>HUWE1_MOUSE (Q7TMY8) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)|
            (E3 ubiquitin protein ligase URE-B1) (E3Histone)
          Length = 4377

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
 Frame = -1

Query: 350  EAYTPEEQSNGADESAEPASDGAQDEHVGEQMDT--------DKDDPSQA*EVSI*EDFM 195
            E +T EE S+G++E  + + D  ++E   E+ D         D+DD     E+ + ED+ 
Sbjct: 2413 EEHTQEEDSSGSNEDEDDSQDEEEEEEEDEEDDQEDDEGEEGDEDDDDDGSEMELDEDYP 2472

Query: 194  SMIGCAIV 171
             M    +V
Sbjct: 2473 DMNASPLV 2480

>HUWE1_HUMAN (Q7Z6Z7) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)|
            (E3 ubiquitin protein ligase URE-B1) (Mcl-1 ubiquitin
            ligase E3) (Mule) (ARF-binding protein 1) (ARF-BP1)
          Length = 4374

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
 Frame = -1

Query: 350  EAYTPEEQSNGADESAEPASDGAQDEHVGEQMDT--------DKDDPSQA*EVSI*EDFM 195
            E +T EE S+G++E  + + D  ++E   E+ D         D+DD     E+ + ED+ 
Sbjct: 2413 EEHTQEEDSSGSNEDEDDSQDEEEEEEEDEEDDQEDDEGEEGDEDDDDDGSEMELDEDYP 2472

Query: 194  SMIGCAIV 171
             M    +V
Sbjct: 2473 DMNASPLV 2480

>PTMS_HUMAN (P20962) Parathymosin|
          Length = 101

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 335 EEQSNGADESAEPASDGAQDEHVGEQMDTDKDD 237
           EE+ NGA+E  E  ++  ++E  GE+ D ++++
Sbjct: 38  EEEENGAEEEEEETAEDGEEEDEGEEEDEEEEE 70

>PTMS_MOUSE (Q9D0J8) Parathymosin|
          Length = 100

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = -1

Query: 335 EEQSNGADESAEPASDGAQDEHVGEQMDTDKDDPSQ 228
           EE+ NGA+E  E  ++  +D+  G++ D ++++  +
Sbjct: 38  EEEENGAEEEEEETAEDGEDDDEGDEEDEEEEEEDE 73

>PTMS_RAT (P04550) Parathymosin (Zinc-binding 11.5 kDa protein)|
          Length = 101

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = -1

Query: 335 EEQSNGADESAEPASDGAQDEHVGEQMDTDKDD 237
           EE+ NGA+E  E  ++  +D+  G++ D ++++
Sbjct: 38  EEEENGAEEEEEETAEDGEDDDEGDEEDEEEEE 70

>ULE1B_HUMAN (Q9UBT2) Ubiquitin-like 1-activating enzyme E1B (SUMO-1-activating|
           enzyme subunit 2) (Anthracycline-associated resistance
           ARX)
          Length = 640

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = -1

Query: 326 SNGADESAEPASDGAQDEHVGEQMDTDKDDPSQA*EVS 213
           +NG+D+ A+P++  AQ++     +D+D++D S   +VS
Sbjct: 567 TNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVS 604

>YAD7_YEAST (P39728) Hypothetical 30.5 kDa protein in PYK1-SNC1 intergenic|
           region
          Length = 267

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +1

Query: 88  LQKLSM-FYSYPHNV*KQPFLLSP*QAKSTIAQPIMDIKSSQIDTSYAWEGSSLSVSICS 264
           LQKL    Y  P  +  QP LL     K  I   +   K +   T Y    +S+ V++CS
Sbjct: 16  LQKLDTNVYFGPCEILTQPILLQYENIKFIIGVNLSTEKIASFYTQYFRNSNSVVVNLCS 75

Query: 265 PTCSS*APSLA 297
           PT ++ A   A
Sbjct: 76  PTTAAVATKKA 86

>PTMS_BOVIN (P08814) Parathymosin|
          Length = 101

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = -1

Query: 335 EEQSNGADESAEPASDGAQDEHVGEQMDTDKDD 237
           EE+ NGA+E  E  ++  ++E  G++ D ++++
Sbjct: 38  EEEENGAEEEEEETAEDGEEEDDGDEEDEEEEE 70

>ULE1B_MOUSE (Q9Z1F9) Ubiquitin-like 1-activating enzyme E1B (SUMO-1-activating|
           enzyme subunit 2) (Anthracycline-associated resistance
           ARX)
          Length = 638

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 12/38 (31%), Positives = 26/38 (68%)
 Frame = -1

Query: 326 SNGADESAEPASDGAQDEHVGEQMDTDKDDPSQA*EVS 213
           +NG+D+ A+P++  AQ++     +D+D++ PS + + S
Sbjct: 565 ANGSDDGAQPSTSTAQEQDDVLIVDSDEEGPSNSTDCS 602

>SCN7A_HUMAN (Q01118) Sodium channel protein type 7 alpha subunit (Sodium|
           channel protein type VII alpha subunit) (Putative
           voltage-gated sodium channel alpha subunit Nax) (Sodium
           channel protein, cardiac and skeletal muscle
           alpha-subunit)
          Length = 1682

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +2

Query: 35  KRRQRKTAXGGGKDV*KHCRNSPCSTHILTTYENSHSFYRPSRPK 169
           K  Q K+  GG K+  K   +S CST  +   E    FY   R K
Sbjct: 851 KEIQSKSGDGGSKEKIKQSSSSECSTVDIAISEEEEMFYGGERSK 895

>KCY2_BORBU (O51759) Cytidylate kinase 2 (EC 2.7.4.14) (CK 2) (Cytidine|
           monophosphate kinase 2) (CMP kinase 2)
          Length = 180

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -2

Query: 331 NNQMEQMSLLNQLATVLRMSMWVSKWTPIKMILPRHKRCRSEKIL 197
           +N++  +S  N      R+++W+SK   +K+ L      R+E+I+
Sbjct: 65  DNRLSVLSRKNNTVLASRLAIWISKSADLKIYLYAKMEVRAERIM 109

>IE68_PRVKA (P24827) Immediate-early protein RSP40|
          Length = 364

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 335 EEQSNGADESAEPASDGAQDEHVGEQMDTDKD 240
           E++ +G DE  E   DG +D   GE+ D D+D
Sbjct: 309 EDEDDGEDEEDEEGEDGGEDGEDGEE-DEDED 339



 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 338 PEEQSNGADESAEPASDGAQDEHVGEQMDTDKDD 237
           PE+ S+G    ++   DG +DE   E  D D+DD
Sbjct: 281 PEDGSDGEGSGSDDGGDG-EDEDEDEDEDEDEDD 313

>YBF3_YEAST (P38190) Very hypothetical 13.2 kDa protein in PTC3-SAS3 intergenic|
           region
          Length = 124

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 202 SSQIDTSYAWEGSSLSVSICSPTCSS*APSLAGSADSSAPF 324
           SS + +SY    SS S  ICS + SS     + S+ SS  F
Sbjct: 55  SSSLSSSYVSSSSSFSSDICSSSMSSSRVKSSSSSSSSLAF 95

>FRE7_YEAST (Q12333) Ferric reductase transmembrane component 7 (EC 1.16.1.7)|
           (Ferric-chelate reductase 7)
          Length = 629

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
 Frame = +3

Query: 54  PLLEEAKTSRNTAETLHVLLISSQRMKTAIPFIALAGQKHNS----ATDHGHKIFSDRH- 218
           P L +A+      E +H    +S   ++ +P I        S    A  H ++IF   H 
Sbjct: 214 PFLRQAR-HEGGYERMHQRWKASDMWRSGVPPILFLNLLWLSSLPIARRHFYEIFLQLHW 272

Query: 219 LLCLGRIIFIGVH----LLTHMLILSTVASWFSRL 311
           +L +G  I +  H    L +HM +++T+  WF++L
Sbjct: 273 ILAVGFYISLFYHVYPELNSHMYLVATIVVWFAQL 307

>PVG3_SCHPO (Q9USX0) Beta-1,3-galactosyltransferase pvg3 (EC 2.4.1.134)|
           (Pyruvylated Gal-beta-1,3-epitope synthesis protein 3)
           (PvGal synthesis protein 3)
          Length = 378

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 234 RIIFIGVHLLTHMLILSTVASWFSRL 311
           RI  I VH L  + +LSTV++WF ++
Sbjct: 323 RIDAIAVHKLKSIPLLSTVSNWFKKM 348

>YNU6_YEAST (P40161) Hypothetical 51.6 kDa protein in SSB2-SPX18 intergenic|
           region
          Length = 455

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 335 EEQSNGADESAEPASDGAQDEHVGEQMDTDKDD 237
           E +S+ +D S + +SDGA+D    E+ D + D+
Sbjct: 361 EAESDLSDGSGQESSDGAEDGEEAEEDDEEDDE 393

>RPGR_MOUSE (Q9R0X5) X-linked retinitis pigmentosa GTPase regulator (mRpgr)|
          Length = 1001

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -1

Query: 350 EAYTPEEQSNGADESAEPA----SDGAQDEHVGEQMDTD 246
           EA++ EE  NG D+  EP       G Q   VG++ D +
Sbjct: 577 EAFSDEEVGNGLDQVEEPRVFTDGKGLQSRQVGKESDEE 615

>CWC22_CANAL (Q59XY0) Pre-mRNA-splicing factor CWC22|
          Length = 648

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 18  FCMHLPNVVKEKPLLEEAKTSRNTAETLHVLLISS-QRMKTAIPFIALAGQKHNSATDHG 194
           F   + N +K K    + KT+ N  E L  ++I    + KT   +  + G+K  S  DH 
Sbjct: 355 FKSKIKNKIKNKT---KTKTNSNDNEILADMVIKCCSQEKTYSKYYGIIGEKLISRNDHW 411

Query: 195 HKIF 206
           H +F
Sbjct: 412 HNLF 415

>YN86_YEAST (P27514) Hypothetical 99.5 kDa protein in URK1-SMM1 intergenic|
           region
          Length = 894

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 285 TVASWFSRLICSI*LFFWCIS 347
           T+  WF  L+C I +  WC+S
Sbjct: 683 TLKQWFVTLVCIITIVLWCLS 703

>SYFB_WOLTR (Q5GSH5) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 792

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 42  VKEKPLLEEAKTSRNTAETLHVLLIS 119
           +KE+PL++  +   NT + L VL+IS
Sbjct: 480 IKEEPLIDNVEVEINTHDNLRVLMIS 505

>FADB_SHEON (Q8EKR9) Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA|
           hydratase (EC 4.2.1.17);
           Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC
           5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35);
           3-hydroxybutyryl-CoA epimerase (EC 5.1.2.
          Length = 716

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +3

Query: 6   KPXLFC-MHLPNVVKEKPLLEEAKTSRNTAETL-HVLLISSQRMKTAI 143
           KP  FC MH  N V + PL+E  +   ++ ET+  V+  +S+  KT I
Sbjct: 442 KPERFCGMHFFNPVHKMPLVEVIRGEHSSEETIASVVAYASKMGKTPI 489

>TEX10_CHICK (Q5ZM41) Testis expressed sequence 10 protein homolog|
          Length = 927

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +3

Query: 9   PXLFCMHLPNVVKEKPLLEEAKTSRNTAETLHVL--LISSQRMKTAIPFIALAGQKHNSA 182
           P L   HL N++ E   +   K S      +H+L  L S  R +   PF  L     +SA
Sbjct: 89  PFLIDAHLSNIISEVAAVFTDKDSGVRGAAVHLLQFLASKIRAEQIAPFFPLVSAHLSSA 148

Query: 183 TDH 191
             H
Sbjct: 149 MTH 151

>Y3856_METAC (Q8TJD0) UPF0285 protein MA3856|
          Length = 325

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
 Frame = +3

Query: 141 IPFIALAGQKHNSATDHGHKIFSDR----------HLLCLGRIIFIGVHLLTHMLILSTV 290
           IP IA+ G    S  D   K+FS            H+LCLG   F+   + ++ + L+ V
Sbjct: 108 IPAIAIPGLHSGSRVDPRMKVFSHLTSPEKLGIAYHILCLGYEDFVVSDISSNTVTLAVV 167

Query: 291 A 293
           A
Sbjct: 168 A 168

>RFT1_YARLI (Q6C6S3) Oligosaccharide translocation protein RFT1|
          Length = 673

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
 Frame = +3

Query: 105 VLLISSQRMKTAIPFIALAGQK-----------HNSATDHGHKIFSDRHLLCLGRIIFIG 251
           VL  S + ++ A+  + LAG+K            ++ +     + +  ++  L  + F  
Sbjct: 150 VLFFSREAVRLALQRLTLAGKKPDVYVFGGGVVQDTVSGTSQAVINMGYISVLLGVFFSS 209

Query: 252 VHLLTHMLILSTVASWFSRLIC 317
           V   +H L     ASW  +L+C
Sbjct: 210 VAAASHSLFSVAYASWAVQLVC 231

>OGFR_MOUSE (Q99PG2) Opioid growth factor receptor (OGFr) (Zeta-type opioid|
           receptor)
          Length = 633

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -1

Query: 338 PEEQSNGADESAEPASDGAQDEHVGEQMDTDKDDPSQA 225
           PE  S   DES E   DG  D+   E    D  D  +A
Sbjct: 4   PECDSTWEDESEEDGEDGQADDTTDEDTGDDDGDAEEA 41

>Y2654_BACSK (Q5WEM1) UPF0176 protein ABC2654|
          Length = 322

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 86  HCRNSPCSTHILTTYENSHSFYRPSRPKAQ 175
           +C N  C+  IL + EN H + R   P+ +
Sbjct: 260 NCANPECNKQILCSEENEHKYLRGCTPECR 289

>ZCH10_MOUSE (Q9CX48) Zinc finger CCHC domain-containing protein 10|
          Length = 178

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 199 KSSQIDTSYAWEGSSLSVSICSPTCSS*APSLAGSADSSAPFDCSS 336
           + S  D S +   SS S S CS + SS + S +  +DSS+    SS
Sbjct: 114 EDSDSDESLSSSSSSSSSSACSSSSSSSSSSSSSDSDSSSSSSSSS 159


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,710,899
Number of Sequences: 219361
Number of extensions: 912505
Number of successful extensions: 2867
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2862
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)