ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags29h12 |
|---|---|
| Clone Library Name | barley_pub |
>TFS2_SCHPO (P49373) Transcription elongation factor S-II (TFIIS)| Length = 293 Score = 84.7 bits (208), Expect = 6e-17 Identities = 36/68 (52%), Positives = 48/68 (70%) Frame = -3 Query: 230 RKLENQQIKEKALFDCERASAPKASTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 51 R+ E+ +++++ LF + A KA TD F CG+C Q+K +YYQ+QTRSADEPMTTF C Sbjct: 225 RRKEDAKLEQENLFHAQGAKPQKAVTDLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECT 284 Query: 50 NCNNHWKF 27 C N WKF Sbjct: 285 VCGNRWKF 292
>TFS2_YEAST (P07273) Transcription elongation factor S-II (DNA strand transfer| protein alpha) (STP-alpha) (DNA strand transferase 1) (Pyrimidine pathway regulatory protein 2) Length = 309 Score = 81.3 bits (199), Expect = 6e-16 Identities = 33/67 (49%), Positives = 50/67 (74%) Frame = -3 Query: 227 KLENQQIKEKALFDCERASAPKASTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVN 48 K + ++I ++ L++ + A+ ++ TD+F CG+C ++K +YYQLQTRSADEP+TTF TC Sbjct: 242 KQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEA 301 Query: 47 CNNHWKF 27 C N WKF Sbjct: 302 CGNRWKF 308
>TFS2_DROME (P20232) Transcription elongation factor S-II (RNA polymerase II| elongation factor DMS-II) (TFIIS) Length = 313 Score = 79.7 bits (195), Expect = 2e-15 Identities = 37/71 (52%), Positives = 46/71 (64%) Frame = -3 Query: 236 DARKLENQQIKEKALFDCERASAPKASTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVT 57 + +KL + +KE A+ D + A+ TD KC +C +R TY QLQTRSADEPMTTFV Sbjct: 244 EMKKLREKFVKE-AINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVM 302 Query: 56 CVNCNNHWKFC 24 C C N WKFC Sbjct: 303 CNECGNRWKFC 313
>TFS2_CAEEL (P52652) Putative transcription elongation factor S-II (TFIIS)| Length = 308 Score = 79.0 bits (193), Expect = 3e-15 Identities = 34/71 (47%), Positives = 49/71 (69%) Frame = -3 Query: 236 DARKLENQQIKEKALFDCERASAPKASTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVT 57 + R++ ++ KE A+ + + + +D FKCG+CG++ TY QLQTRS+DEPMTTFV Sbjct: 239 EIREMRDKFTKE-AILEHQMSVQQGTPSDMFKCGKCGKKNCTYTQLQTRSSDEPMTTFVF 297 Query: 56 CVNCNNHWKFC 24 C+ C N WKFC Sbjct: 298 CLECGNRWKFC 308
>TCEA1_RAT (Q4KLL0) Transcription elongation factor A protein 1 (Transcription| elongation factor S-II protein 1) Length = 301 Score = 75.5 bits (184), Expect = 3e-14 Identities = 33/71 (46%), Positives = 44/71 (61%) Frame = -3 Query: 236 DARKLENQQIKEKALFDCERASAPKASTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVT 57 D K + + ++A+ + + A TD F CG+C ++ TY Q+QTRSADEPMTTFV Sbjct: 231 DELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVV 290 Query: 56 CVNCNNHWKFC 24 C C N WKFC Sbjct: 291 CNECGNRWKFC 301
>TCEA1_MOUSE (P10711) Transcription elongation factor A protein 1 (Transcription| elongation factor S-II protein 1) (Transcription elongation factor TFIIS.o) Length = 301 Score = 75.5 bits (184), Expect = 3e-14 Identities = 33/71 (46%), Positives = 44/71 (61%) Frame = -3 Query: 236 DARKLENQQIKEKALFDCERASAPKASTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVT 57 D K + + ++A+ + + A TD F CG+C ++ TY Q+QTRSADEPMTTFV Sbjct: 231 DELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVV 290 Query: 56 CVNCNNHWKFC 24 C C N WKFC Sbjct: 291 CNECGNRWKFC 301
>TCEA1_HUMAN (P23193) Transcription elongation factor A protein 1 (Transcription| elongation factor S-II protein 1) (Transcription elongation factor TFIIS.o) Length = 301 Score = 75.5 bits (184), Expect = 3e-14 Identities = 33/71 (46%), Positives = 44/71 (61%) Frame = -3 Query: 236 DARKLENQQIKEKALFDCERASAPKASTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVT 57 D K + + ++A+ + + A TD F CG+C ++ TY Q+QTRSADEPMTTFV Sbjct: 231 DELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVV 290 Query: 56 CVNCNNHWKFC 24 C C N WKFC Sbjct: 291 CNECGNRWKFC 301
>TCEA3_HUMAN (O75764) Transcription elongation factor A protein 3 (Transcription| elongation factor S-II protein 3) (Transcription elongation factor TFIIS.h) Length = 348 Score = 74.7 bits (182), Expect = 6e-14 Identities = 34/71 (47%), Positives = 46/71 (64%) Frame = -3 Query: 236 DARKLENQQIKEKALFDCERASAPKASTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVT 57 + R+L N +E A+ + + A +TD F+C +C ++ TY Q+QTRSADEPMTTFV Sbjct: 279 ELRELRNAMTQE-AIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVL 337 Query: 56 CVNCNNHWKFC 24 C C N WKFC Sbjct: 338 CNECGNRWKFC 348
>TCEA3_MOUSE (P23881) Transcription elongation factor A protein 3 (Transcription| elongation factor S-II protein 3) (Transcription elongation factor TFIIS.h) Length = 347 Score = 72.8 bits (177), Expect = 2e-13 Identities = 33/71 (46%), Positives = 45/71 (63%) Frame = -3 Query: 236 DARKLENQQIKEKALFDCERASAPKASTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVT 57 + R+L N +E A+ + + A +TD +C +C ++ TY Q+QTRSADEPMTTFV Sbjct: 278 ELRELRNAMTQE-AIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVL 336 Query: 56 CVNCNNHWKFC 24 C C N WKFC Sbjct: 337 CNECGNRWKFC 347
>TCEA2_HUMAN (Q15560) Transcription elongation factor A protein 2 (Transcription| elongation factor S-II protein 2) (Testis-specific S-II) (Transcription elongation factor TFIIS.l) Length = 299 Score = 72.8 bits (177), Expect = 2e-13 Identities = 32/71 (45%), Positives = 44/71 (61%) Frame = -3 Query: 236 DARKLENQQIKEKALFDCERASAPKASTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVT 57 D K + + ++A+ + + A TD F CG+C ++ TY Q+QTRS+DEPMTTFV Sbjct: 229 DELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVV 288 Query: 56 CVNCNNHWKFC 24 C C N WKFC Sbjct: 289 CNECGNRWKFC 299
>TCEA2_RAT (Q63799) Transcription elongation factor A protein 2 (Transcription| elongation factor S-II protein 2) (Testis-specific S-II) (Protein S-II-T1) (Transcription elongation factor TFIIS.l) Length = 299 Score = 69.3 bits (168), Expect = 2e-12 Identities = 30/71 (42%), Positives = 43/71 (60%) Frame = -3 Query: 236 DARKLENQQIKEKALFDCERASAPKASTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVT 57 D K + + ++A+ + + A TD F C +C ++ TY Q+QTRS+DEPMTT+V Sbjct: 229 DELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVV 288 Query: 56 CVNCNNHWKFC 24 C C N WKFC Sbjct: 289 CNECGNRWKFC 299
>TCEA2_MOUSE (Q9QVN7) Transcription elongation factor A protein 2 (Transcription| elongation factor S-II protein 2) (Testis-specific S-II) (Protein S-II-T1) (Transcription elongation factor TFIIS.l) Length = 299 Score = 69.3 bits (168), Expect = 2e-12 Identities = 30/71 (42%), Positives = 43/71 (60%) Frame = -3 Query: 236 DARKLENQQIKEKALFDCERASAPKASTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVT 57 D K + + ++A+ + + A TD F C +C ++ TY Q+QTRS+DEPMTT+V Sbjct: 229 DELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVV 288 Query: 56 CVNCNNHWKFC 24 C C N WKFC Sbjct: 289 CNECGNRWKFC 299
>RPC11_YEAST (Q04307) DNA-directed RNA polymerases III 12.5 kDa polypeptide (EC| 2.7.7.6) Length = 110 Score = 52.8 bits (125), Expect = 2e-07 Identities = 21/34 (61%), Positives = 24/34 (70%) Frame = -3 Query: 131 CGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWK 30 CG ++QLQ RSADEPMTTF CVNC + WK Sbjct: 75 CGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWK 108
>TFS2_ASFB7 (P27948) Transcription factor S-II-related protein| Length = 243 Score = 47.0 bits (110), Expect = 1e-05 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = -3 Query: 209 IKEKALFDCERASAPKASTDQ-FKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHW 33 +KEK T Q +KC C QR TY ++QTR+ DEP T F TC C + + Sbjct: 182 LKEKTEITLRSQQKVAEKTSQLYKCPNCKQRMCTYREVQTRALDEPSTIFCTCKKCGHEF 241
>RPC11_HUMAN (Q9Y2Y1) DNA-directed RNA polymerases III 12.5 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase III C11 subunit) (HsC11p) (hRPC11) Length = 108 Score = 47.0 bits (110), Expect = 1e-05 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Frame = -3 Query: 230 RKLENQQI-KEKALFDCERASAPKASTDQF--KCGRCGQRKTTYYQLQTRSADEPMTTFV 60 RK+ N++ K K + D +A + D C +C + + QLQTRSADEPMTTF Sbjct: 36 RKVTNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFY 95 Query: 59 TCVN--CNNHWK 30 C N C + W+ Sbjct: 96 KCCNAQCGHRWR 107
>RPC11_MOUSE (Q9CQZ7) DNA-directed RNA polymerases III 12.5 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase III C11 subunit) Length = 108 Score = 46.6 bits (109), Expect = 2e-05 Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 2/39 (5%) Frame = -3 Query: 140 CGRCGQRKTTYYQLQTRSADEPMTTFVTCVN--CNNHWK 30 C +C + + QLQTRSADEPMTTF C N C + W+ Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
>RPA12_RAT (Q6MFY5) DNA-directed RNA polymerase I subunit 12 (EC 2.7.7.6)| (Nuclear RNA polymerase I small specific subunit Rpa12) (Zinc ribbon domain-containing protein 1) Length = 123 Score = 45.8 bits (107), Expect = 3e-05 Identities = 18/33 (54%), Positives = 20/33 (60%) Frame = -3 Query: 143 KCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 45 +C RCG YY Q RSADE T F TC+NC Sbjct: 83 RCSRCGHEGMAYYTRQMRSADEGQTVFYTCINC 115
>RPA12_MOUSE (Q791N7) DNA-directed RNA polymerase I subunit 12 (EC 2.7.7.6)| (Nuclear RNA polymerase I small specific subunit Rpa12) (Zinc ribbon domain-containing protein 1) Length = 123 Score = 45.4 bits (106), Expect = 4e-05 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 9/73 (12%) Frame = -3 Query: 236 DARKLENQQIKEKALFDCERASAPKASTD---------QFKCGRCGQRKTTYYQLQTRSA 84 D R E + +K +F+ A+ P + + +C RCG Y+ Q RSA Sbjct: 43 DVRDCEGKVVKTSVVFNKLGATIPLSVDEGPELQGPVIDRRCPRCGHEGMAYHTRQMRSA 102 Query: 83 DEPMTTFVTCVNC 45 DE T F TC+NC Sbjct: 103 DEGQTVFYTCINC 115
>RPC11_SCHPO (O13896) DNA-directed RNA polymerases III 12.5 kDa polypeptide (EC| 2.7.7.6) Length = 109 Score = 44.3 bits (103), Expect = 9e-05 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = -3 Query: 134 RCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWK 30 +C + ++QLQ RSADEPM+TF C C W+ Sbjct: 73 KCDNNRAYFFQLQIRSADEPMSTFYRCTKCKFQWR 107
>RPOM_SULAC (Q07271) DNA-directed RNA polymerase subunit M (EC 2.7.7.6)| Length = 111 Score = 43.9 bits (102), Expect = 1e-04 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = -3 Query: 206 KEKAL-FDCERASAPKASTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWK 30 KEK L + + T C CG + ++ LQTRSADEP T F C C W+ Sbjct: 49 KEKTLVLESDMPKTGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWR 108
>RPOM_THECE (Q56254) DNA-directed RNA polymerase subunit M (EC 2.7.7.6)| Length = 110 Score = 43.9 bits (102), Expect = 1e-04 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -3 Query: 155 TDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWK 30 T + C +CG ++++QTR+ DEP T F C C + W+ Sbjct: 66 TTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 107
>RPOM_METJA (Q58548) DNA-directed RNA polymerase subunit M (EC 2.7.7.6)| Length = 108 Score = 43.9 bits (102), Expect = 1e-04 Identities = 19/64 (29%), Positives = 32/64 (50%) Frame = -3 Query: 221 ENQQIKEKALFDCERASAPKASTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCN 42 E+ + K++ + E T + +C +CG + ++ QTR ADEP T F C C Sbjct: 42 EHLENKKEKITVIESEGLETLPTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKCKKCG 101 Query: 41 NHWK 30 + W+ Sbjct: 102 HTWR 105
>RPA9_YEAST (P32529) DNA-directed RNA polymerase I 13.7 kDa polypeptide (EC| 2.7.7.6) (A12.2) Length = 125 Score = 43.1 bits (100), Expect = 2e-04 Identities = 18/38 (47%), Positives = 24/38 (63%) Frame = -3 Query: 158 STDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 45 +T + KC +CG + Y+ LQ RSADE T F TC +C Sbjct: 80 ATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTSC 117
>RPA12_MACMU (Q5TM50) DNA-directed RNA polymerase I subunit 12 (EC 2.7.7.6)| (Nuclear RNA polymerase I small specific subunit Rpa12) (Zinc ribbon domain-containing protein 1) Length = 126 Score = 42.0 bits (97), Expect = 4e-04 Identities = 17/33 (51%), Positives = 19/33 (57%) Frame = -3 Query: 143 KCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 45 +C RCG Y+ Q RSADE T F TC NC Sbjct: 86 RCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 118
>RPA12_HUMAN (Q9P1U0) DNA-directed RNA polymerase I subunit 12 (EC 2.7.7.6)| (Nuclear RNA polymerase I small specific subunit Rpa12) (Zinc ribbon domain-containing protein 1) Length = 126 Score = 42.0 bits (97), Expect = 4e-04 Identities = 17/33 (51%), Positives = 19/33 (57%) Frame = -3 Query: 143 KCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 45 +C RCG Y+ Q RSADE T F TC NC Sbjct: 86 RCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 118
>RPA9_SCHPO (O94703) DNA-directed RNA polymerase I 13.1 kDa polypeptide (EC| 2.7.7.6) Length = 119 Score = 41.2 bits (95), Expect = 7e-04 Identities = 18/40 (45%), Positives = 24/40 (60%) Frame = -3 Query: 164 KASTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 45 +A+T + KC +CG T++ LQ RSADE T F C C Sbjct: 72 EAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRC 111
>RPOM_METTH (O27369) DNA-directed RNA polymerase subunit M (EC 2.7.7.6)| Length = 136 Score = 40.8 bits (94), Expect = 0.001 Identities = 20/67 (29%), Positives = 32/67 (47%) Frame = -3 Query: 230 RKLENQQIKEKALFDCERASAPKASTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 51 R E + KE +F + + T + +C +CG + ++ QTR ADE T F C Sbjct: 69 RVSEEVEAKETIIFTGDDVNT--LPTTRVECPKCGNMEAFWWLQQTRRADESETRFFRCT 126 Query: 50 NCNNHWK 30 C + W+ Sbjct: 127 RCKHTWR 133
>RPB9_DROME (P36958) DNA-directed RNA polymerase II 15.1 kDa polypeptide (EC| 2.7.7.6) Length = 129 Score = 39.7 bits (91), Expect = 0.002 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Frame = -3 Query: 155 TDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV--NCNNHW 33 T+ C +C R+ ++Q QTR A+E M + C NC + W Sbjct: 85 TEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRW 127
>RPO5_VARV (P33796) DNA-directed RNA polymerase 30 kDa polypeptide (EC| 2.7.7.6) Length = 259 Score = 37.7 bits (86), Expect = 0.008 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = -3 Query: 140 CGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWK 30 C C R TT +QTR+ADEP C +C H+K Sbjct: 159 CPNCKSRNTTPMMIQTRAADEPPLVRHACRDCKQHFK 195
>RPO5_VACCV (P21603) DNA-directed RNA polymerase 30 kDa polypeptide (EC| 2.7.7.6) Length = 259 Score = 37.7 bits (86), Expect = 0.008 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = -3 Query: 140 CGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWK 30 C C R TT +QTR+ADEP C +C H+K Sbjct: 159 CPNCKSRNTTPMMIQTRAADEPPLVRHACRDCKQHFK 195
>RPO5_VACCC (P21082) DNA-directed RNA polymerase 30 kDa polypeptide (EC| 2.7.7.6) Length = 259 Score = 37.7 bits (86), Expect = 0.008 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = -3 Query: 140 CGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWK 30 C C R TT +QTR+ADEP C +C H+K Sbjct: 159 CPNCKSRNTTPMMIQTRAADEPPLVRHACRDCKQHFK 195
>RPO5_VACCA (O57187) DNA-directed RNA polymerase 30 kDa polypeptide (EC| 2.7.7.6) Length = 259 Score = 37.7 bits (86), Expect = 0.008 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = -3 Query: 140 CGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWK 30 C C R TT +QTR+ADEP C +C H+K Sbjct: 159 CPNCKSRNTTPMMIQTRAADEPPLVRHACRDCKQHFK 195
>RPB9_SCHPO (O74635) DNA-directed RNA polymerase II subunit 9 (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.2 kDa polypeptide) Length = 113 Score = 35.4 bits (80), Expect = 0.040 Identities = 14/46 (30%), Positives = 22/46 (47%) Frame = -3 Query: 182 ERASAPKASTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 45 + ++ P +C RC Q + +YQ +R D MT CV+C Sbjct: 61 DASTDPTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHC 106
>RPOM_ARCFU (O29033) DNA-directed RNA polymerase subunit M (EC 2.7.7.6)| Length = 103 Score = 33.1 bits (74), Expect = 0.20 Identities = 12/37 (32%), Positives = 17/37 (45%) Frame = -3 Query: 140 CGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWK 30 C CG + ++ Q R+ADE F C C W+ Sbjct: 64 CPACGHNEAFWWLRQLRAADESEVRFFRCTKCGKTWR 100
>RPB9_ENCCU (Q8SQU1) DNA-directed RNA polymerase II subunit 9 (EC 2.7.7.6)| Length = 108 Score = 32.7 bits (73), Expect = 0.26 Identities = 13/45 (28%), Positives = 20/45 (44%) Frame = -3 Query: 167 PKASTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHW 33 P + + CG CG K Y+Q + D ++ F C C + W Sbjct: 63 PTLPSVKINCGNCGFNKGLYFQPRGGEEDVALSIFYLCCRCYHLW 107
>CYSC1_BACHD (Q9KCT0) Probable adenylyl-sulfate kinase (EC 2.7.1.25) (APS| kinase) (Adenosine-5'phosphosulfate kinase) (ATP adenosine-5'-phosphosulfate 3'-phosphotransferase) Length = 202 Score = 31.2 bits (69), Expect = 0.75 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +1 Query: 130 HRPHLNWSVDALGAEARSQSNRAFSLICWFSSLRAS 237 ++PH+ W ++ E R + NR S + WF+ L S Sbjct: 5 NQPHIVWHEASVSKEERQKRNRLKSCVVWFTGLSGS 40
>RPO5_FOWPV (Q9J5C0) DNA-directed RNA polymerase 30 kDa polypeptide (EC| 2.7.7.6) Length = 182 Score = 30.8 bits (68), Expect = 0.98 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = -3 Query: 143 KCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHW 33 +C C T LQTRS+DE T V C +C ++ Sbjct: 138 RCVACKSNNTIPMILQTRSSDEEPTVRVVCKDCGKNF 174
>LRP4_RAT (Q9QYP1) Low-density lipoprotein receptor-related protein 4| precursor (Multiple epidermal growth factor-like domains 7) Length = 1905 Score = 30.0 bits (66), Expect = 1.7 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 3/27 (11%) Frame = -3 Query: 188 DCERASAPKASTDQFKC--GRC-GQRK 117 +CE +P+ ++DQF C GRC GQRK Sbjct: 303 NCENTGSPQCASDQFLCWNGRCIGQRK 329
>LRP4_MOUSE (Q8VI56) Low-density lipoprotein receptor-related protein 4| precursor (LDLR dan) Length = 1905 Score = 30.0 bits (66), Expect = 1.7 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 3/27 (11%) Frame = -3 Query: 188 DCERASAPKASTDQFKC--GRC-GQRK 117 +CE +P+ ++DQF C GRC GQRK Sbjct: 303 NCENTGSPQCASDQFLCWNGRCIGQRK 329
>LRP4_HUMAN (O75096) Low-density lipoprotein receptor-related protein 4| precursor (Multiple epidermal growth factor-like domains 7) Length = 1950 Score = 29.3 bits (64), Expect = 2.8 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 3/27 (11%) Frame = -3 Query: 188 DCERASAPKASTDQFKC--GRC-GQRK 117 +CE +P+ + DQF C GRC GQRK Sbjct: 348 NCENTGSPQCALDQFLCWNGRCIGQRK 374 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,786,075 Number of Sequences: 219361 Number of extensions: 339867 Number of successful extensions: 1278 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 1219 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1277 length of database: 80,573,946 effective HSP length: 54 effective length of database: 68,728,452 effective search space used: 1649482848 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
