>RER1A_ARATH (O48670) RER1A protein (AtRER1A)|
          Length = 191

 Score =  122 bits (307), Expect = 4e-28
 Identities = 51/59 (86%), Positives = 58/59 (98%)
 Frame = -2

Query: 473 FKFWYAITKAFCVAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMKRQILHMVKYKYVPF 297
           FKFWY++TKAFC+AF+MTFFSVFDVPVFWPILLCYWIVLFVLTM+RQI HM+KYKY+PF
Sbjct: 115 FKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPF 173

>RER1B_ARATH (O48671) RER1B protein (AtRER1B)|
          Length = 195

 Score =  120 bits (301), Expect = 2e-27
 Identities = 49/59 (83%), Positives = 58/59 (98%)
 Frame = -2

Query: 473 FKFWYAITKAFCVAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMKRQILHMVKYKYVPF 297
           FKFWY++TKAFC+AF+MTFFSVFDVPVFWPILLCYW+VLFVLTM+RQI HM+K+KY+PF
Sbjct: 114 FKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPF 172

>RER1C_ARATH (Q9ZWI7) RER1C protein (AtRER1C)|
          Length = 212

 Score =  100 bits (249), Expect = 2e-21
 Identities = 41/59 (69%), Positives = 51/59 (86%)
 Frame = -2

Query: 473 FKFWYAITKAFCVAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMKRQILHMVKYKYVPF 297
           FKFW +I +AF + F+MTFF VFDVPVFWPILL YW++LF LTM++QI HM+KY+YVPF
Sbjct: 136 FKFWLSIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPF 194

>RER1_HUMAN (O15258) RER1 protein|
          Length = 196

 Score = 92.4 bits (228), Expect = 5e-19
 Identities = 39/59 (66%), Positives = 48/59 (81%)
 Frame = -2

Query: 473 FKFWYAITKAFCVAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMKRQILHMVKYKYVPF 297
           FKFW+A TK   VA V TFF  F+VPVFWPIL+ Y+I+LF +TMKRQI HM+KY+Y+PF
Sbjct: 119 FKFWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177

>RER1_MOUSE (Q9CQU3) RER1 protein|
          Length = 196

 Score = 92.0 bits (227), Expect = 7e-19
 Identities = 38/59 (64%), Positives = 48/59 (81%)
 Frame = -2

Query: 473 FKFWYAITKAFCVAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMKRQILHMVKYKYVPF 297
           FKFW+A TK   VA + TFF  F+VPVFWPIL+ Y+I+LF +TMKRQI HM+KY+Y+PF
Sbjct: 119 FKFWHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177

>YAF8_CAEEL (P52879) Hypothetical protein F46C5.8 in chromosome II|
          Length = 191

 Score = 87.0 bits (214), Expect = 2e-17
 Identities = 35/59 (59%), Positives = 46/59 (77%)
 Frame = -2

Query: 473 FKFWYAITKAFCVAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMKRQILHMVKYKYVPF 297
           FKFW++  KA  +A   TFF  FDVPVFWPIL+ Y+ +L  LT+KRQI+HM+KY+Y+PF
Sbjct: 114 FKFWHSFMKATLIAITCTFFEFFDVPVFWPILVMYFFILTFLTLKRQIMHMIKYRYIPF 172

>RER1_YEAST (P25560) Protein RER1 (Retention of ER proteins 1)|
          Length = 188

 Score = 86.3 bits (212), Expect = 4e-17
 Identities = 34/58 (58%), Positives = 48/58 (82%)
 Frame = -2

Query: 473 FKFWYAITKAFCVAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMKRQILHMVKYKYVP 300
           FKFWY   +A  ++ +++ FS+FD+PVFWPILL Y+I+LF LTM+RQI HM+KY+Y+P
Sbjct: 118 FKFWYNSIRATVISLLLSLFSIFDIPVFWPILLMYFILLFFLTMRRQIQHMIKYRYIP 175

>RER1_SACPS (P79003) Protein RER1 (Retention of ER proteins 1)|
          Length = 188

 Score = 86.3 bits (212), Expect = 4e-17
 Identities = 34/58 (58%), Positives = 48/58 (82%)
 Frame = -2

Query: 473 FKFWYAITKAFCVAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMKRQILHMVKYKYVP 300
           FKFWY   +A  ++ V++ FS+FD+PVFWPILL Y+++LF LTM+RQI HM+KY+Y+P
Sbjct: 118 FKFWYNSIRATVISLVLSLFSIFDIPVFWPILLMYFVLLFFLTMRRQIQHMMKYRYIP 175

>RER1_SCHPO (Q10358) Protein rer1 (Retention of ER proteins 1)|
          Length = 184

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 34/59 (57%), Positives = 44/59 (74%)
 Frame = -2

Query: 473 FKFWYAITKAFCVAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMKRQILHMVKYKYVPF 297
           FKFWY+  +A   A V +FF +FDVPVFWPIL+ Y++VL     +RQI HM+KY+YVPF
Sbjct: 116 FKFWYSSMRATLFALVASFFRIFDVPVFWPILVVYYLVLSFFCFRRQIQHMLKYRYVPF 174

>JAM2_MOUSE (Q9JI59) Junctional adhesion molecule B precursor (JAM-B)|
           (Junctional adhesion molecule 2) (Vascular endothelial
           junction-associated molecule) (VE-JAM) (CD322 antigen)
          Length = 298

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 339 LHCQDKEHNPIAE*YWPEDG 398
           L CQDKE NP  E  W +DG
Sbjct: 154 LRCQDKEGNPAPEYIWFKDG 173

>JAM2_HUMAN (P57087) Junctional adhesion molecule B precursor (JAM-B)|
           (Junctional adhesion molecule 2) (Vascular endothelial
           junction-associated molecule) (VE-JAM) (CD322 antigen)
          Length = 298

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 339 LHCQDKEHNPIAE*YWPEDG 398
           L CQDKE NP  E  W +DG
Sbjct: 153 LRCQDKEGNPAPEYTWFKDG 172


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,178,157
Number of Sequences: 219361
Number of extensions: 1294723
Number of successful extensions: 3177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3177
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)