ||||| || ||||| |||||||| |||||||| Sbjct: 784 ctgctgtatgcactgtctgatataagaatgaaatcgttcacctc 741 Score = 48.1 bits (24), Expect = 0.034 Identities = 39/44 (88%) Strand = Plus / Minus Query: 156 ctcgctggagtacttcttgtagacgaccttcagcttgctgtcag 199 ||||||||| ||||||||||| || || ||||||||||||||| Sbjct: 1187 ctcgctggaatacttcttgtatacagccctcagcttgctgtcag 1144 Score = 44.1 bits (22), Expect = 0.53 Identities = 45/53 (84%) Strand = Plus / Minus Query: 370 ccgtactgcaggagcgccagctccgcgaagaagaagacggngttctccatctc 422 |||||||||| |||||||| || |||||||||||||| ||||||||||| Sbjct: 964 ccgtactgcatcagcgccagttcagcgaagaagaagaccatattctccatctc 912
>gb|AY104904.1| Zea mays PCO136403 mRNA sequence Length = 1040 Score = 48.1 bits (24), Expect = 0.034 Identities = 48/56 (85%) Strand = Plus / Minus Query: 496 acagtcaggttccactcgagcctgttgaggatcgccttctccatcttaagaatctg 551 ||||||||||||||||| ||||| || || || ||||||||||| ||||||||| Sbjct: 639 acagtcaggttccactccagcctattcagaattcccttctccatcgaaagaatctg 584
>gb|AC136452.4| Mus musculus BAC clone RP24-274L23 from chromosome Y, complete sequence Length = 155057 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 412 ttctccatctccttgtcgttct 433 |||||||||||||||||||||| Sbjct: 53159 ttctccatctccttgtcgttct 53138
>gb|AC173998.3| Mus musculus BAC clone RP24-446E18 from chromosome y, complete sequence Length = 142829 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 412 ttctccatctccttgtcgttct 433 |||||||||||||||||||||| Sbjct: 50414 ttctccatctccttgtcgttct 50435
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 gtcttgcaaaccaaaacaacaaaca 95 |||||||||| |||||||||||||| Sbjct: 109437 gtcttgcaaaacaaaacaacaaaca 109461
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 gtcttgcaaaccaaaacaacaaaca 95 |||||||||| |||||||||||||| Sbjct: 96027 gtcttgcaaaacaaaacaacaaaca 96051
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 gtcttgcaaaccaaaacaacaaaca 95 |||||||||| |||||||||||||| Sbjct: 97741 gtcttgcaaaacaaaacaacaaaca 97765
>gb|AC133574.15| Mus musculus strain C57BL/6J clone rp23-35b9, complete sequence Length = 168432 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 gtcttgcaaaccaaaacaacaaaca 95 |||||||||| |||||||||||||| Sbjct: 27956 gtcttgcaaaacaaaacaacaaaca 27980
>dbj|AK109955.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-A11, full insert sequence Length = 3826 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 cagcagcggcggcgaccatgg 349 ||||||||||||||||||||| Sbjct: 74 cagcagcggcggcgaccatgg 54
>gb|AC123656.9| Mus musculus chromosome 15, clone RP23-188M21, complete sequence Length = 200922 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 81 ccaaaacaacaaacagacgacaga 104 ||||||||||||||||| |||||| Sbjct: 82236 ccaaaacaacaaacagaagacaga 82213
>gb|AC089994.2| Felis catus clone RP86-181L4, complete sequence Length = 142512 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 gaaatgtcagacaagccttc 55 |||||||||||||||||||| Sbjct: 86579 gaaatgtcagacaagccttc 86560
>gb|AC078855.13| Homo sapiens 3 BAC RP11-558M24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 173849 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 70 agtcttgcaaaccaaaacaacaaa 93 |||| ||||||||||||||||||| Sbjct: 36346 agtcctgcaaaccaaaacaacaaa 36323
>gb|AC073230.8| Homo sapiens BAC clone RP11-682N22 from 7, complete sequence Length = 183523 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 caaaccaaaacaacaaacag 96 |||||||||||||||||||| Sbjct: 21720 caaaccaaaacaacaaacag 21739
>emb|AL607043.12| Human DNA sequence from clone RP11-309P22 on chromosome 10 Contains a ribosomal protein S6 (RPS6) pseudogene, complete sequence Length = 169841 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 ttcttgtggtctgtggagga 449 |||||||||||||||||||| Sbjct: 69830 ttcttgtggtctgtggagga 69849
>ref|XM_503942.1| Yarrowia lipolytica CLIB122, YALI0E14443g predicted mRNA Length = 1329 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 384 cgccagctccgcgaagaagaagac 407 ||||||| |||||||||||||||| Sbjct: 237 cgccagcaccgcgaagaagaagac 214
>emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotransglycosylase-like protein Length = 1110 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 agcagcggcggcgaccatgg 349 |||||||||||||||||||| Sbjct: 10 agcagcggcggcgaccatgg 29
>emb|AL596086.9| Mouse DNA sequence from clone RP23-168C20 on chromosome 11 Contains the 3' end of the Tex14 gene for testis expressed gene 14, complete sequence Length = 200501 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 caaaccaaaacaacaaacag 96 |||||||||||||||||||| Sbjct: 12824 caaaccaaaacaacaaacag 12805
>dbj|AB247280.1| Camellia sinensis cycb mRNA for cyclin B, complete cds Length = 1323 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 526 atcgccttctccatcttaagaatctgctccct 557 |||||||||||||| |||||||||| ||||| Sbjct: 890 atcgccttctccatgataagaatctgttccct 859
>gb|AC156984.9| Mus musculus chromosome 5, clone RP23-418H8, complete sequence Length = 171080 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 ccaagtcttgcaaaccaaaa 86 |||||||||||||||||||| Sbjct: 41589 ccaagtcttgcaaaccaaaa 41608
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 gcggcggcgaccatggacgg 353 |||||||||||||||||||| Sbjct: 23462084 gcggcggcgaccatggacgg 23462065
>gb|AC097457.2| Homo sapiens BAC clone RP11-3J1 from 4, complete sequence Length = 120836 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 gcaaaccaaaacaacaaaca 95 |||||||||||||||||||| Sbjct: 19721 gcaaaccaaaacaacaaaca 19702
>gb|AC018366.39| Mus musculus strain 129/SvJ chromosome 5 clone mgs1-458e5, complete sequence Length = 126143 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 ccaagtcttgcaaaccaaaa 86 |||||||||||||||||||| Sbjct: 119882 ccaagtcttgcaaaccaaaa 119863
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 gcgtagacagcagcggcggc 341 |||||||||||||||||||| Sbjct: 5215919 gcgtagacagcagcggcggc 5215938
>emb|CT485616.11| Mouse DNA sequence from clone RP23-14H16 on chromosome 17, complete sequence Length = 163243 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gcaaaccaaaacaacaaaca 95 |||||||||||||||||||| Sbjct: 43727 gcaaaccaaaacaacaaaca 43746
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 gcggcggcgaccatggacgg 353 |||||||||||||||||||| Sbjct: 23390275 gcggcggcgaccatggacgg 23390256
>emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa0016C14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 162261 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 gcggcggcgaccatggacgg 353 |||||||||||||||||||| Sbjct: 40075 gcggcggcgaccatggacgg 40094
>gb|AC147262.4| Mus musculus BAC clone RP24-211P15 from 3, complete sequence Length = 168562 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcaaaccaaaacaacaaac 94 |||||||||||||||||||| Sbjct: 21601 tgcaaaccaaaacaacaaac 21582
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 384 cgccagctccgcgaagaagaagac 407 ||||||| |||||||||||||||| Sbjct: 1730118 cgccagcaccgcgaagaagaagac 1730141
>gb|AC079445.28| Mus musculus strain C57BL/6J chromosome 5 clone rp23-403l21, complete sequence Length = 189517 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 ccaagtcttgcaaaccaaaa 86 |||||||||||||||||||| Sbjct: 121329 ccaagtcttgcaaaccaaaa 121348 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,856,080 Number of Sequences: 3902068 Number of extensions: 5856080 Number of successful extensions: 94402 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94172 Number of HSP's gapped (non-prelim): 225 length of query: 604 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 581 effective length of database: 17,143,297,704 effective search space: 9960255966024 effective search space used: 9960255966024 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)