ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags29h21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SAS10_YEAST (Q12136) Something about silencing protein 10 (U3 sm... 30 5.3
2RELN_HUMAN (P78509) Reelin precursor (EC 3.4.21.-) 30 9.1

>SAS10_YEAST (Q12136) Something about silencing protein 10 (U3 small nucleolar|
           RNA-associated protein 3) (U3 snoRNA-associated protein
           11)
          Length = 610

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 573 HLEEVILHPQVSQETQKQWEKAAEDHPNGPKVLLFKSGDEAESSNDQLN 427
           HLEE+ ++  + +E +++W K+A++   G      K  D   S  D LN
Sbjct: 155 HLEELNMNDYLDEEEEEEWVKSAKEFDMGEFKNSTKQADTKTSITDILN 203



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>RELN_HUMAN (P78509) Reelin precursor (EC 3.4.21.-)|
          Length = 3460

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 540 SQETQKQWEKAAEDHPNGPKVLLFKSGDEAESSNDQLNPAFSRMGISEVCPP 385
           +++ Q+QW +  E  P G  VL    G E  +    L+  F + G  ++C P
Sbjct: 413 TEDIQEQWSEEFESQPTGWDVLGAVIGTECGTIESGLSMVFLKDGERKLCTP 464


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,630,387
Number of Sequences: 219361
Number of extensions: 1966904
Number of successful extensions: 4965
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4965
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6856295237
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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