ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags29h23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK059573.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A04, full insert sequence Length = 1843 Score = 714 bits (360), Expect = 0.0 Identities = 513/564 (90%) Strand = Plus / Minus Query: 15 aaccttatcctcaaatgctcagcaatgtccttctcatcaacattacacattattttctcc 74 |||||||||| |||||||||||| |||||||| ||||||||||||||||||||||| ||| Sbjct: 1842 aaccttatccgcaaatgctcagcgatgtccttttcatcaacattacacattattttatcc 1783 Query: 75 ttgtcgctctcacgaatatatacaagcatgtaggcatttgaatactttgtgaacttaaat 134 |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| Sbjct: 1782 ttgtcgctctcacgaatatagacaagcatgtaggcattcgaatactttgtgaatttaaat 1723 Query: 135 ggggtgttattgaaaccagggttaacttgaggtaactcttcctcgcccccgtactgctct 194 ||||||||||||||||||||||| | |||||| |||||||| || ||||| ||||||||| Sbjct: 1722 ggggtgttattgaaaccagggtttatttgaggcaactcttcttcacccccatactgctct 1663 Query: 195 tcaagcgcctttttagtatcttcttttgttactcgctcgtcatcaaatttataccactgg 254 ||||| || ||||| |||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 1662 tcaagggcttttttggtatcttcttttgttactcgttcatcatcaaatttataccactgg 1603 Query: 255 tctgagagtgtaggtcgtatgaaagcgtagtagtgaccaccatgtactcctccactatga 314 ||||| || ||||| ||||||||||| ||||||||||| |||||||||||||| |||||| Sbjct: 1602 tctgatagcgtaggccgtatgaaagcatagtagtgaccgccatgtactcctccgctatga 1543 Query: 315 acaagaacactgtggagagtgtaaaggttcctaatacttctatctgcatctggagtaaga 374 |||||||||||||| |||||||||||||| ||||| |||||||||||||| |||| |||| Sbjct: 1542 acaagaacactgtgaagagtgtaaaggtttctaatgcttctatctgcatcaggagcaaga 1483 Query: 375 tattttccatcatccttatcaagatcgagttgtagcgggaactcataacggtcattaatc 434 ||||| |||||||| | |||||||| ||||| || ||||||||||| |||||||||||| Sbjct: 1482 tatttcccatcatctctgtcaagatcaagttgaagtgggaactcataccggtcattaatc 1423 Query: 435 ttaaccattgtatctcgcatgtaatcatattcgaaacgcttcagttgaagttgcaaaaca 494 || ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct: 1422 ttgaccattgtatctcgcatgtaatcatattcaaaacgcttcagttgaagttgcgaaaca 1363 Query: 495 ggggggaaatcaagaaagagtacgccctttcttgcatcctgtaagccatgttgttcagcc 554 || ||||||||||| |||||||| ||||| |||||||||||||||||| || || || Sbjct: 1362 ggagggaaatcaaggaagagtactcccttctttgcatcctgtaagccatactgctctgca 1303 Query: 555 tggtatttgttatcaccctctaga 578 || ||||||||||||||||||||| Sbjct: 1302 tgatatttgttatcaccctctaga 1279
>dbj|AK067123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096M22, full insert sequence Length = 3975 Score = 289 bits (146), Expect = 5e-75 Identities = 224/249 (89%), Gaps = 1/249 (0%) Strand = Plus / Minus Query: 1 ttgttctttncttnaaccttatcctcaaatgctcagcaatgtccttctcatcaacattac 60 ||||||||| ||| ||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct: 1644 ttgttcttt-cttcaaccttacccttaaatgctcagcaatgtccttctcatcaacattac 1586 Query: 61 acattattttctccttgtcgctctcacgaatatatacaagcatgtaggcatttgaatact 120 |||||||||| ||||| || |||||||| || || ||||||||||||||||||||||||| Sbjct: 1585 acattattttgtccttatcactctcacggatgtagacaagcatgtaggcatttgaatact 1526 Query: 121 ttgtgaacttaaatggggtgttattgaaaccagggttaacttgaggtaactcttcctcgc 180 ||||||| |||||||| | ||| ||||||||||| || | |||||| ||||||||||| | Sbjct: 1525 ttgtgaatttaaatggagcgttgttgaaaccaggatttatttgaggcaactcttcctcac 1466 Query: 181 ccccgtactgctcttcaagcgcctttttagtatcttcttttgttactcgctcgtcatcaa 240 ||||||| ||||||||||| ||||| |||||||||||||| ||||| ||||| ||||||| Sbjct: 1465 ccccgtattgctcttcaagggccttcttagtatcttctttagttacgcgctcatcatcaa 1406 Query: 241 atttatacc 249 ||||||||| Sbjct: 1405 atttatacc 1397 Score = 274 bits (138), Expect = 3e-70 Identities = 243/278 (87%) Strand = Plus / Minus Query: 267 ggtcgtatgaaagcgtagtagtgaccaccatgtactcctccactatgaacaagaacactg 326 ||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 856 ggtcgaatgaaggcatagtagtgaccgccatgtactcctccactatgaacaagaacactg 797 Query: 327 tggagagtgtaaaggttcctaatacttctatctgcatctggagtaagatattttccatca 386 || |||| |||||||| || |||||||||||||||||||||| |||||||||||||||| Sbjct: 796 tgaagagcataaaggtttcttatacttctatctgcatctggagcaagatattttccatca 737 Query: 387 tccttatcaagatcgagttgtagcgggaactcataacggtcattaatcttaaccattgta 446 || |||| | ||| ||||| | ||||| ||||| |||||||||||||||||||| ||| Sbjct: 736 tctctatccaaatcaagttgcaaagggaaatcatagcggtcattaatcttaaccatggta 677 Query: 447 tctcgcatgtaatcatattcgaaacgcttcagttgaagttgcaaaacaggggggaaatca 506 |||| ||| || || || || |||||||||||||||||||||||||| |||||||||||| Sbjct: 676 tctctcatatagtcgtactcaaaacgcttcagttgaagttgcaaaactggggggaaatca 617 Query: 507 agaaagagtacgccctttcttgcatcctgtaagccatg 544 || || || || |||||| | ||||||||||| ||||| Sbjct: 616 aggaacagaacaccctttttcgcatcctgtaaaccatg 579
>ref|XM_476711.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3351 Score = 256 bits (129), Expect = 7e-65 Identities = 387/473 (81%) Strand = Plus / Minus Query: 30 tgctcagcaatgtccttctcatcaacattacacattattttctccttgtcgctctcacga 89 ||||| || |||||||||||||| || ||||| |||||||| |||||||| || || ||| Sbjct: 1634 tgctctgctatgtccttctcatccacgttacaaattattttgtccttgtcactttcgcga 1575 Query: 90 atatatacaagcatgtaggcatttgaatactttgtgaacttaaatggggtgttattgaaa 149 || || ||||||||||| || |||||||| || |||||||| || || || || || | | Sbjct: 1574 atgtacacaagcatgtatgcgtttgaatatttagtgaacttgaaaggagtattgtttaga 1515 Query: 150 ccagggttaacttgaggtaactcttcctcgcccccgtactgctcttcaagcgccttttta 209 ||||| ||| ||||||| ||| ||||| || || || |||||||| | ||| | || Sbjct: 1514 ccaggattagtctgaggtagctcctcctcaccaccatattgctcttccaatgccctcttt 1455 Query: 210 gtatcttcttttgttactcgctcgtcatcaaatttataccactggtctgagagtgtaggt 269 | ||| ||||||||||| ||||| |||||||| ||| ||||||| || || || ||||| Sbjct: 1454 gcatcctcttttgttacacgctcatcatcaaacttaaaccactgatcagaaagagtaggc 1395 Query: 270 cgtatgaaagcgtagtagtgaccaccatgtactcctccactatgaacaagaacactgtgg 329 ||||||||||| ||||| || |||||||| || || |||||||| || ||||||||||| Sbjct: 1394 cgtatgaaagcatagtaatgcccaccatgaacacccccactatggacgagaacactgtga 1335 Query: 330 agagtgtaaaggttcctaatacttctatctgcatctggagtaagatattttccatcatcc 389 ||||||||||| |||| | | | |||||||||||||||| || || ||||||||||| Sbjct: 1334 agagtgtaaagattccgcacattcctatctgcatctggagagaggtactttccatcatct 1275 Query: 390 ttatcaagatcgagttgtagcgggaactcataacggtcattaatcttaaccattgtatct 449 |||||||||| | || | |||||||||||| |||||||| ||||| ||||||||||| Sbjct: 1274 ctatcaagatccaactgaatcgggaactcatagcggtcatttatctttaccattgtatca 1215 Query: 450 cgcatgtaatcatattcgaaacgcttcagttgaagttgcaaaacaggggggaa 502 |||||| |||||||||| || || || || ||||||||||||||||| ||||| Sbjct: 1214 cgcatgaaatcatattcaaagcgttttagctgaagttgcaaaacaggagggaa 1162
>gb|AY107638.1| Zea mays PCO130245 mRNA sequence Length = 789 Score = 228 bits (115), Expect = 2e-56 Identities = 193/219 (88%) Strand = Plus / Minus Query: 360 gcatctggagtaagatattttccatcatccttatcaagatcgagttgtagcgggaactca 419 |||||||||| ||||||||||||| || |||||||||| ||||| || ||||||||| Sbjct: 789 gcatctggagatagatattttccattgtctctatcaagatcaagttgaagagggaactca 730 Query: 420 taacggtcattaatcttaaccattgtatctcgcatgtaatcatattcgaaacgcttcagt 479 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 729 tagcggtcattaatcttaaccattgtatctcgcatgtaatcatattcaaaacgcttcagt 670 Query: 480 tgaagttgcaaaacaggggggaaatcaagaaagagtacgccctttcttgcatcctgtaag 539 ||||| ||||||||||| ||||||||||| || || || || || ||||||||||||||| Sbjct: 669 tgaagctgcaaaacaggagggaaatcaaggaaaagcacacctttccttgcatcctgtaag 610 Query: 540 ccatgttgttcagcctggtatttgttatcaccctctaga 578 |||| | || || ||||| |||||||||||||||||| Sbjct: 609 ccataacgctccgcatggtacttgttatcaccctctaga 571
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 220 bits (111), Expect = 4e-54 Identities = 141/151 (93%) Strand = Plus / Minus Query: 26 caaatgctcagcaatgtccttctcatcaacattacacattattttctccttgtcgctctc 85 |||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 18383270 caaatgctcagcgatgtccttttcatcaacattacacattattttatccttgtcgctctc 18383211 Query: 86 acgaatatatacaagcatgtaggcatttgaatactttgtgaacttaaatggggtgttatt 145 ||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 18383210 acgaatatagacaagcatgtaggcattcgaatactttgtgaatttaaatggggtgttatt 18383151 Query: 146 gaaaccagggttaacttgaggtaactcttcc 176 |||||||||||| | |||||| |||| |||| Sbjct: 18383150 gaaaccagggtttatttgaggcaactgttcc 18383120 Score = 147 bits (74), Expect = 5e-32 Identities = 92/98 (93%) Strand = Plus / Minus Query: 438 accattgtatctcgcatgtaatcatattcgaaacgcttcagttgaagttgcaaaacaggg 497 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 18380029 accattgtatctcgcatgtaatcatattcaaaacgcttcagttgaagttgcaaaacagga 18379970 Query: 498 gggaaatcaagaaagagtacgccctttcttgcatcctg 535 ||||||||||| |||||||| ||||| |||||||||| Sbjct: 18379969 gggaaatcaaggaagagtactcccttctttgcatcctg 18379932 Score = 119 bits (60), Expect = 1e-23 Identities = 99/112 (88%) Strand = Plus / Minus Query: 324 ctgtggagagtgtaaaggttcctaatacttctatctgcatctggagtaagatattttcca 383 ||||| |||||||||||||| ||||| |||||||||||||| |||| ||||||||| ||| Sbjct: 18381556 ctgtgaagagtgtaaaggtttctaatgcttctatctgcatcaggagcaagatatttccca 18381497 Query: 384 tcatccttatcaagatcgagttgtagcgggaactcataacggtcattaatct 435 ||||| | |||||||| ||||| || ||||||||||| ||||||||||||| Sbjct: 18381496 tcatctctgtcaagatcaagttgaagtgggaactcataccggtcattaatct 18381445 Score = 111 bits (56), Expect = 3e-21 Identities = 74/80 (92%) Strand = Plus / Minus Query: 247 accactggtctgagagtgtaggtcgtatgaaagcgtagtagtgaccaccatgtactcctc 306 ||||||||||||| || ||||| ||||||||||| ||||||||||| ||||||||||||| Sbjct: 18382069 accactggtctgatagcgtaggccgtatgaaagcatagtagtgaccgccatgtactcctc 18382010 Query: 307 cactatgaacaagaacactg 326 | |||||||||||||||||| Sbjct: 18382009 cgctatgaacaagaacactg 18381990 Score = 95.6 bits (48), Expect = 2e-16 Identities = 72/80 (90%) Strand = Plus / Minus Query: 170 ctcttcctcgcccccgtactgctcttcaagcgcctttttagtatcttcttttgttactcg 229 |||||| || ||||| |||||||||||||| || ||||| |||||||||||||||||||| Sbjct: 18383006 ctcttcttcacccccatactgctcttcaagggcttttttggtatcttcttttgttactcg 18382947 Query: 230 ctcgtcatcaaatttatacc 249 || |||||||||||||||| Sbjct: 18382946 ttcatcatcaaatttatacc 18382927 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Minus Query: 532 cctgtaagccatgttgttcagcctggtatttgttatcaccctctaga 578 |||||||||||| || || || || ||||||||||||||||||||| Sbjct: 18379604 cctgtaagccatactgctctgcatgatatttgttatcaccctctaga 18379558
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 220 bits (111), Expect = 4e-54 Identities = 141/151 (93%) Strand = Plus / Minus Query: 26 caaatgctcagcaatgtccttctcatcaacattacacattattttctccttgtcgctctc 85 |||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 18309496 caaatgctcagcgatgtccttttcatcaacattacacattattttatccttgtcgctctc 18309437 Query: 86 acgaatatatacaagcatgtaggcatttgaatactttgtgaacttaaatggggtgttatt 145 ||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 18309436 acgaatatagacaagcatgtaggcattcgaatactttgtgaatttaaatggggtgttatt 18309377 Query: 146 gaaaccagggttaacttgaggtaactcttcc 176 |||||||||||| | |||||| |||| |||| Sbjct: 18309376 gaaaccagggtttatttgaggcaactgttcc 18309346 Score = 147 bits (74), Expect = 5e-32 Identities = 92/98 (93%) Strand = Plus / Minus Query: 438 accattgtatctcgcatgtaatcatattcgaaacgcttcagttgaagttgcaaaacaggg 497 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 18306255 accattgtatctcgcatgtaatcatattcaaaacgcttcagttgaagttgcaaaacagga 18306196 Query: 498 gggaaatcaagaaagagtacgccctttcttgcatcctg 535 ||||||||||| |||||||| ||||| |||||||||| Sbjct: 18306195 gggaaatcaaggaagagtactcccttctttgcatcctg 18306158 Score = 119 bits (60), Expect = 1e-23 Identities = 99/112 (88%) Strand = Plus / Minus Query: 324 ctgtggagagtgtaaaggttcctaatacttctatctgcatctggagtaagatattttcca 383 ||||| |||||||||||||| ||||| |||||||||||||| |||| ||||||||| ||| Sbjct: 18307782 ctgtgaagagtgtaaaggtttctaatgcttctatctgcatcaggagcaagatatttccca 18307723 Query: 384 tcatccttatcaagatcgagttgtagcgggaactcataacggtcattaatct 435 ||||| | |||||||| ||||| || ||||||||||| ||||||||||||| Sbjct: 18307722 tcatctctgtcaagatcaagttgaagtgggaactcataccggtcattaatct 18307671 Score = 111 bits (56), Expect = 3e-21 Identities = 74/80 (92%) Strand = Plus / Minus Query: 247 accactggtctgagagtgtaggtcgtatgaaagcgtagtagtgaccaccatgtactcctc 306 ||||||||||||| || ||||| ||||||||||| ||||||||||| ||||||||||||| Sbjct: 18308295 accactggtctgatagcgtaggccgtatgaaagcatagtagtgaccgccatgtactcctc 18308236 Query: 307 cactatgaacaagaacactg 326 | |||||||||||||||||| Sbjct: 18308235 cgctatgaacaagaacactg 18308216 Score = 95.6 bits (48), Expect = 2e-16 Identities = 72/80 (90%) Strand = Plus / Minus Query: 170 ctcttcctcgcccccgtactgctcttcaagcgcctttttagtatcttcttttgttactcg 229 |||||| || ||||| |||||||||||||| || ||||| |||||||||||||||||||| Sbjct: 18309232 ctcttcttcacccccatactgctcttcaagggcttttttggtatcttcttttgttactcg 18309173 Query: 230 ctcgtcatcaaatttatacc 249 || |||||||||||||||| Sbjct: 18309172 ttcatcatcaaatttatacc 18309153 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Minus Query: 532 cctgtaagccatgttgttcagcctggtatttgttatcaccctctaga 578 |||||||||||| || || || || ||||||||||||||||||||| Sbjct: 18305830 cctgtaagccatactgctctgcatgatatttgttatcaccctctaga 18305784
>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138585 Score = 220 bits (111), Expect = 4e-54 Identities = 141/151 (93%) Strand = Plus / Minus Query: 26 caaatgctcagcaatgtccttctcatcaacattacacattattttctccttgtcgctctc 85 |||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 35169 caaatgctcagcgatgtccttttcatcaacattacacattattttatccttgtcgctctc 35110 Query: 86 acgaatatatacaagcatgtaggcatttgaatactttgtgaacttaaatggggtgttatt 145 ||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 35109 acgaatatagacaagcatgtaggcattcgaatactttgtgaatttaaatggggtgttatt 35050 Query: 146 gaaaccagggttaacttgaggtaactcttcc 176 |||||||||||| | |||||| |||| |||| Sbjct: 35049 gaaaccagggtttatttgaggcaactgttcc 35019 Score = 147 bits (74), Expect = 5e-32 Identities = 92/98 (93%) Strand = Plus / Minus Query: 438 accattgtatctcgcatgtaatcatattcgaaacgcttcagttgaagttgcaaaacaggg 497 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 31928 accattgtatctcgcatgtaatcatattcaaaacgcttcagttgaagttgcaaaacagga 31869 Query: 498 gggaaatcaagaaagagtacgccctttcttgcatcctg 535 ||||||||||| |||||||| ||||| |||||||||| Sbjct: 31868 gggaaatcaaggaagagtactcccttctttgcatcctg 31831 Score = 119 bits (60), Expect = 1e-23 Identities = 99/112 (88%) Strand = Plus / Minus Query: 324 ctgtggagagtgtaaaggttcctaatacttctatctgcatctggagtaagatattttcca 383 ||||| |||||||||||||| ||||| |||||||||||||| |||| ||||||||| ||| Sbjct: 33455 ctgtgaagagtgtaaaggtttctaatgcttctatctgcatcaggagcaagatatttccca 33396 Query: 384 tcatccttatcaagatcgagttgtagcgggaactcataacggtcattaatct 435 ||||| | |||||||| ||||| || ||||||||||| ||||||||||||| Sbjct: 33395 tcatctctgtcaagatcaagttgaagtgggaactcataccggtcattaatct 33344 Score = 111 bits (56), Expect = 3e-21 Identities = 74/80 (92%) Strand = Plus / Minus Query: 247 accactggtctgagagtgtaggtcgtatgaaagcgtagtagtgaccaccatgtactcctc 306 ||||||||||||| || ||||| ||||||||||| ||||||||||| ||||||||||||| Sbjct: 33968 accactggtctgatagcgtaggccgtatgaaagcatagtagtgaccgccatgtactcctc 33909 Query: 307 cactatgaacaagaacactg 326 | |||||||||||||||||| Sbjct: 33908 cgctatgaacaagaacactg 33889 Score = 95.6 bits (48), Expect = 2e-16 Identities = 72/80 (90%) Strand = Plus / Minus Query: 170 ctcttcctcgcccccgtactgctcttcaagcgcctttttagtatcttcttttgttactcg 229 |||||| || ||||| |||||||||||||| || ||||| |||||||||||||||||||| Sbjct: 34905 ctcttcttcacccccatactgctcttcaagggcttttttggtatcttcttttgttactcg 34846 Query: 230 ctcgtcatcaaatttatacc 249 || |||||||||||||||| Sbjct: 34845 ttcatcatcaaatttatacc 34826 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Minus Query: 532 cctgtaagccatgttgttcagcctggtatttgttatcaccctctaga 578 |||||||||||| || || || || ||||||||||||||||||||| Sbjct: 31503 cctgtaagccatactgctctgcatgatatttgttatcaccctctaga 31457
>ref|NM_120743.2| Arabidopsis thaliana UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); cysteine-type endopeptidase/ double-stranded DNA binding / ubiquitin thiolesterase/ ubi> AT5G06600 (UBP12) transcript variant AT5G06600.1 mRNA, complete cds Length = 3898 Score = 176 bits (89), Expect = 5e-41 Identities = 328/407 (80%), Gaps = 3/407 (0%) Strand = Plus / Minus Query: 39 atgtccttctcatcaacattacacattattttctccttgtcgctctcacgaatatataca 98 ||||| ||||||||||| || || |||||||| || ||||| || || || ||||||||| Sbjct: 1725 atgtctttctcatcaacgttgcagattattttatctttgtcactttctcggatatataca 1666 Query: 99 agcatgtaggcatttgaatactttgtgaacttaaatggggtgttatt---gaaaccaggg 155 |||||||| ||||| || ||||||||||| || || || | |||||| ||||||||| Sbjct: 1665 agcatgtaagcattcgagtactttgtgaatttgaaaggagggttattattgaaaccagga 1606 Query: 156 ttaacttgaggtaactcttcctcgcccccgtactgctcttcaagcgcctttttagtatct 215 ||| || |||| |||||| || || || || ||||| || | ||| |||| |||| Sbjct: 1605 ttagtctgtggtagctcttcttcaccaccatattgctcctccaaagcccttttcaaatct 1546 Query: 216 tcttttgttactcgctcgtcatcaaatttataccactggtctgagagtgtaggtcgtatg 275 || || |||||||| || |||||||||||||||||||| |||||||| ||||| | ||| Sbjct: 1545 tccttggttactcgttcatcatcaaatttataccactgatctgagagcgtaggccttata 1486 Query: 276 aaagcgtagtagtgaccaccatgtactcctccactatgaacaagaacactgtggagagtg 335 ||||| || ||||| |||||||||||||||||||||||||| | ||||||||| ||||| Sbjct: 1485 aaagcataatagtgcccaccatgtactcctccactatgaactaaaacactgtgaagagta 1426 Query: 336 taaaggttcctaatacttctatctgcatctggagtaagatattttccatcatccttatca 395 |||||||| | | ||| || || ||||| || | ||||| |||||||| || ||||| Sbjct: 1425 taaaggttgcggacactcctgtcagcatcaggcgacagatactttccatcttctctatca 1366 Query: 396 agatcgagttgtagcgggaactcataacggtcattaatcttaaccat 442 ||||| |||| ||||| |||||||| || ||||| ||||| ||||| Sbjct: 1365 agatccagttcaagcggaaactcataccgatcatttatcttcaccat 1319
>ref|NM_180452.1| Arabidopsis thaliana UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); cysteine-type endopeptidase/ double-stranded DNA binding / ubiquitin thiolesterase/ ubi> AT5G06600 (UBP12) transcript variant AT5G06600.2 mRNA, complete cds Length = 3897 Score = 176 bits (89), Expect = 5e-41 Identities = 328/407 (80%), Gaps = 3/407 (0%) Strand = Plus / Minus Query: 39 atgtccttctcatcaacattacacattattttctccttgtcgctctcacgaatatataca 98 ||||| ||||||||||| || || |||||||| || ||||| || || || ||||||||| Sbjct: 1724 atgtctttctcatcaacgttgcagattattttatctttgtcactttctcggatatataca 1665 Query: 99 agcatgtaggcatttgaatactttgtgaacttaaatggggtgttatt---gaaaccaggg 155 |||||||| ||||| || ||||||||||| || || || | |||||| ||||||||| Sbjct: 1664 agcatgtaagcattcgagtactttgtgaatttgaaaggagggttattattgaaaccagga 1605 Query: 156 ttaacttgaggtaactcttcctcgcccccgtactgctcttcaagcgcctttttagtatct 215 ||| || |||| |||||| || || || || ||||| || | ||| |||| |||| Sbjct: 1604 ttagtctgtggtagctcttcttcaccaccatattgctcctccaaagcccttttcaaatct 1545 Query: 216 tcttttgttactcgctcgtcatcaaatttataccactggtctgagagtgtaggtcgtatg 275 || || |||||||| || |||||||||||||||||||| |||||||| ||||| | ||| Sbjct: 1544 tccttggttactcgttcatcatcaaatttataccactgatctgagagcgtaggccttata 1485 Query: 276 aaagcgtagtagtgaccaccatgtactcctccactatgaacaagaacactgtggagagtg 335 ||||| || ||||| |||||||||||||||||||||||||| | ||||||||| ||||| Sbjct: 1484 aaagcataatagtgcccaccatgtactcctccactatgaactaaaacactgtgaagagta 1425 Query: 336 taaaggttcctaatacttctatctgcatctggagtaagatattttccatcatccttatca 395 |||||||| | | ||| || || ||||| || | ||||| |||||||| || ||||| Sbjct: 1424 taaaggttgcggacactcctgtcagcatcaggcgacagatactttccatcttctctatca 1365 Query: 396 agatcgagttgtagcgggaactcataacggtcattaatcttaaccat 442 ||||| |||| ||||| |||||||| || ||||| ||||| ||||| Sbjct: 1364 agatccagttcaagcggaaactcataccgatcatttatcttcaccat 1318
>gb|AY142616.1| Arabidopsis thaliana putative ubiquitin-specific protease UBP12 (At5g06600) mRNA, complete cds Length = 3379 Score = 176 bits (89), Expect = 5e-41 Identities = 328/407 (80%), Gaps = 3/407 (0%) Strand = Plus / Minus Query: 39 atgtccttctcatcaacattacacattattttctccttgtcgctctcacgaatatataca 98 ||||| ||||||||||| || || |||||||| || ||||| || || || ||||||||| Sbjct: 1613 atgtctttctcatcaacgttgcagattattttatctttgtcactttctcggatatataca 1554 Query: 99 agcatgtaggcatttgaatactttgtgaacttaaatggggtgttatt---gaaaccaggg 155 |||||||| ||||| || ||||||||||| || || || | |||||| ||||||||| Sbjct: 1553 agcatgtaagcattcgagtactttgtgaatttgaaaggagggttattattgaaaccagga 1494 Query: 156 ttaacttgaggtaactcttcctcgcccccgtactgctcttcaagcgcctttttagtatct 215 ||| || |||| |||||| || || || || ||||| || | ||| |||| |||| Sbjct: 1493 ttagtctgtggtagctcttcttcaccaccatattgctcctccaaagcccttttcaaatct 1434 Query: 216 tcttttgttactcgctcgtcatcaaatttataccactggtctgagagtgtaggtcgtatg 275 || || |||||||| || |||||||||||||||||||| |||||||| ||||| | ||| Sbjct: 1433 tccttggttactcgttcatcatcaaatttataccactgatctgagagcgtaggccttata 1374 Query: 276 aaagcgtagtagtgaccaccatgtactcctccactatgaacaagaacactgtggagagtg 335 ||||| || ||||| |||||||||||||||||||||||||| | ||||||||| ||||| Sbjct: 1373 aaagcataatagtgcccaccatgtactcctccactatgaactaaaacactgtgaagagta 1314 Query: 336 taaaggttcctaatacttctatctgcatctggagtaagatattttccatcatccttatca 395 |||||||| | | ||| || || ||||| || | ||||| |||||||| || ||||| Sbjct: 1313 taaaggttgcggacactcctgtcagcatcaggcgacagatactttccatcttctctatca 1254 Query: 396 agatcgagttgtagcgggaactcataacggtcattaatcttaaccat 442 ||||| |||| ||||| |||||||| || ||||| ||||| ||||| Sbjct: 1253 agatccagttcaagcggaaactcataccgatcatttatcttcaccat 1207
>gb|AF360198.1| Arabidopsis thaliana putative ubiquitin-specific protease UBP12 (At5g06600) mRNA, complete cds Length = 3890 Score = 176 bits (89), Expect = 5e-41 Identities = 328/407 (80%), Gaps = 3/407 (0%) Strand = Plus / Minus Query: 39 atgtccttctcatcaacattacacattattttctccttgtcgctctcacgaatatataca 98 ||||| ||||||||||| || || |||||||| || ||||| || || || ||||||||| Sbjct: 1724 atgtctttctcatcaacgttgcagattattttatctttgtcactttctcggatatataca 1665 Query: 99 agcatgtaggcatttgaatactttgtgaacttaaatggggtgttatt---gaaaccaggg 155 |||||||| ||||| || ||||||||||| || || || | |||||| ||||||||| Sbjct: 1664 agcatgtaagcattcgagtactttgtgaatttgaaaggagggttattattgaaaccagga 1605 Query: 156 ttaacttgaggtaactcttcctcgcccccgtactgctcttcaagcgcctttttagtatct 215 ||| || |||| |||||| || || || || ||||| || | ||| |||| |||| Sbjct: 1604 ttagtctgtggtagctcttcttcaccaccatattgctcctccaaagcccttttcaaatct 1545 Query: 216 tcttttgttactcgctcgtcatcaaatttataccactggtctgagagtgtaggtcgtatg 275 || || |||||||| || |||||||||||||||||||| |||||||| ||||| | ||| Sbjct: 1544 tccttggttactcgttcatcatcaaatttataccactgatctgagagcgtaggccttata 1485 Query: 276 aaagcgtagtagtgaccaccatgtactcctccactatgaacaagaacactgtggagagtg 335 ||||| || ||||| |||||||||||||||||||||||||| | ||||||||| ||||| Sbjct: 1484 aaagcataatagtgcccaccatgtactcctccactatgaactaaaacactgtgaagagta 1425 Query: 336 taaaggttcctaatacttctatctgcatctggagtaagatattttccatcatccttatca 395 |||||||| | | ||| || || ||||| || | ||||| |||||||| || ||||| Sbjct: 1424 taaaggttgcggacactcctgtcagcatcaggcgacagatactttccatcttctctatca 1365 Query: 396 agatcgagttgtagcgggaactcataacggtcattaatcttaaccat 442 ||||| |||| ||||| |||||||| || ||||| ||||| ||||| Sbjct: 1364 agatccagttcaagcggaaactcataccgatcatttatcttcaccat 1318
>gb|AC108871.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0077M24, complete sequence Length = 128920 Score = 176 bits (89), Expect = 5e-41 Identities = 131/145 (90%) Strand = Plus / Plus Query: 27 aaatgctcagcaatgtccttctcatcaacattacacattattttctccttgtcgctctca 86 |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| Sbjct: 90297 aaatgctcagcaatgtccttctcatcaacattacacattattttgtccttatcactctca 90356 Query: 87 cgaatatatacaagcatgtaggcatttgaatactttgtgaacttaaatggggtgttattg 146 || || || |||||||||||||||||||||||||||||||| |||||||| | ||| ||| Sbjct: 90357 cggatgtagacaagcatgtaggcatttgaatactttgtgaatttaaatggagcgttgttg 90416 Query: 147 aaaccagggttaacttgaggtaact 171 |||||||| || | |||||| |||| Sbjct: 90417 aaaccaggatttatttgaggcaact 90441 Score = 103 bits (52), Expect = 6e-19 Identities = 73/80 (91%) Strand = Plus / Plus Query: 170 ctcttcctcgcccccgtactgctcttcaagcgcctttttagtatcttcttttgttactcg 229 ||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||| || Sbjct: 90541 ctcttcctcacccccgtattgctcttcaagggccttcttagtatcttctttagttacacg 90600 Query: 230 ctcgtcatcaaatttatacc 249 ||| |||||||||||||||| Sbjct: 90601 ctcatcatcaaatttatacc 90620 Score = 95.6 bits (48), Expect = 2e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 336 taaaggttcctaatacttctatctgcatctggagtaagatattttccatcatccttatca 395 |||||||| || |||||||||||||||||||||| |||||||||||||||||| |||| Sbjct: 92134 taaaggtttcttatacttctatctgcatctggagcaagatattttccatcatctctatcc 92193 Query: 396 agatcgagttgtagcgggaactcataacggtcattaatct 435 | ||| ||||| | ||||| ||||| ||||||||||||| Sbjct: 92194 aaatcaagttgcaaagggaattcatagcggtcattaatct 92233 Score = 91.7 bits (46), Expect = 2e-15 Identities = 88/102 (86%) Strand = Plus / Plus Query: 434 cttaaccattgtatctcgcatgtaatcatattcgaaacgcttcagttgaagttgcaaaac 493 ||||||||| ||||||| ||| || || || || |||||||||||||||||||||||||| Sbjct: 94146 cttaaccatggtatctctcatatagtcgtactcaaaacgcttcagttgaagttgcaaaac 94205 Query: 494 aggggggaaatcaagaaagagtacgccctttcttgcatcctg 535 |||||||||||||| || || || |||||| | |||||||| Sbjct: 94206 tggggggaaatcaaggaacagaacaccctttttcgcatcctg 94247 Score = 87.7 bits (44), Expect = 4e-14 Identities = 56/60 (93%) Strand = Plus / Plus Query: 267 ggtcgtatgaaagcgtagtagtgaccaccatgtactcctccactatgaacaagaacactg 326 ||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 91489 ggtcgaatgaaggcatagtagtgaccgccatgtactcctccactatgaacaagaacactg 91548
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 176 bits (89), Expect = 5e-41 Identities = 131/145 (90%) Strand = Plus / Plus Query: 27 aaatgctcagcaatgtccttctcatcaacattacacattattttctccttgtcgctctca 86 |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| Sbjct: 20655289 aaatgctcagcaatgtccttctcatcaacattacacattattttgtccttatcactctca 20655348 Query: 87 cgaatatatacaagcatgtaggcatttgaatactttgtgaacttaaatggggtgttattg 146 || || || |||||||||||||||||||||||||||||||| |||||||| | ||| ||| Sbjct: 20655349 cggatgtagacaagcatgtaggcatttgaatactttgtgaatttaaatggagcgttgttg 20655408 Query: 147 aaaccagggttaacttgaggtaact 171 |||||||| || | |||||| |||| Sbjct: 20655409 aaaccaggatttatttgaggcaact 20655433 Score = 103 bits (52), Expect = 6e-19 Identities = 73/80 (91%) Strand = Plus / Plus Query: 170 ctcttcctcgcccccgtactgctcttcaagcgcctttttagtatcttcttttgttactcg 229 ||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||| || Sbjct: 20655533 ctcttcctcacccccgtattgctcttcaagggccttcttagtatcttctttagttacacg 20655592 Query: 230 ctcgtcatcaaatttatacc 249 ||| |||||||||||||||| Sbjct: 20655593 ctcatcatcaaatttatacc 20655612 Score = 95.6 bits (48), Expect = 2e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 336 taaaggttcctaatacttctatctgcatctggagtaagatattttccatcatccttatca 395 |||||||| || |||||||||||||||||||||| |||||||||||||||||| |||| Sbjct: 20657126 taaaggtttcttatacttctatctgcatctggagcaagatattttccatcatctctatcc 20657185 Query: 396 agatcgagttgtagcgggaactcataacggtcattaatct 435 | ||| ||||| | ||||| ||||| ||||||||||||| Sbjct: 20657186 aaatcaagttgcaaagggaattcatagcggtcattaatct 20657225 Score = 91.7 bits (46), Expect = 2e-15 Identities = 88/102 (86%) Strand = Plus / Plus Query: 434 cttaaccattgtatctcgcatgtaatcatattcgaaacgcttcagttgaagttgcaaaac 493 ||||||||| ||||||| ||| || || || || |||||||||||||||||||||||||| Sbjct: 20659138 cttaaccatggtatctctcatatagtcgtactcaaaacgcttcagttgaagttgcaaaac 20659197 Query: 494 aggggggaaatcaagaaagagtacgccctttcttgcatcctg 535 |||||||||||||| || || || |||||| | |||||||| Sbjct: 20659198 tggggggaaatcaaggaacagaacaccctttttcgcatcctg 20659239 Score = 87.7 bits (44), Expect = 4e-14 Identities = 56/60 (93%) Strand = Plus / Plus Query: 267 ggtcgtatgaaagcgtagtagtgaccaccatgtactcctccactatgaacaagaacactg 326 ||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 20656481 ggtcgaatgaaggcatagtagtgaccgccatgtactcctccactatgaacaagaacactg 20656540
>gb|AF302663.1|AF302663 Arabidopsis thaliana ubiquitin-specific protease 12 (UBP12) mRNA, complete cds Length = 3427 Score = 176 bits (89), Expect = 5e-41 Identities = 328/407 (80%), Gaps = 3/407 (0%) Strand = Plus / Minus Query: 39 atgtccttctcatcaacattacacattattttctccttgtcgctctcacgaatatataca 98 ||||| ||||||||||| || || |||||||| || ||||| || || || ||||||||| Sbjct: 1652 atgtctttctcatcaacgttgcagattattttatctttgtcactttctcggatatataca 1593 Query: 99 agcatgtaggcatttgaatactttgtgaacttaaatggggtgttatt---gaaaccaggg 155 |||||||| ||||| || ||||||||||| || || || | |||||| ||||||||| Sbjct: 1592 agcatgtaagcattcgagtactttgtgaatttgaaaggagggttattattgaaaccagga 1533 Query: 156 ttaacttgaggtaactcttcctcgcccccgtactgctcttcaagcgcctttttagtatct 215 ||| || |||| |||||| || || || || ||||| || | ||| |||| |||| Sbjct: 1532 ttagtctgtggtagctcttcttcaccaccatattgctcctccaaagcccttttcaaatct 1473 Query: 216 tcttttgttactcgctcgtcatcaaatttataccactggtctgagagtgtaggtcgtatg 275 || || |||||||| || |||||||||||||||||||| |||||||| ||||| | ||| Sbjct: 1472 tccttggttactcgttcatcatcaaatttataccactgatctgagagcgtaggccttata 1413 Query: 276 aaagcgtagtagtgaccaccatgtactcctccactatgaacaagaacactgtggagagtg 335 ||||| || ||||| |||||||||||||||||||||||||| | ||||||||| ||||| Sbjct: 1412 aaagcataatagtgcccaccatgtactcctccactatgaactaaaacactgtgaagagta 1353 Query: 336 taaaggttcctaatacttctatctgcatctggagtaagatattttccatcatccttatca 395 |||||||| | | ||| || || ||||| || | ||||| |||||||| || ||||| Sbjct: 1352 taaaggttgcggacactcctgtcagcatcaggcgacagatactttccatcttctctatca 1293 Query: 396 agatcgagttgtagcgggaactcataacggtcattaatcttaaccat 442 ||||| |||| ||||| |||||||| || ||||| ||||| ||||| Sbjct: 1292 agatccagttcaagcggaaactcataccgatcatttatcttcaccat 1246
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 176 bits (89), Expect = 5e-41 Identities = 131/145 (90%) Strand = Plus / Plus Query: 27 aaatgctcagcaatgtccttctcatcaacattacacattattttctccttgtcgctctca 86 |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| Sbjct: 20965524 aaatgctcagcaatgtccttctcatcaacattacacattattttgtccttatcactctca 20965583 Query: 87 cgaatatatacaagcatgtaggcatttgaatactttgtgaacttaaatggggtgttattg 146 || || || |||||||||||||||||||||||||||||||| |||||||| | ||| ||| Sbjct: 20965584 cggatgtagacaagcatgtaggcatttgaatactttgtgaatttaaatggagcgttgttg 20965643 Query: 147 aaaccagggttaacttgaggtaact 171 |||||||| || | |||||| |||| Sbjct: 20965644 aaaccaggatttatttgaggcaact 20965668 Score = 103 bits (52), Expect = 6e-19 Identities = 73/80 (91%) Strand = Plus / Plus Query: 170 ctcttcctcgcccccgtactgctcttcaagcgcctttttagtatcttcttttgttactcg 229 ||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||| || Sbjct: 20965768 ctcttcctcacccccgtattgctcttcaagggccttcttagtatcttctttagttacacg 20965827 Query: 230 ctcgtcatcaaatttatacc 249 ||| |||||||||||||||| Sbjct: 20965828 ctcatcatcaaatttatacc 20965847 Score = 95.6 bits (48), Expect = 2e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 336 taaaggttcctaatacttctatctgcatctggagtaagatattttccatcatccttatca 395 |||||||| || |||||||||||||||||||||| |||||||||||||||||| |||| Sbjct: 20967361 taaaggtttcttatacttctatctgcatctggagcaagatattttccatcatctctatcc 20967420 Query: 396 agatcgagttgtagcgggaactcataacggtcattaatct 435 | ||| ||||| | ||||| ||||| ||||||||||||| Sbjct: 20967421 aaatcaagttgcaaagggaattcatagcggtcattaatct 20967460 Score = 91.7 bits (46), Expect = 2e-15 Identities = 88/102 (86%) Strand = Plus / Plus Query: 434 cttaaccattgtatctcgcatgtaatcatattcgaaacgcttcagttgaagttgcaaaac 493 ||||||||| ||||||| ||| || || || || |||||||||||||||||||||||||| Sbjct: 20969373 cttaaccatggtatctctcatatagtcgtactcaaaacgcttcagttgaagttgcaaaac 20969432 Query: 494 aggggggaaatcaagaaagagtacgccctttcttgcatcctg 535 |||||||||||||| || || || |||||| | |||||||| Sbjct: 20969433 tggggggaaatcaaggaacagaacaccctttttcgcatcctg 20969474 Score = 87.7 bits (44), Expect = 4e-14 Identities = 56/60 (93%) Strand = Plus / Plus Query: 267 ggtcgtatgaaagcgtagtagtgaccaccatgtactcctccactatgaacaagaacactg 326 ||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 20966716 ggtcgaatgaaggcatagtagtgaccgccatgtactcctccactatgaacaagaacactg 20966775
>ref|NM_191424.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3327 Score = 137 bits (69), Expect = 5e-29 Identities = 386/489 (78%), Gaps = 2/489 (0%) Strand = Plus / Minus Query: 84 tcacgaatatatacaagcatgtaggcatttgaatactttgtgaacttaaatggggtgtta 143 |||||||| || ||||||||||| |||||||||| ||| || ||| ||| |||||| || Sbjct: 1550 tcacgaatgtacacaagcatgtaagcatttgaatgcttagtaaacctaagcggggtggta 1491 Query: 144 ttgaaaccagggttaacttgaggtaactcttcctcgcccccgtactgctcttcaagcgcc 203 || || ||||| || || || | |||||||||||| ||||| ||||| || | ||| Sbjct: 1490 ttcaatccaggattggtatgtgggagctcttcctcgccaccgtattgctcctctaatgcc 1431 Query: 204 tttttagtatcttcttttgttactcgctcgtcatcaaatttataccactggtctgagagt 263 || | ||||||||||| ||||| || |||||||| || ||||| ||||| ||| Sbjct: 1430 cgcttcatgtcttcttttgtcactcgttcatcatcaaacttgtaccatatatctgaaagt 1371 Query: 264 gtaggtcgtatgaaagcgtagtagtgaccaccatgtactcctccactatgaacaagaaca 323 | || ||||| || ||||||||||| |||||||| | || |||||||||||||| || Sbjct: 1370 gccgggcgtataaaggcgtagtagtgtccaccatgaccaccaccactatgaacaagtacg 1311 Query: 324 ctgtggagagtgtaaaggttcctaatacttctatctgcatctggagtaagatattttcca 383 ||||| ||||| || ||||| | | || || || || ||||||| || ||||||||| Sbjct: 1310 ctgtgtagagtatagaggttacgcaccctcctgtcagcttctggagagaggtattttcca 1251 Query: 384 tcatccttatcaagatcgagttgtagcgggaactcataacggtcattaatcttaaccatt 443 |||||||| |||||||| | ||||| ||||||||||| |||||||| ||||||||||| Sbjct: 1250 tcatccttgtcaagatctaattgtaatgggaactcatagcggtcatttatcttaaccatg 1191 Query: 444 gtatctcgcatgtaatcatattcgaaacgcttcagttgaagttgcaaaacaggggggaaa 503 ||||| |||| |||||||||| || ||||| | ||||| ||||| || || ||||| Sbjct: 1190 gtatcccgcacaaaatcatattcaaaccgctttaattgaacttgcaggactggagggaag 1131 Query: 504 tcaagaaagagtacgccctttctt-gcatcctgtaagccatgttgttcagcctggtattt 562 |||| ||| || | ||||||||| |||||||| || ||||||| |||| ||||||||| Sbjct: 1130 tcaataaaaagca-tccctttcttggcatcctgcaaaccatgtttctcagactggtattt 1072 Query: 563 gttatcacc 571 |||||||| Sbjct: 1071 attatcacc 1063
>ref|NM_112024.3| Arabidopsis thaliana cysteine-type endopeptidase/ double-stranded DNA binding / ubiquitin thiolesterase/ ubiquitin-specific protease AT3G11910 mRNA, complete cds Length = 3813 Score = 119 bits (60), Expect = 1e-23 Identities = 330/420 (78%) Strand = Plus / Minus Query: 26 caaatgctcagcaatgtccttctcatcaacattacacattattttctccttgtcgctctc 85 |||||| || |||||||| ||||||||||| || || ||||| || |||||||| || || Sbjct: 1718 caaatgttccgcaatgtctttctcatcaacgttgcagattatcttatccttgtcactttc 1659 Query: 86 acgaatatatacaagcatgtaggcatttgaatactttgtgaacttaaatggggtgttatt 145 |||||||| ||||||||||| ||||| || || |||||||| || || || | ||||| Sbjct: 1658 ccgaatataaacaagcatgtatgcattcgagtattttgtgaatttgaaaggtggattatt 1599 Query: 146 gaaaccagggttaacttgaggtaactcttcctcgcccccgtactgctcttcaagcgcctt 205 ||||||||| ||| || ||||||||||| || || || || |||||||| || || | Sbjct: 1598 gaaaccaggattattctgcggtaactcttcttcaccaccatattgctcttccagtgctct 1539 Query: 206 tttagtatcttcttttgttactcgctcgtcatcaaatttataccactggtctgagagtgt 265 ||| ||||||||| || || || || || ||||||||||||||||| ||||| ||||| Sbjct: 1538 tttgacatcttctttcgtgacccgttcatcgtcaaatttataccactgatctgaaagtgt 1479 Query: 266 aggtcgtatgaaagcgtagtagtgaccaccatgtactcctccactatgaacaagaacact 325 || | || ||||| || || || || ||||| ||||||||||| ||||| | ||||| Sbjct: 1478 tggcctaataaaagcataataatgccctccatgcactcctccactgtgaaccaagacact 1419 Query: 326 gtggagagtgtaaaggttcctaatacttctatctgcatctggagtaagatattttccatc 385 |||||| ||||| || || | | ||| | |||||||| || | | |||| ||||||| Sbjct: 1418 gtggagggtgtagagattgcggacactcttgtctgcatcaggggataaatatcttccatc 1359 Query: 386 atccttatcaagatcgagttgtagcgggaactcataacggtcattaatcttaaccattgt 445 || | || ||||| ||||| || || |||||||| || ||||||||||| |||||||| Sbjct: 1358 ttctctgtcgagatccagttggagaggaaactcataccgatcattaatcttcaccattgt 1299
>gb|AY064010.1| Arabidopsis thaliana At3g11910 mRNA sequence Length = 4231 Score = 119 bits (60), Expect = 1e-23 Identities = 249/312 (79%) Strand = Plus / Minus Query: 26 caaatgctcagcaatgtccttctcatcaacattacacattattttctccttgtcgctctc 85 |||||| || |||||||| ||||||||||| || || ||||| || |||||||| || || Sbjct: 1720 caaatgttccgcaatgtctttctcatcaacgttgcagattatcttatccttgtcactttc 1661 Query: 86 acgaatatatacaagcatgtaggcatttgaatactttgtgaacttaaatggggtgttatt 145 |||||||| ||||||||||| ||||| || || |||||||| || || || | ||||| Sbjct: 1660 ccgaatataaacaagcatgtatgcattcgagtattttgtgaatttgaaaggtggattatt 1601 Query: 146 gaaaccagggttaacttgaggtaactcttcctcgcccccgtactgctcttcaagcgcctt 205 ||||||||| ||| || ||||||||||| || || || || |||||||| || || | Sbjct: 1600 gaaaccaggattattctgcggtaactcttcttcaccaccatattgctcttccagtgctct 1541 Query: 206 tttagtatcttcttttgttactcgctcgtcatcaaatttataccactggtctgagagtgt 265 ||| ||||||||| || || || || || ||||||||||||||||| ||||| ||||| Sbjct: 1540 tttgacatcttctttcgtgacccgttcatcgtcaaatttataccactgatctgaaagtgt 1481 Query: 266 aggtcgtatgaaagcgtagtagtgaccaccatgtactcctccactatgaacaagaacact 325 || | || ||||| || || || || ||||| ||||||||||| ||||| | ||||| Sbjct: 1480 tggcctaataaaagcataataatgccctccatgcactcctccactgtgaaccaagacact 1421 Query: 326 gtggagagtgta 337 |||||| ||||| Sbjct: 1420 gtggagggtgta 1409 Score = 44.1 bits (22), Expect = 0.50 Identities = 43/50 (86%) Strand = Plus / Minus Query: 396 agatcgagttgtagcgggaactcataacggtcattaatcttaaccattgt 445 ||||| ||||| || || |||||||| || ||||||||||| |||||||| Sbjct: 1350 agatccagttggagaggaaactcataccgatcattaatcttcaccattgt 1301
>gb|BT002760.1| Arabidopsis thaliana clone C105177 putative ubiquitin carboxyl-terminal hydrolase (At3g11910) mRNA, complete cds Length = 3379 Score = 119 bits (60), Expect = 1e-23 Identities = 330/420 (78%) Strand = Plus / Minus Query: 26 caaatgctcagcaatgtccttctcatcaacattacacattattttctccttgtcgctctc 85 |||||| || |||||||| ||||||||||| || || ||||| || |||||||| || || Sbjct: 1623 caaatgttccgcaatgtctttctcatcaacgttgcagattatcttatccttgtcactttc 1564 Query: 86 acgaatatatacaagcatgtaggcatttgaatactttgtgaacttaaatggggtgttatt 145 |||||||| ||||||||||| ||||| || || |||||||| || || || | ||||| Sbjct: 1563 ccgaatataaacaagcatgtatgcattcgagtattttgtgaatttgaaaggtggattatt 1504 Query: 146 gaaaccagggttaacttgaggtaactcttcctcgcccccgtactgctcttcaagcgcctt 205 ||||||||| ||| || ||||||||||| || || || || |||||||| || || | Sbjct: 1503 gaaaccaggattattctgcggtaactcttcttcaccaccatattgctcttccagtgctct 1444 Query: 206 tttagtatcttcttttgttactcgctcgtcatcaaatttataccactggtctgagagtgt 265 ||| ||||||||| || || || || || ||||||||||||||||| ||||| ||||| Sbjct: 1443 tttgacatcttctttcgtgacccgttcatcgtcaaatttataccactgatctgaaagtgt 1384 Query: 266 aggtcgtatgaaagcgtagtagtgaccaccatgtactcctccactatgaacaagaacact 325 || | || ||||| || || || || ||||| ||||||||||| ||||| | ||||| Sbjct: 1383 tggcctaataaaagcataataatgccctccatgcactcctccactgtgaaccaagacact 1324 Query: 326 gtggagagtgtaaaggttcctaatacttctatctgcatctggagtaagatattttccatc 385 |||||| ||||| || || | | ||| | |||||||| || | | |||| ||||||| Sbjct: 1323 gtggagggtgtagagattgcggacactcttgtctgcatcaggggataaatatcttccatc 1264 Query: 386 atccttatcaagatcgagttgtagcgggaactcataacggtcattaatcttaaccattgt 445 || | || ||||| ||||| || || |||||||| || ||||||||||| |||||||| Sbjct: 1263 ttctctgtcgagatccagttggagaggaaactcataccgatcattaatcttcaccattgt 1204
>gb|AC171736.1| Lycopersicon esculentum chromosome 11 clone C11HBa0323E19, complete sequence Length = 141216 Score = 103 bits (52), Expect = 6e-19 Identities = 82/92 (89%) Strand = Plus / Minus Query: 30 tgctcagcaatgtccttctcatcaacattacacattattttctccttgtcgctctcacga 89 |||||||||||||||||||| ||||||||||||||||||||||| ||||| | || ||| Sbjct: 37523 tgctcagcaatgtccttctcgtcaacattacacattattttctctttgtcacattcccga 37464 Query: 90 atatatacaagcatgtaggcatttgaatactt 121 ||||| || |||||||| |||||||| ||||| Sbjct: 37463 atatagaccagcatgtaagcatttgagtactt 37432 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Minus Query: 391 tatcaagatcgagttgtagcgggaactcataacggtcattaatct 435 |||| ||||||||||| || ||||||||||| | |||||| |||| Sbjct: 33653 tatctagatcgagttgcagagggaactcatacctgtcatttatct 33609
>dbj|AP002543.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15M7 Length = 74350 Score = 83.8 bits (42), Expect = 6e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 245 ataccactggtctgagagtgtaggtcgtatgaaagcgtagtagtgaccaccatgtactcc 304 ||||||||| |||||||| ||||| | ||| ||||| || ||||| |||||||||||||| Sbjct: 49114 ataccactgatctgagagcgtaggccttataaaagcataatagtgcccaccatgtactcc 49173 Query: 305 tccactatgaacaagaacactg 326 |||||||||||| | ||||||| Sbjct: 49174 tccactatgaactaaaacactg 49195 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 39 atgtccttctcatcaacattacacattattttctccttgtcgctctcacgaatatataca 98 ||||| ||||||||||| || || |||||||| || ||||| || || || ||||||||| Sbjct: 48610 atgtctttctcatcaacgttgcagattattttatctttgtcactttctcggatatataca 48669 Query: 99 agcatgtaggcatttgaatactttgtgaa 127 |||||||| ||||| || ||||||||||| Sbjct: 48670 agcatgtaagcattcgagtactttgtgaa 48698 Score = 44.1 bits (22), Expect = 0.50 Identities = 34/38 (89%) Strand = Plus / Plus Query: 212 atcttcttttgttactcgctcgtcatcaaatttatacc 249 |||||| || |||||||| || |||||||||||||||| Sbjct: 48872 atcttccttggttactcgttcatcatcaaatttatacc 48909
>dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02D13, TM0546, complete sequence Length = 107979 Score = 83.8 bits (42), Expect = 6e-13 Identities = 116/138 (84%), Gaps = 2/138 (1%) Strand = Plus / Plus Query: 18 cttatcctcaaatgctcagcaatgtccttctcatcaacattacacattattttctccttg 77 |||| ||| ||||| |||||||| || |||||||| ||||| || |||| ||| |||||| Sbjct: 83746 cttacccttaaatgttcagcaatatctttctcatccacattgcatattactttgtccttg 83805 Query: 78 tc-gctctcacgaatatatacaagcatgtaggcatttgaatactttgtgaacttaaatgg 136 || ||| ||||| |||||||| ||||| || ||||||||||| || ||||| ||||| || Sbjct: 83806 tcagct-tcacgtatatataccagcatatatgcatttgaatatttggtgaatttaaaagg 83864 Query: 137 ggtgttattgaaaccagg 154 ||||||||||| ||||| Sbjct: 83865 tgtgttattgaatccagg 83882 Score = 48.1 bits (24), Expect = 0.032 Identities = 39/44 (88%) Strand = Plus / Plus Query: 206 tttagtatcttcttttgttactcgctcgtcatcaaatttatacc 249 |||||||||||||||||| || | ||| ||||||||||| |||| Sbjct: 84019 tttagtatcttcttttgtcaccctctcatcatcaaatttgtacc 84062
>gb|AC016795.6|ATAC016795 Arabidopsis thaliana chromosome III BAC F26K24 genomic sequence, complete sequence Length = 100835 Score = 81.8 bits (41), Expect = 2e-12 Identities = 107/129 (82%) Strand = Plus / Plus Query: 26 caaatgctcagcaatgtccttctcatcaacattacacattattttctccttgtcgctctc 85 |||||| || |||||||| ||||||||||| || || ||||| || |||||||| || || Sbjct: 66909 caaatgttccgcaatgtctttctcatcaacgttgcagattatcttatccttgtcactttc 66968 Query: 86 acgaatatatacaagcatgtaggcatttgaatactttgtgaacttaaatggggtgttatt 145 |||||||| ||||||||||| ||||| || || |||||||| || || || | ||||| Sbjct: 66969 ccgaatataaacaagcatgtatgcattcgagtattttgtgaatttgaaaggtggattatt 67028 Query: 146 gaaaccagg 154 ||||||||| Sbjct: 67029 gaaaccagg 67037
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 81.8 bits (41), Expect = 2e-12 Identities = 86/101 (85%) Strand = Plus / Minus Query: 30 tgctcagcaatgtccttctcatcaacattacacattattttctccttgtcgctctcacga 89 ||||| || |||||||||||||| || ||||| |||||||| |||||||| || || ||| Sbjct: 3449702 tgctctgctatgtccttctcatccacgttacaaattattttgtccttgtcactttcgcga 3449643 Query: 90 atatatacaagcatgtaggcatttgaatactttgtgaactt 130 || || ||||||||||| || |||||||| || |||||||| Sbjct: 3449642 atgtacacaagcatgtatgcgtttgaatatttagtgaactt 3449602 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 438 accattgtatctcgcatgtaatcatattcgaaacgcttcagttgaagttgcaaaacaggg 497 ||||||||||| |||||| |||||||||| || || || || ||||||||||||||||| Sbjct: 3448078 accattgtatcacgcatgaaatcatattcaaagcgttttagctgaagttgcaaaacagga 3448019 Query: 498 gggaa 502 ||||| Sbjct: 3448018 gggaa 3448014 Score = 63.9 bits (32), Expect = 5e-07 Identities = 92/112 (82%) Strand = Plus / Minus Query: 324 ctgtggagagtgtaaaggttcctaatacttctatctgcatctggagtaagatattttcca 383 ||||| ||||||||||| |||| | | | |||||||||||||||| || || |||||| Sbjct: 3448371 ctgtgaagagtgtaaagattccgcacattcctatctgcatctggagagaggtactttcca 3448312 Query: 384 tcatccttatcaagatcgagttgtagcgggaactcataacggtcattaatct 435 ||||| |||||||||| | || | |||||||||||| |||||||| |||| Sbjct: 3448311 tcatctctatcaagatccaactgaatcgggaactcatagcggtcatttatct 3448260 Score = 60.0 bits (30), Expect = 8e-06 Identities = 69/82 (84%) Strand = Plus / Minus Query: 245 ataccactggtctgagagtgtaggtcgtatgaaagcgtagtagtgaccaccatgtactcc 304 ||||||||| || || || ||||| ||||||||||| ||||| || |||||||| || || Sbjct: 3448659 ataccactgatcagaaagagtaggccgtatgaaagcatagtaatgcccaccatgaacacc 3448600 Query: 305 tccactatgaacaagaacactg 326 |||||||| || ||||||||| Sbjct: 3448599 cccactatggacgagaacactg 3448578
>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0428D12 Length = 141678 Score = 81.8 bits (41), Expect = 2e-12 Identities = 86/101 (85%) Strand = Plus / Minus Query: 30 tgctcagcaatgtccttctcatcaacattacacattattttctccttgtcgctctcacga 89 ||||| || |||||||||||||| || ||||| |||||||| |||||||| || || ||| Sbjct: 89522 tgctctgctatgtccttctcatccacgttacaaattattttgtccttgtcactttcgcga 89463 Query: 90 atatatacaagcatgtaggcatttgaatactttgtgaactt 130 || || ||||||||||| || |||||||| || |||||||| Sbjct: 89462 atgtacacaagcatgtatgcgtttgaatatttagtgaactt 89422 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 438 accattgtatctcgcatgtaatcatattcgaaacgcttcagttgaagttgcaaaacaggg 497 ||||||||||| |||||| |||||||||| || || || || ||||||||||||||||| Sbjct: 87898 accattgtatcacgcatgaaatcatattcaaagcgttttagctgaagttgcaaaacagga 87839 Query: 498 gggaa 502 ||||| Sbjct: 87838 gggaa 87834 Score = 63.9 bits (32), Expect = 5e-07 Identities = 92/112 (82%) Strand = Plus / Minus Query: 324 ctgtggagagtgtaaaggttcctaatacttctatctgcatctggagtaagatattttcca 383 ||||| ||||||||||| |||| | | | |||||||||||||||| || || |||||| Sbjct: 88191 ctgtgaagagtgtaaagattccgcacattcctatctgcatctggagagaggtactttcca 88132 Query: 384 tcatccttatcaagatcgagttgtagcgggaactcataacggtcattaatct 435 ||||| |||||||||| | || | |||||||||||| |||||||| |||| Sbjct: 88131 tcatctctatcaagatccaactgaatcgggaactcatagcggtcatttatct 88080 Score = 60.0 bits (30), Expect = 8e-06 Identities = 69/82 (84%) Strand = Plus / Minus Query: 245 ataccactggtctgagagtgtaggtcgtatgaaagcgtagtagtgaccaccatgtactcc 304 ||||||||| || || || ||||| ||||||||||| ||||| || |||||||| || || Sbjct: 88479 ataccactgatcagaaagagtaggccgtatgaaagcatagtaatgcccaccatgaacacc 88420 Query: 305 tccactatgaacaagaacactg 326 |||||||| || ||||||||| Sbjct: 88419 cccactatggacgagaacactg 88398
>dbj|AP002040.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MEC18 Length = 80099 Score = 81.8 bits (41), Expect = 2e-12 Identities = 107/129 (82%) Strand = Plus / Plus Query: 26 caaatgctcagcaatgtccttctcatcaacattacacattattttctccttgtcgctctc 85 |||||| || |||||||| ||||||||||| || || ||||| || |||||||| || || Sbjct: 316 caaatgttccgcaatgtctttctcatcaacgttgcagattatcttatccttgtcactttc 375 Query: 86 acgaatatatacaagcatgtaggcatttgaatactttgtgaacttaaatggggtgttatt 145 |||||||| ||||||||||| ||||| || || |||||||| || || || | ||||| Sbjct: 376 ccgaatataaacaagcatgtatgcattcgagtattttgtgaatttgaaaggtggattatt 435 Query: 146 gaaaccagg 154 ||||||||| Sbjct: 436 gaaaccagg 444
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 375 tattttccatcatccttatcaagatcgagttgtagcgggaactcataacggtcattaatc 434 ||||||||||||||||| |||||||| | ||||| ||||||||||| |||||||| ||| Sbjct: 32558055 tattttccatcatccttgtcaagatctaattgtaatgggaactcatagcggtcatttatc 32558114 Query: 435 t 435 | Sbjct: 32558115 t 32558115 Score = 46.1 bits (23), Expect = 0.13 Identities = 59/71 (83%) Strand = Plus / Plus Query: 84 tcacgaatatatacaagcatgtaggcatttgaatactttgtgaacttaaatggggtgtta 143 |||||||| || ||||||||||| |||||||||| ||| || ||| ||| |||||| || Sbjct: 32555942 tcacgaatgtacacaagcatgtaagcatttgaatgcttagtaaacctaagcggggtggta 32556001 Query: 144 ttgaaaccagg 154 || || ||||| Sbjct: 32556002 ttcaatccagg 32556012 Score = 44.1 bits (22), Expect = 0.50 Identities = 43/50 (86%) Strand = Plus / Plus Query: 270 cgtatgaaagcgtagtagtgaccaccatgtactcctccactatgaacaag 319 ||||| || ||||||||||| |||||||| | || |||||||||||||| Sbjct: 32557244 cgtataaaggcgtagtagtgtccaccatgaccaccaccactatgaacaag 32557293
>dbj|AP003295.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0695H10 Length = 136883 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 375 tattttccatcatccttatcaagatcgagttgtagcgggaactcataacggtcattaatc 434 ||||||||||||||||| |||||||| | ||||| ||||||||||| |||||||| ||| Sbjct: 20850 tattttccatcatccttgtcaagatctaattgtaatgggaactcatagcggtcatttatc 20909 Query: 435 t 435 | Sbjct: 20910 t 20910 Score = 46.1 bits (23), Expect = 0.13 Identities = 59/71 (83%) Strand = Plus / Plus Query: 84 tcacgaatatatacaagcatgtaggcatttgaatactttgtgaacttaaatggggtgtta 143 |||||||| || ||||||||||| |||||||||| ||| || ||| ||| |||||| || Sbjct: 18737 tcacgaatgtacacaagcatgtaagcatttgaatgcttagtaaacctaagcggggtggta 18796 Query: 144 ttgaaaccagg 154 || || ||||| Sbjct: 18797 ttcaatccagg 18807 Score = 44.1 bits (22), Expect = 0.50 Identities = 43/50 (86%) Strand = Plus / Plus Query: 270 cgtatgaaagcgtagtagtgaccaccatgtactcctccactatgaacaag 319 ||||| || ||||||||||| |||||||| | || |||||||||||||| Sbjct: 20039 cgtataaaggcgtagtagtgtccaccatgaccaccaccactatgaacaag 20088
>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665A11 Length = 166421 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 375 tattttccatcatccttatcaagatcgagttgtagcgggaactcataacggtcattaatc 434 ||||||||||||||||| |||||||| | ||||| ||||||||||| |||||||| ||| Sbjct: 145576 tattttccatcatccttgtcaagatctaattgtaatgggaactcatagcggtcatttatc 145635 Query: 435 t 435 | Sbjct: 145636 t 145636 Score = 46.1 bits (23), Expect = 0.13 Identities = 59/71 (83%) Strand = Plus / Plus Query: 84 tcacgaatatatacaagcatgtaggcatttgaatactttgtgaacttaaatggggtgtta 143 |||||||| || ||||||||||| |||||||||| ||| || ||| ||| |||||| || Sbjct: 143463 tcacgaatgtacacaagcatgtaagcatttgaatgcttagtaaacctaagcggggtggta 143522 Query: 144 ttgaaaccagg 154 || || ||||| Sbjct: 143523 ttcaatccagg 143533 Score = 44.1 bits (22), Expect = 0.50 Identities = 43/50 (86%) Strand = Plus / Plus Query: 270 cgtatgaaagcgtagtagtgaccaccatgtactcctccactatgaacaag 319 ||||| || ||||||||||| |||||||| | || |||||||||||||| Sbjct: 144765 cgtataaaggcgtagtagtgtccaccatgaccaccaccactatgaacaag 144814
>gb|AC125195.4| Mus musculus BAC clone RP23-246M2 from 2, complete sequence Length = 195041 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Plus Query: 342 ttcctaatacttctatctgcatct 365 |||||||||||||||||||||||| Sbjct: 128510 ttcctaatacttctatctgcatct 128533
>emb|BX323821.5| Mouse DNA sequence from clone RP24-88B2 on chromosome 2, complete sequence Length = 15911 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Minus Query: 342 ttcctaatacttctatctgcatct 365 |||||||||||||||||||||||| Sbjct: 14365 ttcctaatacttctatctgcatct 14342
>emb|AL773582.6| Mouse DNA sequence from clone RP23-174J23 on chromosome 2, complete sequence Length = 206309 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Plus Query: 342 ttcctaatacttctatctgcatct 365 |||||||||||||||||||||||| Sbjct: 205856 ttcctaatacttctatctgcatct 205879
>ref|XM_553990.1| Anopheles gambiae str. PEST ENSANGP00000028350 (ENSANGG00000004647), partial mRNA Length = 7143 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 456 taatcatattcgaaacgcttcag 478 ||||||||||||||||||||||| Sbjct: 5180 taatcatattcgaaacgcttcag 5158
>ref|XM_319246.2| Anopheles gambiae str. PEST ENSANGP00000006100 (ENSANGG00000004647), partial mRNA Length = 7338 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 456 taatcatattcgaaacgcttcag 478 ||||||||||||||||||||||| Sbjct: 5399 taatcatattcgaaacgcttcag 5377
>ref|XM_946819.1| Theileria annulata strain Ankara hypothetical protein (TA15205) partial mRNA Length = 5007 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 372 agatattttccatcatcctta 392 ||||||||||||||||||||| Sbjct: 2639 agatattttccatcatcctta 2619
>emb|AL390758.6| Human DNA sequence from clone RP11-540C21 on chromosome 10, complete sequence Length = 15250 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 gcaaaacaggggggaaatcaa 507 ||||||||||||||||||||| Sbjct: 1665 gcaaaacaggggggaaatcaa 1645
>emb|AL353801.13| Human DNA sequence from clone RP11-285G1 on chromosome 10 Contains two novel genes, the gene for AD037 protein (AD037), the gene for a decidual protein induced by progesterone (DEPP), a novel gene (FLJ30567), the ZNF22 gene for zinc finger protein 22 (KOX 15), a novel gene and two CpG islands, complete sequence Length = 222490 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 gcaaaacaggggggaaatcaa 507 ||||||||||||||||||||| Sbjct: 222155 gcaaaacaggggggaaatcaa 222135
>emb|BX957219.1| Methanococcus maripaludis S2 complete genome; segment 1/5 Length = 345730 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 ctttttagtatcttcttttgt 223 ||||||||||||||||||||| Sbjct: 59586 ctttttagtatcttcttttgt 59606
>gb|BC061200.1| Mus musculus RIKEN cDNA A530094I17 gene, mRNA (cDNA clone IMAGE:30246422), partial cds Length = 1544 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 524 tcttgcatcctgtaagccat 543 |||||||||||||||||||| Sbjct: 204 tcttgcatcctgtaagccat 223
>gb|BC031988.1| Mus musculus zinc finger protein 87, mRNA (cDNA clone MGC:25780 IMAGE:4017149), complete cds Length = 2659 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 524 tcttgcatcctgtaagccat 543 |||||||||||||||||||| Sbjct: 187 tcttgcatcctgtaagccat 206
>ref|NM_133228.2| Mus musculus zinc finger protein 87 (Zfp87), mRNA Length = 2659 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 524 tcttgcatcctgtaagccat 543 |||||||||||||||||||| Sbjct: 187 tcttgcatcctgtaagccat 206
>gb|U29506.1|MMU29506 Mus musculus KRAB-zinc finger protein 72 (Zfp72) mRNA, partial cds Length = 320 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 524 tcttgcatcctgtaagccat 543 |||||||||||||||||||| Sbjct: 48 tcttgcatcctgtaagccat 67
>gb|AC116392.12| Mus musculus chromosome 10, clone RP23-93D3, complete sequence Length = 275200 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 gaatactttgtgaacttaaa 133 |||||||||||||||||||| Sbjct: 89634 gaatactttgtgaacttaaa 89653
>ref|XM_801199.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511133.30) partial mRNA Length = 4518 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 ctgctcttcaagcgcctttttagt 211 |||||||||||| ||||||||||| Sbjct: 2949 ctgctcttcaagtgcctttttagt 2926
>gb|AC118020.11| Mus musculus, clone RP23-459B19, complete sequence Length = 191669 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 gaatactttgtgaacttaaa 133 |||||||||||||||||||| Sbjct: 6033 gaatactttgtgaacttaaa 6014
>gb|AC087568.3| Pan troglodytes clone RP43-135M11, complete sequence Length = 150199 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 539 gccatgttgttcagcctggt 558 |||||||||||||||||||| Sbjct: 53557 gccatgttgttcagcctggt 53538
>gb|AC091001.3| Papio anubis clone RP41-36M16, complete sequence Length = 177066 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 539 gccatgttgttcagcctggt 558 |||||||||||||||||||| Sbjct: 52982 gccatgttgttcagcctggt 52963
>emb|AL390918.7| Human DNA sequence from clone RP11-569E4 on chromosome 13 Contains part of a novel gene (KIAA0865), possible ortholog of rat myosin heavy chain Myr 8 (Loc192253), complete sequence Length = 83550 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 539 gccatgttgttcagcctggt 558 |||||||||||||||||||| Sbjct: 77516 gccatgttgttcagcctggt 77497
>gb|AY340256.1| Rhodnius prolixus triabin-like lipocalin 1 precursor, mRNA, complete cds Length = 606 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 ttcctaatacttctatctgc 361 |||||||||||||||||||| Sbjct: 360 ttcctaatacttctatctgc 341
>emb|AL031054.1|HS48G12 Human DNA sequence from clone RP1-48G12 on chromosome Xq27.1-27.3 Contains a CpG island, complete sequence Length = 199016 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gccatgttgttcagcctggt 558 |||||||||||||||||||| Sbjct: 44700 gccatgttgttcagcctggt 44719
>emb|AL935257.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 6/11 Length = 302050 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 atcatccttatcaagatcga 402 |||||||||||||||||||| Sbjct: 220987 atcatccttatcaagatcga 221006
>gb|AC025031.30| Homo sapiens 12 BAC RP11-474P2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 223675 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 tcagttgaagttgcaaaaca 494 |||||||||||||||||||| Sbjct: 123935 tcagttgaagttgcaaaaca 123916
>gb|AC103833.2| Homo sapiens chromosome 8, clone RP11-1057N3, complete sequence Length = 204508 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 tcataacggtcattaatcttaacc 440 |||||| ||||||||||||||||| Sbjct: 115887 tcataaaggtcattaatcttaacc 115910
>emb|BX890601.10| Zebrafish DNA sequence from clone CH211-51F19 in linkage group 14, complete sequence Length = 124859 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 487 gcaaaacaggggggaaatcaagaaagag 514 ||||||| || ||||||||||||||||| Sbjct: 70737 gcaaaacgggcgggaaatcaagaaagag 70710
>gb|AC005089.3| Homo sapiens BAC clone CTA-315H11 from 7, complete sequence Length = 177893 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gccatgttgttcagcctggt 558 |||||||||||||||||||| Sbjct: 114108 gccatgttgttcagcctggt 114127
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 7.9 Identities = 38/44 (86%) Strand = Plus / Minus Query: 459 tcatattcgaaacgcttcagttgaagttgcaaaacaggggggaa 502 ||||||||||| | ||||||||| || ||||| ||||| ||||| Sbjct: 34545 tcatattcgaacctcttcagttgcagatgcaacacaggagggaa 34502
>dbj|AK049711.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530043M12 product:KRAB ZINC FINGER PROTEIN homolog [Mus musculus], full insert sequence Length = 2628 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 524 tcttgcatcctgtaagccat 543 |||||||||||||||||||| Sbjct: 203 tcttgcatcctgtaagccat 222
>dbj|AK030724.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730412N24 product:KRAB ZINC FINGER PROTEIN homolog [Mus musculus], full insert sequence Length = 2505 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 524 tcttgcatcctgtaagccat 543 |||||||||||||||||||| Sbjct: 231 tcttgcatcctgtaagccat 250
>ref|XM_573966.1| PREDICTED: Rattus norvegicus similar to regulator of sex-limitation candidate 16 (LOC498682), mRNA Length = 2121 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 524 tcttgcatcctgtaagccat 543 |||||||||||||||||||| Sbjct: 339 tcttgcatcctgtaagccat 358
>gb|AF242377.1|AF242377 Mus musculus KRAB zinc finger protein (Mzf22) mRNA, complete cds Length = 2628 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 524 tcttgcatcctgtaagccat 543 |||||||||||||||||||| Sbjct: 187 tcttgcatcctgtaagccat 206
>ref|NM_211372.1| Eremothecium gossypii AGL357Wp (AGL357W), mRNA Length = 3501 Score = 40.1 bits (20), Expect = 7.9 Identities = 38/44 (86%) Strand = Plus / Minus Query: 459 tcatattcgaaacgcttcagttgaagttgcaaaacaggggggaa 502 ||||||||||| | ||||||||| || ||||| ||||| ||||| Sbjct: 1163 tcatattcgaacctcttcagttgcagatgcaacacaggagggaa 1120
>gb|AC007423.5|AC007423 Homo sapiens chromosome 17, clone RP11-238F2, complete sequence Length = 61306 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 tttttagtatcttcttttgt 223 |||||||||||||||||||| Sbjct: 36139 tttttagtatcttcttttgt 36158
>emb|CT573016.5| Mouse DNA sequence from clone RP23-78E16 on chromosome 13, complete sequence Length = 211097 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 524 tcttgcatcctgtaagccat 543 |||||||||||||||||||| Sbjct: 98790 tcttgcatcctgtaagccat 98809
>emb|CT571249.11| Mouse DNA sequence from clone RP24-92E16 on chromosome 13, complete sequence Length = 125655 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 524 tcttgcatcctgtaagccat 543 |||||||||||||||||||| Sbjct: 7668 tcttgcatcctgtaagccat 7649
>emb|BX897734.11| Zebrafish DNA sequence from clone CH211-194J14, complete sequence Length = 151729 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tttttagtatcttcttttgt 223 |||||||||||||||||||| Sbjct: 63753 tttttagtatcttcttttgt 63734
>dbj|AP000437.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-39H21, complete sequence Length = 150125 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 539 gccatgttgttcagcctggt 558 |||||||||||||||||||| Sbjct: 105664 gccatgttgttcagcctggt 105645 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,999,825 Number of Sequences: 3902068 Number of extensions: 4999825 Number of successful extensions: 100482 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100119 Number of HSP's gapped (non-prelim): 351 length of query: 578 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 555 effective length of database: 17,143,297,704 effective search space: 9514530225720 effective search space used: 9514530225720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
