ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags29h22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY145451.1| Hordeum vulgare actin mRNA, complete cds Length = 1421 Score = 377 bits (190), Expect = e-101 Identities = 208/217 (95%) Strand = Plus / Minus Query: 9 gacaattcccaacaacaaatcaagccaacccaagtttgacaactgatcccacaaacacac 68 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1408 gacaattcccaacaacaaatcaagccaacccaagtttgacaactgatcccacaaacacac 1349 Query: 69 tgacaatgcacaaacatagatagtgtacttgcacttgcaccatggagccgccacgtatat 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1348 tgacaatgcacaaacatagatagtgtacttgcacttgcaccatggagccgccacgtatat 1289 Query: 129 aggtggcgtatcccaagagtacccacgtcacgtctggnnnnnnncatngnttgcaaatac 188 ||||||||||||||||||||||||||||||||||||| ||| | |||||||||| Sbjct: 1288 aggtggcgtatcccaagagtacccacgtcacgtctggaaaaaaacatagcttgcaaatac 1229 Query: 189 gcaatacatttctagaagaatgaaccaaacataaccg 225 ||||||||||||||||||||||||||||||||||||| Sbjct: 1228 gcaatacatttctagaagaatgaaccaaacataaccg 1192
>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence Length = 153766 Score = 309 bits (156), Expect = 2e-81 Identities = 195/210 (92%), Gaps = 2/210 (0%) Strand = Plus / Plus Query: 17 ccaacaacaaatcaagccaacccaagtttgacaactgatcccacaaacacactgacaatg 76 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 8977 ccaacaacaaatcaagccaacccaagtttgacaactgatctcacaaacacactgacaata 9036 Query: 77 cacaaacatagata--gtgtacttgcacttgcaccatggagccgccacgtatataggtgg 134 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9037 cacaaacatagatatagtgtacttgcacttgcaccatggagccgccacgtatataggtgg 9096 Query: 135 cgtatcccaagagtacccacgtcacgtctggnnnnnnncatngnttgcaaatacgcaata 194 | |||||||||||||| |||||||||||||| ||| | |||||||||||||||| Sbjct: 9097 catatcccaagagtactcacgtcacgtctggaaaaaaacatagcttgcaaatacgcaata 9156 Query: 195 catttctagaagaatgaaccaaacataacc 224 |||||||||||||||||||||||||||||| Sbjct: 9157 catttctagaagaatgaaccaaacataacc 9186
>gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156G16, complete sequence Length = 187012 Score = 283 bits (143), Expect = 1e-73 Identities = 194/212 (91%), Gaps = 4/212 (1%) Strand = Plus / Plus Query: 17 ccaacaacaaatcaagccaacccaagtttgacaactgatcccacaaacacactg--acaa 74 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct: 17585 ccaacaacaaatcaagccaacccaagtttgacaactgatctcacaaacacactgtgacaa 17644 Query: 75 tgcacaaacatagata--gtgtacttgcacttgcaccatggagccgccacgtatataggt 132 | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 17645 tacacaaacatagatatagtgtacttgcacttgcaccatggagccgccacgtatataggt 17704 Query: 133 ggcgtatcccaagagtacccacgtcacgtctggnnnnnnncatngnttgcaaatacgcaa 192 || |||||||||||||| |||||||||||||| ||| | |||||||||||||| Sbjct: 17705 agcatatcccaagagtactcacgtcacgtctggaaaaaaacatagcttgcaaatacgcaa 17764 Query: 193 tacatttctagaagaatgaaccaaacataacc 224 |||||||||||||||||||||||||||||||| Sbjct: 17765 tacatttctagaagaatgaaccaaacataacc 17796
>gb|AC137844.8| Mus musculus, clone RP23-415L22, complete sequence Length = 188189 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 18 caacaacaaatcaagccaacccaa 41 ||||||||||||||||||| |||| Sbjct: 118173 caacaacaaatcaagccaaaccaa 118150
>gb|AC154879.10| Mus musculus chromosome 1, clone RP24-276N20, complete sequence Length = 199527 Score = 40.1 bits (20), Expect = 2.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 14 ttcccaacaacaaatcaagccaacccaagttt 45 |||||||||| ||||| || |||||||||||| Sbjct: 65709 ttcccaacaataaatcgagtcaacccaagttt 65740
>gb|AC009118.11| Homo sapiens chromosome 16 clone RP11-481J2, complete sequence Length = 187988 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tacaggacaattcccaacaa 23 |||||||||||||||||||| Sbjct: 101625 tacaggacaattcccaacaa 101606
>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome Length = 1584804 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gaatgaaccaaacataaccg 225 |||||||||||||||||||| Sbjct: 1010549 gaatgaaccaaacataaccg 1010568 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,747,114 Number of Sequences: 3902068 Number of extensions: 1747114 Number of successful extensions: 124365 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 124333 Number of HSP's gapped (non-prelim): 26 length of query: 225 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 203 effective length of database: 17,147,199,772 effective search space: 3480881553716 effective search space used: 3480881553716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
