ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags29g18 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Z68903.1|SCCPN60 S.cereale cv. Petkus "Halo" encoding cpn60 Length = 1707 Score = 860 bits (434), Expect = 0.0 Identities = 511/535 (95%), Gaps = 3/535 (0%) Strand = Plus / Minus Query: 83 atctctcaaaacttggttcatgctaccaaaaattaaaccacatcctctggagagactcca 142 ||||||||||||||||| ||||||||||||| ||||||||| || || ||||| |||| Sbjct: 1571 atctctcaaaacttggtccatgctaccaaaa-ttaaaccacgtcatccggagaaactcgg 1513 Query: 143 cc--gtcgctcatcagtatccgaagccggagttgtccatggggttgacgaggggcgcggg 200 || ||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1512 ccatgtcactcatcagtatccgaagccggagttgtccatggggttggcgaggggcgcggc 1453 Query: 201 ctcaggctccttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccga 260 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1452 ctcaggctccttgatctcgacgaccaccacgtcggacgtcaggaaggtcttggccaccga 1393 Query: 261 cgcggcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 320 ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1392 tgcggcgtgctccaggcaacatctcaccaccttggtggggtcgatgataccagcagccat 1333 Query: 321 caagtcctcgtactgcccagtggctgcgttgtagccgaacttgaagttgtcgttagaaag 380 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1332 caagtcctcgtactgcccagtggcagcgttgtagccgaacttgaagttgtcgttagaaag 1273 Query: 381 aaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaacttgagtgg 440 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1272 aaccttctcggtaacaacactgccattgacaccggcattcttggcgatcaacttgagtgg 1213 Query: 441 gtagcacagcgccctcctcactatctcagctccgaccttctgctcgtcgttctccagggt 500 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1212 gtagcacagtgccctcctcactatctcagctccgaccttctgctcgtcgttctccagggt 1153 Query: 501 gtccttgatggcatcaaccttagcagccagcctcaaaagagtgcaccctccaccaacaac 560 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1152 gtccttgatggcatcaaccttagcagccagcctcaaaagggtgcaccctccaccaacaac 1093 Query: 561 aataccttnctcaacggcagccttggttgcgtttagagcatnctcaactcgcaac 615 |||||||| |||||||||||||||||||||||||||||||| |||||||| |||| Sbjct: 1092 aataccttcctcaacggcagccttggttgcgtttagagcatcctcaactctcaac 1038 Score = 81.8 bits (41), Expect = 2e-12 Identities = 48/49 (97%), Gaps = 1/49 (2%) Strand = Plus / Minus Query: 1 gtttctctgcttatttcgccgttctggcaggcacatcacattgcatttt 49 |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1654 gtttctctgcttatttcgccgttctggc-ggcacatcacattgcatttt 1607
>ref|NM_185419.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2131 Score = 484 bits (244), Expect = e-133 Identities = 410/466 (87%) Strand = Plus / Minus Query: 150 tcatcagtatccgaagccggagttgtccatggggttgacgaggggcgcgggctcaggctc 209 ||||||||| ||| |||||||||||||||| |||||| || |||||| ||||||||||| Sbjct: 1898 tcatcagtacccgtagccggagttgtccatcgggttggtgacgggcgcaggctcaggctc 1839 Query: 210 cttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcatg 269 ||||||||||||||| || || ||||| || ||||| ||||||||||||||||| ||||| Sbjct: 1838 cttgatctcgacgacgacgacatccgatgtgaggaatgtcttggccaccgacgcagcatg 1779 Query: 270 ctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaagtcctc 329 ||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 1778 ctcaagacaacatctcaccaccttagtggggtcaatgataccagcagccatcaaatcctc 1719 Query: 330 gtactgcccagtggctgcgttgtagccgaacttgaagttgtcgttagaaagaaccttctc 389 |||||| ||||| || || ||||| || ||||||||||| |||||||| ||||||||||| Sbjct: 1718 gtactgtccagttgcagcattgtaaccaaacttgaagttatcgttagagagaaccttctc 1659 Query: 390 ggtaacaacactgccattgacaccagcattcttggcgatcaacttgagtgggtagcacag 449 ||||||||| || ||||| |||||||||||||| || ||||| || || ||||||| ||| Sbjct: 1658 ggtaacaacgcttccattaacaccagcattcttagcaatcaatttaagcgggtagctcag 1599 Query: 450 cgccctcctcactatctcagctccgaccttctgctcgtcgttctccagggtgtccttgat 509 ||| ||||| || || |||||||| ||||||||||| || ||||||||| |||||||||| Sbjct: 1598 cgctctccttacaatttcagctccaaccttctgctcatcattctccaggttgtccttgat 1539 Query: 510 ggcatcaaccttagcagccagcctcaaaagagtgcaccctccaccaacaacaataccttn 569 ||| ||||| |||| ||||| |||| |||||||||||||||||||||||||||||||| Sbjct: 1538 ggcgtcaactctagctgccagtctcagaagagtgcaccctccaccaacaacaataccttc 1479 Query: 570 ctcaacggcagccttggttgcgtttagagcatnctcaactcgcaac 615 |||||| ||||||||||| || ||||| |||| |||||||| |||| Sbjct: 1478 ctcaacagcagccttggtagcatttagggcatcctcaactctcaac 1433
>dbj|AK101334.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034I03, full insert sequence Length = 2131 Score = 484 bits (244), Expect = e-133 Identities = 410/466 (87%) Strand = Plus / Minus Query: 150 tcatcagtatccgaagccggagttgtccatggggttgacgaggggcgcgggctcaggctc 209 ||||||||| ||| |||||||||||||||| |||||| || |||||| ||||||||||| Sbjct: 1898 tcatcagtacccgtagccggagttgtccatcgggttggtgacgggcgcaggctcaggctc 1839 Query: 210 cttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcatg 269 ||||||||||||||| || || ||||| || ||||| ||||||||||||||||| ||||| Sbjct: 1838 cttgatctcgacgacgacgacatccgatgtgaggaatgtcttggccaccgacgcagcatg 1779 Query: 270 ctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaagtcctc 329 ||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 1778 ctcaagacaacatctcaccaccttagtggggtcaatgataccagcagccatcaaatcctc 1719 Query: 330 gtactgcccagtggctgcgttgtagccgaacttgaagttgtcgttagaaagaaccttctc 389 |||||| ||||| || || ||||| || ||||||||||| |||||||| ||||||||||| Sbjct: 1718 gtactgtccagttgcagcattgtaaccaaacttgaagttatcgttagagagaaccttctc 1659 Query: 390 ggtaacaacactgccattgacaccagcattcttggcgatcaacttgagtgggtagcacag 449 ||||||||| || ||||| |||||||||||||| || ||||| || || ||||||| ||| Sbjct: 1658 ggtaacaacgcttccattaacaccagcattcttagcaatcaatttaagcgggtagctcag 1599 Query: 450 cgccctcctcactatctcagctccgaccttctgctcgtcgttctccagggtgtccttgat 509 ||| ||||| || || |||||||| ||||||||||| || ||||||||| |||||||||| Sbjct: 1598 cgctctccttacaatttcagctccaaccttctgctcatcattctccaggttgtccttgat 1539 Query: 510 ggcatcaaccttagcagccagcctcaaaagagtgcaccctccaccaacaacaataccttn 569 ||| ||||| |||| ||||| |||| |||||||||||||||||||||||||||||||| Sbjct: 1538 ggcgtcaactctagctgccagtctcagaagagtgcaccctccaccaacaacaataccttc 1479 Query: 570 ctcaacggcagccttggttgcgtttagagcatnctcaactcgcaac 615 |||||| ||||||||||| || ||||| |||| |||||||| |||| Sbjct: 1478 ctcaacagcagccttggtagcatttagggcatcctcaactctcaac 1433
>dbj|AK062098.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-A02, full insert sequence Length = 1781 Score = 484 bits (244), Expect = e-133 Identities = 410/466 (87%) Strand = Plus / Minus Query: 150 tcatcagtatccgaagccggagttgtccatggggttgacgaggggcgcgggctcaggctc 209 ||||||||| ||| |||||||||||||||| |||||| || |||||| ||||||||||| Sbjct: 1566 tcatcagtacccgtagccggagttgtccatcgggttggtgacgggcgcaggctcaggctc 1507 Query: 210 cttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcatg 269 ||||||||||||||| || || ||||| || ||||| ||||||||||||||||| ||||| Sbjct: 1506 cttgatctcgacgacgacgacatccgatgtgaggaatgtcttggccaccgacgcagcatg 1447 Query: 270 ctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaagtcctc 329 ||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 1446 ctcaagacaacatctcaccaccttagtggggtcaatgataccagcagccatcaaatcctc 1387 Query: 330 gtactgcccagtggctgcgttgtagccgaacttgaagttgtcgttagaaagaaccttctc 389 |||||| ||||| || || ||||| || ||||||||||| |||||||| ||||||||||| Sbjct: 1386 gtactgtccagttgcagcattgtaaccaaacttgaagttatcgttagagagaaccttctc 1327 Query: 390 ggtaacaacactgccattgacaccagcattcttggcgatcaacttgagtgggtagcacag 449 ||||||||| || ||||| |||||||||||||| || ||||| || || ||||||| ||| Sbjct: 1326 ggtaacaacgcttccattaacaccagcattcttagcaatcaatttaagcgggtagctcag 1267 Query: 450 cgccctcctcactatctcagctccgaccttctgctcgtcgttctccagggtgtccttgat 509 ||| ||||| || || |||||||| ||||||||||| || ||||||||| |||||||||| Sbjct: 1266 cgctctccttacaatttcagctccaaccttctgctcatcattctccaggttgtccttgat 1207 Query: 510 ggcatcaaccttagcagccagcctcaaaagagtgcaccctccaccaacaacaataccttn 569 ||| ||||| |||| ||||| |||| |||||||||||||||||||||||||||||||| Sbjct: 1206 ggcgtcaactctagctgccagtctcagaagagtgcaccctccaccaacaacaataccttc 1147 Query: 570 ctcaacggcagccttggttgcgtttagagcatnctcaactcgcaac 615 |||||| ||||||||||| || ||||| |||| |||||||| |||| Sbjct: 1146 ctcaacagcagccttggtagcatttagggcatcctcaactctcaac 1101
>dbj|AK060117.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E09, full insert sequence Length = 1097 Score = 484 bits (244), Expect = e-133 Identities = 410/466 (87%) Strand = Plus / Minus Query: 150 tcatcagtatccgaagccggagttgtccatggggttgacgaggggcgcgggctcaggctc 209 ||||||||| ||| |||||||||||||||| |||||| || |||||| ||||||||||| Sbjct: 892 tcatcagtacccgtagccggagttgtccatcgggttggtgacgggcgcaggctcaggctc 833 Query: 210 cttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcatg 269 ||||||||||||||| || || ||||| || ||||| ||||||||||||||||| ||||| Sbjct: 832 cttgatctcgacgacgacgacatccgatgtgaggaatgtcttggccaccgacgcagcatg 773 Query: 270 ctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaagtcctc 329 ||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 772 ctcaagacaacatctcaccaccttagtggggtcaatgataccagcagccatcaaatcctc 713 Query: 330 gtactgcccagtggctgcgttgtagccgaacttgaagttgtcgttagaaagaaccttctc 389 |||||| ||||| || || ||||| || ||||||||||| |||||||| ||||||||||| Sbjct: 712 gtactgtccagttgcagcattgtaaccaaacttgaagttatcgttagagagaaccttctc 653 Query: 390 ggtaacaacactgccattgacaccagcattcttggcgatcaacttgagtgggtagcacag 449 ||||||||| || ||||| |||||||||||||| || ||||| || || ||||||| ||| Sbjct: 652 ggtaacaacgcttccattaacaccagcattcttagcaatcaatttaagcgggtagctcag 593 Query: 450 cgccctcctcactatctcagctccgaccttctgctcgtcgttctccagggtgtccttgat 509 ||| ||||| || || |||||||| ||||||||||| || ||||||||| |||||||||| Sbjct: 592 cgctctccttacaatttcagctccaaccttctgctcatcattctccaggttgtccttgat 533 Query: 510 ggcatcaaccttagcagccagcctcaaaagagtgcaccctccaccaacaacaataccttn 569 ||| ||||| |||| ||||| |||| |||||||||||||||||||||||||||||||| Sbjct: 532 ggcgtcaactctagctgccagtctcagaagagtgcaccctccaccaacaacaataccttc 473 Query: 570 ctcaacggcagccttggttgcgtttagagcatnctcaactcgcaac 615 |||||| ||||||||||| || ||||| |||| |||||||| |||| Sbjct: 472 ctcaacagcagccttggtagcatttagggcatcctcaactctcaac 427
>gb|AY675582.1| Zea mays RuBisCo subunit binding-protein beta subunit mRNA, partial cds Length = 1471 Score = 444 bits (224), Expect = e-121 Identities = 402/462 (87%) Strand = Plus / Minus Query: 149 ctcatcagtatccgaagccggagttgtccatggggttgacgaggggcgcgggctcaggct 208 ||||||||||||| |||| ||||||||||| ||||| ||| || | | ||| |||| Sbjct: 1235 ctcatcagtatccatagccagagttgtccatcgggtttgcgacaggtgtagcctccggct 1176 Query: 209 ccttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcat 268 ||||||| ||||||||||| || || || ||||||||||||||||||||||||||||| | Sbjct: 1175 ccttgatatcgacgaccacaacatctgatgtcaggaaggtcttggccaccgacgcggcgt 1116 Query: 269 gctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaagtcct 328 |||||| ||| |||||||||||||| |||||||| ||||||||||||||||||| ||||| Sbjct: 1115 gctccaagcagcatctcaccaccttggtggggtcaatgataccagcagccatcaggtcct 1056 Query: 329 cgtactgcccagtggctgcgttgtagccgaacttgaagttgtcgttagaaagaaccttct 388 ||||||| ||||| || || ||||| || |||||||||| || |||||||| ||||||| Sbjct: 1055 cgtactgtccagtagcagcattgtaaccatacttgaagttatcattagaaaggaccttct 996 Query: 389 cggtaacaacactgccattgacaccagcattcttggcgatcaacttgagtgggtagcaca 448 | || |||||||||||||||||||| || || || || ||||| || |||||||||| || Sbjct: 995 cagtgacaacactgccattgacaccggcgtttttagcaatcaatttaagtgggtagctca 936 Query: 449 gcgccctcctcactatctcagctccgaccttctgctcgtcgttctccagggtgtccttga 508 | |||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||| Sbjct: 935 gggccctcctcactatttcagctccaaccttctgctcgtcgttctccagtgtatccttga 876 Query: 509 tggcatcaaccttagcagccagcctcaaaagagtgcaccctccaccaacaacaatacctt 568 |||| || || ||||| || |||| |||||||||||||||||| |||||||||||||||| Sbjct: 875 tggcgtcgactttagctgcaagccgcaaaagagtgcaccctcccccaacaacaatacctt 816 Query: 569 nctcaacggcagccttggttgcgtttagagcatnctcaactc 610 ||||||||||||||||||||| ||||| |||| |||||||| Sbjct: 815 cctcaacggcagccttggttgcatttagggcatcctcaactc 774
>gb|AY103778.1| Zea mays PCO063180 mRNA sequence Length = 2338 Score = 424 bits (214), Expect = e-115 Identities = 395/456 (86%) Strand = Plus / Minus Query: 155 agtatccgaagccggagttgtccatggggttgacgaggggcgcgggctcaggctccttga 214 ||||||| |||| ||||||||||| ||||| | |||||||| | ||| |||||||| | Sbjct: 2034 agtatccatagccagagttgtccatcgggttagcaaggggcgcagactctggctccttaa 1975 Query: 215 tctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcatgctcca 274 | ||||||||||| || || || ||||||||||||||||||||||||||||||||||||| Sbjct: 1974 tatcgacgaccacaacatcagatgtcaggaaggtcttggccaccgacgcggcatgctcca 1915 Query: 275 ggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaagtcctcgtact 334 || ||||||||||||||||| || || ||||||||||||||||||||||||||||||| Sbjct: 1914 aacagcatctcaccaccttagtaggatcaatgataccagcagccatcaagtcctcgtact 1855 Query: 335 gcccagtggctgcgttgtagccgaacttgaagttgtcgttagaaagaaccttctcggtaa 394 | ||||| || || ||||| || |||||||||| ||||||||||| |||||||| || | Sbjct: 1854 gtccagtagcagcattgtaaccatacttgaagttatcgttagaaaggaccttctcagtga 1795 Query: 395 caacactgccattgacaccagcattcttggcgatcaacttgagtgggtagcacagcgccc 454 | || |||||||||||||| ||||| || || ||||| || |||||||||| ||| |||| Sbjct: 1794 cgacgctgccattgacaccggcatttttagcaatcaatttaagtgggtagctcagggccc 1735 Query: 455 tcctcactatctcagctccgaccttctgctcgtcgttctccagggtgtccttgatggcat 514 |||| ||||| |||||||| ||||||||||| ||||||||||| || ||||||||||||| Sbjct: 1734 tccttactatttcagctccaaccttctgctcatcgttctccagtgtatccttgatggcat 1675 Query: 515 caaccttagcagccagcctcaaaagagtgcaccctccaccaacaacaataccttnctcaa 574 | || ||||| || |||| |||||| ||||| |||||||||||||||||||||| ||||| Sbjct: 1674 cgactttagctgcaagccgcaaaagggtgcatcctccaccaacaacaataccttcctcaa 1615 Query: 575 cggcagccttggttgcgtttagagcatnctcaactc 610 | |||||||||||||| ||||| |||| |||||||| Sbjct: 1614 cagcagccttggttgcatttagggcatcctcaactc 1579
>ref|XM_463795.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2155 Score = 141 bits (71), Expect = 3e-30 Identities = 271/338 (80%) Strand = Plus / Minus Query: 253 gccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtcgatgatacca 312 ||||||||||| |||||||||| |||||||||||||||||| ||||| || || |||||| Sbjct: 1789 gccaccgacgcagcatgctccaagcaacatctcaccaccttggtgggatcaataatacca 1730 Query: 313 gcagccatcaagtcctcgtactgcccagtggctgcgttgtagccgaacttgaagttgtcg 372 ||||||||||| ||||| || | || || || || ||||| || || ||||||| || Sbjct: 1729 gcagccatcaaatcctcatattttcctgtagcggcattgtaaccatacctgaagttatca 1670 Query: 373 ttagaaagaaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaac 432 || | ||| |||||||| |||||||||||||| || ||||||||||| || || || || Sbjct: 1669 ttggcaaggaccttctcagtaacaacactgccgttaacaccagcattttttgctattaat 1610 Query: 433 ttgagtgggtagcacagcgccctcctcactatctcagctccgaccttctgctcgtcgttc 492 || |||||||| | || | | |||| || || ||||| || |||||||| || || ||| Sbjct: 1609 ttaagtgggtaactcaaggacttccttacgatttcagccccaaccttctgttcatcattc 1550 Query: 493 tccagggtgtccttgatggcatcaaccttagcagccagcctcaaaagagtgcaccctcca 552 || || || || | ||||||||||| || | || |||| |||||| || || || || Sbjct: 1549 tcaagtgtttctataatggcatcaacttttgatgcaagccgcaaaagcgtacagccacct 1490 Query: 553 ccaacaacaataccttnctcaacggcagccttggttgc 590 |||||||||||||||| |||||| || ||||||||||| Sbjct: 1489 ccaacaacaataccttcctcaacagccgccttggttgc 1452
>ref|XM_506674.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1435_F07.26 mRNA Length = 2310 Score = 141 bits (71), Expect = 3e-30 Identities = 271/338 (80%) Strand = Plus / Minus Query: 253 gccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtcgatgatacca 312 ||||||||||| |||||||||| |||||||||||||||||| ||||| || || |||||| Sbjct: 1809 gccaccgacgcagcatgctccaagcaacatctcaccaccttggtgggatcaataatacca 1750 Query: 313 gcagccatcaagtcctcgtactgcccagtggctgcgttgtagccgaacttgaagttgtcg 372 ||||||||||| ||||| || | || || || || ||||| || || ||||||| || Sbjct: 1749 gcagccatcaaatcctcatattttcctgtagcggcattgtaaccatacctgaagttatca 1690 Query: 373 ttagaaagaaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaac 432 || | ||| |||||||| |||||||||||||| || ||||||||||| || || || || Sbjct: 1689 ttggcaaggaccttctcagtaacaacactgccgttaacaccagcattttttgctattaat 1630 Query: 433 ttgagtgggtagcacagcgccctcctcactatctcagctccgaccttctgctcgtcgttc 492 || |||||||| | || | | |||| || || ||||| || |||||||| || || ||| Sbjct: 1629 ttaagtgggtaactcaaggacttccttacgatttcagccccaaccttctgttcatcattc 1570 Query: 493 tccagggtgtccttgatggcatcaaccttagcagccagcctcaaaagagtgcaccctcca 552 || || || || | ||||||||||| || | || |||| |||||| || || || || Sbjct: 1569 tcaagtgtttctataatggcatcaacttttgatgcaagccgcaaaagcgtacagccacct 1510 Query: 553 ccaacaacaataccttnctcaacggcagccttggttgc 590 |||||||||||||||| |||||| || ||||||||||| Sbjct: 1509 ccaacaacaataccttcctcaacagccgccttggttgc 1472
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 141 bits (71), Expect = 3e-30 Identities = 113/127 (88%) Strand = Plus / Plus Query: 166 ccggagttgtccatggggttgacgaggggcgcgggctcaggctccttgatctcgacgacc 225 |||||||||||||| |||||| || |||||| |||||||||||||||||||||||||| Sbjct: 810397 ccggagttgtccatcgggttggtgacgggcgcaggctcaggctccttgatctcgacgacg 810456 Query: 226 accacgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctc 285 || || ||||| || ||||| ||||||||||||||||| |||||||| || ||||||||| Sbjct: 810457 acgacatccgatgtgaggaatgtcttggccaccgacgcagcatgctcaagacaacatctc 810516 Query: 286 accacct 292 ||||||| Sbjct: 810517 accacct 810523 Score = 131 bits (66), Expect = 3e-27 Identities = 98/109 (89%) Strand = Plus / Plus Query: 475 accttctgctcgtcgttctccagggtgtccttgatggcatcaaccttagcagccagcctc 534 ||||||||||| || ||||||||| ||||||||||||| ||||| |||| ||||| ||| Sbjct: 811408 accttctgctcatcattctccaggttgtccttgatggcgtcaactctagctgccagtctc 811467 Query: 535 aaaagagtgcaccctccaccaacaacaataccttnctcaacggcagcct 583 | |||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct: 811468 agaagagtgcaccctccaccaacaacaataccttcctcaacagcagcct 811516 Score = 113 bits (57), Expect = 7e-22 Identities = 87/97 (89%) Strand = Plus / Plus Query: 289 accttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggctgcg 348 |||||||||||||| |||||||||||||||||||| ||||||||||| ||||| || || Sbjct: 810972 accttagtggggtcaatgataccagcagccatcaaatcctcgtactgtccagttgcagca 811031 Query: 349 ttgtagccgaacttgaagttgtcgttagaaagaacct 385 ||||| || ||||||||||| |||||||| ||||||| Sbjct: 811032 ttgtaaccaaacttgaagttatcgttagagagaacct 811068 Score = 83.8 bits (42), Expect = 6e-13 Identities = 84/98 (85%) Strand = Plus / Plus Query: 381 aaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaacttgagtgg 440 |||||||||||||||||| || ||||| |||||||||||||| || ||||| || || || Sbjct: 811141 aaccttctcggtaacaacgcttccattaacaccagcattcttagcaatcaatttaagcgg 811200 Query: 441 gtagcacagcgccctcctcactatctcagctccgacct 478 ||||| |||||| ||||| || || |||||||| |||| Sbjct: 811201 gtagctcagcgctctccttacaatttcagctccaacct 811238 Score = 40.1 bits (20), Expect = 8.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 291 cttagtggggtcgatgataccagcagccatcaagtcctcgtact 334 |||||||||||| || | |||||| |||| ||||||||||||| Sbjct: 806511 cttagtggggtcaatagtcccagcaaccattaagtcctcgtact 806554
>dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0541H01 Length = 157519 Score = 141 bits (71), Expect = 3e-30 Identities = 113/127 (88%) Strand = Plus / Plus Query: 166 ccggagttgtccatggggttgacgaggggcgcgggctcaggctccttgatctcgacgacc 225 |||||||||||||| |||||| || |||||| |||||||||||||||||||||||||| Sbjct: 93531 ccggagttgtccatcgggttggtgacgggcgcaggctcaggctccttgatctcgacgacg 93590 Query: 226 accacgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctc 285 || || ||||| || ||||| ||||||||||||||||| |||||||| || ||||||||| Sbjct: 93591 acgacatccgatgtgaggaatgtcttggccaccgacgcagcatgctcaagacaacatctc 93650 Query: 286 accacct 292 ||||||| Sbjct: 93651 accacct 93657 Score = 131 bits (66), Expect = 3e-27 Identities = 98/109 (89%) Strand = Plus / Plus Query: 475 accttctgctcgtcgttctccagggtgtccttgatggcatcaaccttagcagccagcctc 534 ||||||||||| || ||||||||| ||||||||||||| ||||| |||| ||||| ||| Sbjct: 94542 accttctgctcatcattctccaggttgtccttgatggcgtcaactctagctgccagtctc 94601 Query: 535 aaaagagtgcaccctccaccaacaacaataccttnctcaacggcagcct 583 | |||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct: 94602 agaagagtgcaccctccaccaacaacaataccttcctcaacagcagcct 94650 Score = 113 bits (57), Expect = 7e-22 Identities = 87/97 (89%) Strand = Plus / Plus Query: 289 accttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggctgcg 348 |||||||||||||| |||||||||||||||||||| ||||||||||| ||||| || || Sbjct: 94106 accttagtggggtcaatgataccagcagccatcaaatcctcgtactgtccagttgcagca 94165 Query: 349 ttgtagccgaacttgaagttgtcgttagaaagaacct 385 ||||| || ||||||||||| |||||||| ||||||| Sbjct: 94166 ttgtaaccaaacttgaagttatcgttagagagaacct 94202 Score = 83.8 bits (42), Expect = 6e-13 Identities = 84/98 (85%) Strand = Plus / Plus Query: 381 aaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaacttgagtgg 440 |||||||||||||||||| || ||||| |||||||||||||| || ||||| || || || Sbjct: 94275 aaccttctcggtaacaacgcttccattaacaccagcattcttagcaatcaatttaagcgg 94334 Query: 441 gtagcacagcgccctcctcactatctcagctccgacct 478 ||||| |||||| ||||| || || |||||||| |||| Sbjct: 94335 gtagctcagcgctctccttacaatttcagctccaacct 94372 Score = 40.1 bits (20), Expect = 8.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 291 cttagtggggtcgatgataccagcagccatcaagtcctcgtact 334 |||||||||||| || | |||||| |||| ||||||||||||| Sbjct: 89645 cttagtggggtcaatagtcccagcaaccattaagtcctcgtact 89688
>dbj|AK101537.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048E22, full insert sequence Length = 2154 Score = 141 bits (71), Expect = 3e-30 Identities = 271/338 (80%) Strand = Plus / Minus Query: 253 gccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtcgatgatacca 312 ||||||||||| |||||||||| |||||||||||||||||| ||||| || || |||||| Sbjct: 1788 gccaccgacgcagcatgctccaagcaacatctcaccaccttggtgggatcaataatacca 1729 Query: 313 gcagccatcaagtcctcgtactgcccagtggctgcgttgtagccgaacttgaagttgtcg 372 ||||||||||| ||||| || | || || || || ||||| || || ||||||| || Sbjct: 1728 gcagccatcaaatcctcatattttcctgtagcggcattgtaaccatacctgaagttatca 1669 Query: 373 ttagaaagaaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaac 432 || | ||| |||||||| |||||||||||||| || ||||||||||| || || || || Sbjct: 1668 ttggcaaggaccttctcagtaacaacactgccgttaacaccagcattttttgctattaat 1609 Query: 433 ttgagtgggtagcacagcgccctcctcactatctcagctccgaccttctgctcgtcgttc 492 || |||||||| | || | | |||| || || ||||| || |||||||| || || ||| Sbjct: 1608 ttaagtgggtaactcaaggacttccttacgatttcagccccaaccttctgttcatcattc 1549 Query: 493 tccagggtgtccttgatggcatcaaccttagcagccagcctcaaaagagtgcaccctcca 552 || || || || | ||||||||||| || | || |||| |||||| || || || || Sbjct: 1548 tcaagtgtttctataatggcatcaacttttgatgcaagccgcaaaagcgtacagccacct 1489 Query: 553 ccaacaacaataccttnctcaacggcagccttggttgc 590 |||||||||||||||| |||||| || ||||||||||| Sbjct: 1488 ccaacaacaataccttcctcaacagccgccttggttgc 1451
>dbj|AK070603.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023059D06, full insert sequence Length = 2310 Score = 141 bits (71), Expect = 3e-30 Identities = 271/338 (80%) Strand = Plus / Minus Query: 253 gccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtcgatgatacca 312 ||||||||||| |||||||||| |||||||||||||||||| ||||| || || |||||| Sbjct: 1809 gccaccgacgcagcatgctccaagcaacatctcaccaccttggtgggatcaataatacca 1750 Query: 313 gcagccatcaagtcctcgtactgcccagtggctgcgttgtagccgaacttgaagttgtcg 372 ||||||||||| ||||| || | || || || || ||||| || || ||||||| || Sbjct: 1749 gcagccatcaaatcctcatattttcctgtagcggcattgtaaccatacctgaagttatca 1690 Query: 373 ttagaaagaaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaac 432 || | ||| |||||||| |||||||||||||| || ||||||||||| || || || || Sbjct: 1689 ttggcaaggaccttctcagtaacaacactgccgttaacaccagcattttttgctattaat 1630 Query: 433 ttgagtgggtagcacagcgccctcctcactatctcagctccgaccttctgctcgtcgttc 492 || |||||||| | || | | |||| || || ||||| || |||||||| || || ||| Sbjct: 1629 ttaagtgggtaactcaaggacttccttacgatttcagccccaaccttctgttcatcattc 1570 Query: 493 tccagggtgtccttgatggcatcaaccttagcagccagcctcaaaagagtgcaccctcca 552 || || || || | ||||||||||| || | || |||| |||||| || || || || Sbjct: 1569 tcaagtgtttctataatggcatcaacttttgatgcaagccgcaaaagcgtacagccacct 1510 Query: 553 ccaacaacaataccttnctcaacggcagccttggttgc 590 |||||||||||||||| |||||| || ||||||||||| Sbjct: 1509 ccaacaacaataccttcctcaacagccgccttggttgc 1472
>ref|NM_179480.1| Arabidopsis thaliana CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding AT1G55490 (CPN60B) transcript variant AT1G55490.2 mRNA, complete cds Length = 2060 Score = 135 bits (68), Expect = 2e-28 Identities = 212/260 (81%) Strand = Plus / Minus Query: 169 gagttgtccatggggttgacgaggggcgcgggctcaggctccttgatctcgacgaccacc 228 ||||||||||| |||||| ||| ||| | || ||||| ||||||||||| || || || Sbjct: 1890 gagttgtccattgggttgccgacgggaactggttcaggttccttgatctcaacaacaacg 1831 Query: 229 acgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctcacc 288 ||||||| ||| ||| ||||| || ||||| || || || |||| |||||||||||| Sbjct: 1830 cagtccgacatcaagaaagtctttgcaaccgaagctgcgtgttccaagcaacatctcaca 1771 Query: 289 accttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggctgcg 348 ||||| || || |||||||| || ||||||||||| |||||||||| || || || || Sbjct: 1770 acctttgttggatcgatgattcctgcagccatcaaatcctcgtacttgccggttgcagca 1711 Query: 349 ttgtagccgaacttgaagttgtcgttagaaagaaccttctcggtaacaacactgccattg 408 ||||| ||||| || | ||| ||||| ||||| ||||||||| |||| ||||| ||||| Sbjct: 1710 ttgtaaccgaatttcacgttatcgttggaaagcaccttctcgctaactacacttccatta 1651 Query: 409 acaccagcattcttggcgat 428 |||||||||||||||||||| Sbjct: 1650 acaccagcattcttggcgat 1631 Score = 63.9 bits (32), Expect = 6e-07 Identities = 66/78 (84%) Strand = Plus / Minus Query: 538 agagtgcaccctccaccaacaacaataccttnctcaacggcagccttggttgcgtttaga 597 |||||||| || ||||||||||||||||||| ||| || || ||||| ||||| || ||| Sbjct: 1521 agagtgcaaccaccaccaacaacaataccttcctcgacagcggcctttgttgcattaaga 1462 Query: 598 gcatnctcaactcgcaac 615 |||| ||||||| |||| Sbjct: 1461 gcatcttcaactctcaac 1444
>ref|NM_104424.2| Arabidopsis thaliana CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding AT1G55490 (CPN60B) transcript variant AT1G55490.1 mRNA, complete cds Length = 2087 Score = 135 bits (68), Expect = 2e-28 Identities = 212/260 (81%) Strand = Plus / Minus Query: 169 gagttgtccatggggttgacgaggggcgcgggctcaggctccttgatctcgacgaccacc 228 ||||||||||| |||||| ||| ||| | || ||||| ||||||||||| || || || Sbjct: 1917 gagttgtccattgggttgccgacgggaactggttcaggttccttgatctcaacaacaacg 1858 Query: 229 acgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctcacc 288 ||||||| ||| ||| ||||| || ||||| || || || |||| |||||||||||| Sbjct: 1857 cagtccgacatcaagaaagtctttgcaaccgaagctgcgtgttccaagcaacatctcaca 1798 Query: 289 accttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggctgcg 348 ||||| || || |||||||| || ||||||||||| |||||||||| || || || || Sbjct: 1797 acctttgttggatcgatgattcctgcagccatcaaatcctcgtacttgccggttgcagca 1738 Query: 349 ttgtagccgaacttgaagttgtcgttagaaagaaccttctcggtaacaacactgccattg 408 ||||| ||||| || | ||| ||||| ||||| ||||||||| |||| ||||| ||||| Sbjct: 1737 ttgtaaccgaatttcacgttatcgttggaaagcaccttctcgctaactacacttccatta 1678 Query: 409 acaccagcattcttggcgat 428 |||||||||||||||||||| Sbjct: 1677 acaccagcattcttggcgat 1658 Score = 63.9 bits (32), Expect = 6e-07 Identities = 66/78 (84%) Strand = Plus / Minus Query: 538 agagtgcaccctccaccaacaacaataccttnctcaacggcagccttggttgcgtttaga 597 |||||||| || ||||||||||||||||||| ||| || || ||||| ||||| || ||| Sbjct: 1548 agagtgcaaccaccaccaacaacaataccttcctcgacagcggcctttgttgcattaaga 1489 Query: 598 gcatnctcaactcgcaac 615 |||| ||||||| |||| Sbjct: 1488 gcatcttcaactctcaac 1471
>gb|BT018779.1| Zea mays clone EL01N0526C09.d mRNA sequence Length = 2155 Score = 135 bits (68), Expect = 2e-28 Identities = 291/366 (79%) Strand = Plus / Minus Query: 243 gaaggtcttggccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtc 302 |||||| || |||||||| || |||||||||| ||| || ||||| ||||| ||||| || Sbjct: 1792 gaaggttttcgccaccgatgcagcatgctccaagcagcacctcacaaccttggtgggatc 1733 Query: 303 gatgataccagcagccatcaagtcctcgtactgcccagtggctgcgttgtagccgaactt 362 |||||||||||||||||||||||||| |||| ||| || || || ||||| || || | Sbjct: 1732 aatgataccagcagccatcaagtcctcatactcccctgtagccgcattgtacccatacct 1673 Query: 363 gaagttgtcgttagaaagaaccttctcggtaacaacactgccattgacaccagcattctt 422 |||||| || || | |||||||||||| ||||| ||||||||||| || || ||||| || Sbjct: 1672 gaagttctcattggcaagaaccttctcagtaaccacactgccattaacgcctgcattttt 1613 Query: 423 ggcgatcaacttgagtgggtagcacagcgccctcctcactatctcagctccgaccttctg 482 || ||||| || ||||| |||| || | | |||| || || ||||| || |||||||| Sbjct: 1612 tgcaatcaatttaagtggatagctcaaggacttccttacaatttcagccccaaccttctg 1553 Query: 483 ctcgtcgttctccagggtgtccttgatggcatcaaccttagcagccagcctcaaaagagt 542 || |||||||| ||||| || | || |||||||| || | || ||||||||||| || Sbjct: 1552 ttcatcgttctcaagggtctctataattgcatcaacttttgatgcaagcctcaaaagggt 1493 Query: 543 gcaccctccaccaacaacaataccttnctcaacggcagccttggttgcgtttagagcatn 602 || || ||||| ||||| ||||||| ||| || || ||||| || || || || |||| Sbjct: 1492 acagccaccacctacaacgataccttcctcgactgctgcctttgtagcattcagggcatc 1433 Query: 603 ctcaac 608 |||||| Sbjct: 1432 ctcaac 1427
>gb|BT018139.1| Zea mays clone EL01N0554H01.c mRNA sequence Length = 975 Score = 135 bits (68), Expect = 2e-28 Identities = 291/366 (79%) Strand = Plus / Minus Query: 243 gaaggtcttggccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtc 302 |||||| || |||||||| || |||||||||| ||| || ||||| ||||| ||||| || Sbjct: 587 gaaggttttcgccaccgatgcagcatgctccaagcagcacctcacaaccttggtgggatc 528 Query: 303 gatgataccagcagccatcaagtcctcgtactgcccagtggctgcgttgtagccgaactt 362 |||||||||||||||||||||||||| |||| ||| || || || ||||| || || | Sbjct: 527 aatgataccagcagccatcaagtcctcatactcccctgtagccgcattgtacccatacct 468 Query: 363 gaagttgtcgttagaaagaaccttctcggtaacaacactgccattgacaccagcattctt 422 |||||| || || | |||||||||||| ||||| ||||||||||| || || ||||| || Sbjct: 467 gaagttctcattggcaagaaccttctcagtaaccacactgccattaacgcctgcattttt 408 Query: 423 ggcgatcaacttgagtgggtagcacagcgccctcctcactatctcagctccgaccttctg 482 || ||||| || ||||| |||| || | | |||| || || ||||| || |||||||| Sbjct: 407 tgcaatcaatttaagtggatagctcaaggacttccttacaatttcagccccaaccttctg 348 Query: 483 ctcgtcgttctccagggtgtccttgatggcatcaaccttagcagccagcctcaaaagagt 542 || |||||||| ||||| || | || |||||||| || | || ||||||||||| || Sbjct: 347 ttcatcgttctcaagggtctctataattgcatcaacttttgatgcaagcctcaaaagggt 288 Query: 543 gcaccctccaccaacaacaataccttnctcaacggcagccttggttgcgtttagagcatn 602 || || ||||| ||||| ||||||| ||| || || ||||| || || || || |||| Sbjct: 287 acagccaccacctacaacgataccttcctcgactgctgcctttgtagcattcagggcatc 228 Query: 603 ctcaac 608 |||||| Sbjct: 227 ctcaac 222
>gb|AY081501.1| Arabidopsis thaliana Rubisco subunit binding-protein beta subunit (At1g55490) mRNA, complete cds Length = 1844 Score = 135 bits (68), Expect = 2e-28 Identities = 212/260 (81%) Strand = Plus / Minus Query: 169 gagttgtccatggggttgacgaggggcgcgggctcaggctccttgatctcgacgaccacc 228 ||||||||||| |||||| ||| ||| | || ||||| ||||||||||| || || || Sbjct: 1787 gagttgtccattgggttgccgacgggaactggttcaggttccttgatctcaacaacaacg 1728 Query: 229 acgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctcacc 288 ||||||| ||| ||| ||||| || ||||| || || || |||| |||||||||||| Sbjct: 1727 cagtccgacatcaagaaagtctttgcaaccgaagctgcgtgttccaagcaacatctcaca 1668 Query: 289 accttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggctgcg 348 ||||| || || |||||||| || ||||||||||| |||||||||| || || || || Sbjct: 1667 acctttgttggatcgatgattcctgcagccatcaaatcctcgtacttgccggttgcagca 1608 Query: 349 ttgtagccgaacttgaagttgtcgttagaaagaaccttctcggtaacaacactgccattg 408 ||||| ||||| || | ||| ||||| ||||| ||||||||| |||| ||||| ||||| Sbjct: 1607 ttgtaaccgaatttcacgttatcgttggaaagcaccttctcgctaactacacttccatta 1548 Query: 409 acaccagcattcttggcgat 428 |||||||||||||||||||| Sbjct: 1547 acaccagcattcttggcgat 1528 Score = 63.9 bits (32), Expect = 6e-07 Identities = 66/78 (84%) Strand = Plus / Minus Query: 538 agagtgcaccctccaccaacaacaataccttnctcaacggcagccttggttgcgtttaga 597 |||||||| || ||||||||||||||||||| ||| || || ||||| ||||| || ||| Sbjct: 1418 agagtgcaaccaccaccaacaacaataccttcctcgacagcggcctttgttgcattaaga 1359 Query: 598 gcatnctcaactcgcaac 615 |||| ||||||| |||| Sbjct: 1358 gcatcttcaactctcaac 1341
>gb|AF386945.1|AF386945 Arabidopsis thaliana Rubisco subunit binding-protein beta subunit (T5A14.11) mRNA, complete cds Length = 2060 Score = 135 bits (68), Expect = 2e-28 Identities = 212/260 (81%) Strand = Plus / Minus Query: 169 gagttgtccatggggttgacgaggggcgcgggctcaggctccttgatctcgacgaccacc 228 ||||||||||| |||||| ||| ||| | || ||||| ||||||||||| || || || Sbjct: 1909 gagttgtccattgggttgccgacgggaactggttcaggttccttgatctcaacaacaacg 1850 Query: 229 acgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctcacc 288 ||||||| ||| ||| ||||| || ||||| || || || |||| |||||||||||| Sbjct: 1849 cagtccgacatcaagaaagtctttgcaaccgaagctgcgtgttccaagcaacatctcaca 1790 Query: 289 accttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggctgcg 348 ||||| || || |||||||| || ||||||||||| |||||||||| || || || || Sbjct: 1789 acctttgttggatcgatgattcctgcagccatcaaatcctcgtacttgccggttgcagca 1730 Query: 349 ttgtagccgaacttgaagttgtcgttagaaagaaccttctcggtaacaacactgccattg 408 ||||| ||||| || | ||| ||||| ||||| ||||||||| |||| ||||| ||||| Sbjct: 1729 ttgtaaccgaatttcacgttatcgttggaaagcaccttctcgctaactacacttccatta 1670 Query: 409 acaccagcattcttggcgat 428 |||||||||||||||||||| Sbjct: 1669 acaccagcattcttggcgat 1650 Score = 63.9 bits (32), Expect = 6e-07 Identities = 66/78 (84%) Strand = Plus / Minus Query: 538 agagtgcaccctccaccaacaacaataccttnctcaacggcagccttggttgcgtttaga 597 |||||||| || ||||||||||||||||||| ||| || || ||||| ||||| || ||| Sbjct: 1540 agagtgcaaccaccaccaacaacaataccttcctcgacagcggcctttgttgcattaaga 1481 Query: 598 gcatnctcaactcgcaac 615 |||| ||||||| |||| Sbjct: 1480 gcatcttcaactctcaac 1463
>gb|AY104969.1| Zea mays PCO070942 mRNA sequence Length = 2290 Score = 135 bits (68), Expect = 2e-28 Identities = 291/366 (79%) Strand = Plus / Minus Query: 243 gaaggtcttggccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtc 302 |||||| || |||||||| || |||||||||| ||| || ||||| ||||| ||||| || Sbjct: 1920 gaaggttttcgccaccgatgcagcatgctccaagcagcacctcacaaccttggtgggatc 1861 Query: 303 gatgataccagcagccatcaagtcctcgtactgcccagtggctgcgttgtagccgaactt 362 |||||||||||||||||||||||||| |||| ||| || || || ||||| || || | Sbjct: 1860 aatgataccagcagccatcaagtcctcatactcccctgtagccgcattgtacccatacct 1801 Query: 363 gaagttgtcgttagaaagaaccttctcggtaacaacactgccattgacaccagcattctt 422 |||||| || || | |||||||||||| ||||| ||||||||||| || || ||||| || Sbjct: 1800 gaagttctcattggcaagaaccttctcagtaaccacactgccattaacgcctgcattttt 1741 Query: 423 ggcgatcaacttgagtgggtagcacagcgccctcctcactatctcagctccgaccttctg 482 || ||||| || ||||| |||| || | | |||| || || ||||| || |||||||| Sbjct: 1740 tgcaatcaatttaagtggatagctcaaggacttccttacaatttcagccccaaccttctg 1681 Query: 483 ctcgtcgttctccagggtgtccttgatggcatcaaccttagcagccagcctcaaaagagt 542 || |||||||| ||||| || | || |||||||| || | || ||||||||||| || Sbjct: 1680 ttcatcgttctcaagggtctctataattgcatcaacttttgatgcaagcctcaaaagggt 1621 Query: 543 gcaccctccaccaacaacaataccttnctcaacggcagccttggttgcgtttagagcatn 602 || || ||||| ||||| ||||||| ||| || || ||||| || || || || |||| Sbjct: 1620 acagccaccacctacaacgataccttcctcgactgctgcctttgtagcattcagggcatc 1561 Query: 603 ctcaac 608 |||||| Sbjct: 1560 ctcaac 1555
>emb|BX814891.1|CNS0ADZ4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS16ZG05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2000 Score = 127 bits (64), Expect = 5e-26 Identities = 212/260 (81%), Gaps = 1/260 (0%) Strand = Plus / Minus Query: 169 gagttgtccatggggttgacgaggggcgcgggctcaggctccttgatctcgacgaccacc 228 ||||||||||| |||||| ||| ||| | || ||||| ||||||||||| || || || Sbjct: 1871 gagttgtccattgggttgccgacgggaactggttcaggttccttgatctcaacaacaacg 1812 Query: 229 acgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctcacc 288 ||||||| ||| ||| ||||| || ||||| || || || |||| |||||||||||| Sbjct: 1811 cagtccgacatcaagaaagtctttgcaaccgaagctgcgtgttccaagcaacatctcaca 1752 Query: 289 accttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggctgcg 348 ||||| || || |||||||| || ||||||||||| |||||||||| || || || || Sbjct: 1751 acctttgttggatcgatgattcctgcagccatcaa-tcctcgtacttgccggttgcagca 1693 Query: 349 ttgtagccgaacttgaagttgtcgttagaaagaaccttctcggtaacaacactgccattg 408 ||||| ||||| || | ||| ||||| ||||| ||||||||| |||| ||||| ||||| Sbjct: 1692 ttgtaaccgaatttcacgttatcgttggaaagcaccttctcgctaactacacttccatta 1633 Query: 409 acaccagcattcttggcgat 428 |||||||||||||||||||| Sbjct: 1632 acaccagcattcttggcgat 1613 Score = 63.9 bits (32), Expect = 6e-07 Identities = 66/78 (84%) Strand = Plus / Minus Query: 538 agagtgcaccctccaccaacaacaataccttnctcaacggcagccttggttgcgtttaga 597 |||||||| || ||||||||||||||||||| ||| || || ||||| ||||| || ||| Sbjct: 1503 agagtgcaaccaccaccaacaacaataccttcctcgacagcggcctttgttgcattaaga 1444 Query: 598 gcatnctcaactcgcaac 615 |||| ||||||| |||| Sbjct: 1443 gcatcttcaactctcaac 1426
>gb|M35600.1|BNA60CPNB B.napus plastid 60-kDa chaperonin-60 beta-polypeptide (cpn-60 beta) mRNA, partial cds Length = 1982 Score = 127 bits (64), Expect = 5e-26 Identities = 190/232 (81%) Strand = Plus / Minus Query: 199 ggctcaggctccttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccacc 258 |||||||||||||||||||| || ||||| ||| ||| ||| ||| ||||| || ||| Sbjct: 1820 ggctcaggctccttgatctcaacaaccacacagtcagacatcaagaatgtctttgcaacc 1761 Query: 259 gacgcggcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagcc 318 || || ||||| |||| |||||||||||| |||||||| || |||||||| || |||||| Sbjct: 1760 gaagctgcatgttccaagcaacatctcacaaccttagttggatcgatgattcctgcagcc 1701 Query: 319 atcaagtcctcgtactgcccagtggctgcgttgtagccgaacttgaagttgtcgttagaa 378 || | |||||||||| || || || || ||||| |||||||| | || ||||||||| Sbjct: 1700 attagatcctcgtacttgccggttgcagcattgtaaccgaacttcacattatcgttagaa 1641 Query: 379 agaaccttctcggtaacaacactgccattgacaccagcattcttggcgatca 430 || ||||||||| |||| || || |||||||| || ||||||||||| |||| Sbjct: 1640 agcaccttctcgctaactacgcttccattgactcctgcattcttggcaatca 1589
>ref|NM_112193.1| Arabidopsis thaliana ATP binding / protein binding AT3G13470 mRNA, complete cds Length = 1922 Score = 97.6 bits (49), Expect = 4e-17 Identities = 267/340 (78%) Strand = Plus / Minus Query: 262 gcggcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatc 321 |||||||| || | |||||||||||| ||||| || ||||||||||| || ||||||||| Sbjct: 1682 gcggcatgttctaagcaacatctcacaacctttgtcgggtcgatgatgcctgcagccatc 1623 Query: 322 aagtcctcgtactgcccagtggctgcgttgtagccgaacttgaagttgtcgttagaaaga 381 | ||| || |||| || || || || ||||| || || || | || ||||||| || Sbjct: 1622 aggtcttcatacttgccggttgcagcattgtatccaaatttcacattatcgttagccagc 1563 Query: 382 accttctcggtaacaacactgccattgacaccagcattcttggcgatcaacttgagtggg 441 ||||||||| | |||||||| ||||| |||||||||||||| || ||||| || || ||| Sbjct: 1562 accttctcgctgacaacacttccattaacaccagcattcttagctatcaatttcagaggg 1503 Query: 442 tagcacagcgccctcctcactatctcagctccgaccttctgctcgtcgttctccagggtg 501 || | ||| || || | || || || ||||| ||||| | || || || || ||||| Sbjct: 1502 taactcagtgctcttttaacaatttccgctccaaccttttcttcatcattttcaagggta 1443 Query: 502 tccttgatggcatcaaccttagcagccagcctcaaaagagtgcaccctccaccaacaaca 561 |||||||||||||| ||||| | || |||| | |||||||| || |||||||| ||| Sbjct: 1442 tccttgatggcatcgacctttgatgcaagccggagcagagtgcaaccaccaccaacgaca 1383 Query: 562 ataccttnctcaacggcagccttggttgcgtttagagcat 601 ||||||| |||||| |||||||| || || || ||||||| Sbjct: 1382 ataccttcctcaacagcagcctttgtagcattaagagcat 1343
>ref|NM_125033.3| Arabidopsis thaliana ATP binding / protein binding AT5G56500 transcript variant AT5G56500.1 mRNA, complete cds Length = 2315 Score = 87.7 bits (44), Expect = 4e-14 Identities = 65/72 (90%) Strand = Plus / Minus Query: 374 tagaaagaaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaact 433 |||||||||||||||| | ||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 1661 tagaaagaaccttctcactgacaacgctgccattgacaccagcgttcttggcgattaact 1602 Query: 434 tgagtgggtagc 445 | |||||||||| Sbjct: 1601 tcagtgggtagc 1590 Score = 46.1 bits (23), Expect = 0.14 Identities = 60/73 (82%) Strand = Plus / Minus Query: 538 agagtgcaccctccaccaacaacaataccttnctcaacggcagccttggttgcgtttaga 597 ||||| || ||||| |||||||||||||||| || || |||||||| || || || ||| Sbjct: 1497 agagtacatcctccgccaacaacaataccttcttccacagcagcctttgtagcattaaga 1438 Query: 598 gcatnctcaactc 610 |||| ||||||| Sbjct: 1437 gcatcttcaactc 1425 Score = 40.1 bits (20), Expect = 8.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 265 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 320 |||||||| |||||||||||||| || || || || || ||||| || |||||||| Sbjct: 1770 gcatgctctaggcaacatctcacaactttggttggatcaatgattcctgcagccat 1715
>ref|NM_001037006.1| Arabidopsis thaliana ATP binding / protein binding AT5G56500 transcript variant AT5G56500.2 mRNA, complete cds Length = 2355 Score = 87.7 bits (44), Expect = 4e-14 Identities = 65/72 (90%) Strand = Plus / Minus Query: 374 tagaaagaaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaact 433 |||||||||||||||| | ||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 1701 tagaaagaaccttctcactgacaacgctgccattgacaccagcgttcttggcgattaact 1642 Query: 434 tgagtgggtagc 445 | |||||||||| Sbjct: 1641 tcagtgggtagc 1630 Score = 46.1 bits (23), Expect = 0.14 Identities = 60/73 (82%) Strand = Plus / Minus Query: 538 agagtgcaccctccaccaacaacaataccttnctcaacggcagccttggttgcgtttaga 597 ||||| || ||||| |||||||||||||||| || || |||||||| || || || ||| Sbjct: 1537 agagtacatcctccgccaacaacaataccttcttccacagcagcctttgtagcattaaga 1478 Query: 598 gcatnctcaactc 610 |||| ||||||| Sbjct: 1477 gcatcttcaactc 1465 Score = 40.1 bits (20), Expect = 8.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 265 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 320 |||||||| |||||||||||||| || || || || || ||||| || |||||||| Sbjct: 1810 gcatgctctaggcaacatctcacaactttggttggatcaatgattcctgcagccat 1755
>dbj|AK220921.1| Arabidopsis thaliana mRNA for RuBisCO subunit binding-protein beta subunit precursor, partial cds, clone: RAFL22-49-H21 Length = 766 Score = 87.7 bits (44), Expect = 4e-14 Identities = 65/72 (90%) Strand = Plus / Minus Query: 374 tagaaagaaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaact 433 |||||||||||||||| | ||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 299 tagaaagaaccttctcactgacaacgctgccattgacaccagcgttcttggcgattaact 240 Query: 434 tgagtgggtagc 445 | |||||||||| Sbjct: 239 tcagtgggtagc 228 Score = 46.1 bits (23), Expect = 0.14 Identities = 60/73 (82%) Strand = Plus / Minus Query: 538 agagtgcaccctccaccaacaacaataccttnctcaacggcagccttggttgcgtttaga 597 ||||| || ||||| |||||||||||||||| || || |||||||| || || || ||| Sbjct: 135 agagtacatcctccgccaacaacaataccttcttccacagcagcctttgtagcattaaga 76 Query: 598 gcatnctcaactc 610 |||| ||||||| Sbjct: 75 gcatcttcaactc 63 Score = 40.1 bits (20), Expect = 8.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 265 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 320 |||||||| |||||||||||||| || || || || || ||||| || |||||||| Sbjct: 408 gcatgctctaggcaacatctcacaactttggttggatcaatgattcctgcagccat 353
>emb|BX832336.1|CNS09ZVE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH66ZD09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 916 Score = 87.7 bits (44), Expect = 4e-14 Identities = 65/72 (90%) Strand = Plus / Minus Query: 374 tagaaagaaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaact 433 |||||||||||||||| | ||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 522 tagaaagaaccttctcactgacaacgctgccattgacaccagcgttcttggcgattaact 463 Query: 434 tgagtgggtagc 445 | |||||||||| Sbjct: 462 tcagtgggtagc 451 Score = 46.1 bits (23), Expect = 0.14 Identities = 60/73 (82%) Strand = Plus / Minus Query: 538 agagtgcaccctccaccaacaacaataccttnctcaacggcagccttggttgcgtttaga 597 ||||| || ||||| |||||||||||||||| || || |||||||| || || || ||| Sbjct: 358 agagtacatcctccgccaacaacaataccttcttccacagcagcctttgtagcattaaga 299 Query: 598 gcatnctcaactc 610 |||| ||||||| Sbjct: 298 gcatcttcaactc 286 Score = 40.1 bits (20), Expect = 8.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 265 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 320 |||||||| |||||||||||||| || || || || || ||||| || |||||||| Sbjct: 631 gcatgctctaggcaacatctcacaactttggttggatcaatgattcctgcagccat 576
>emb|BX831822.1|CNS09YNB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH31ZC11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1462 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 375 agaaagaaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaactt 434 ||||||||||||||| | ||||| |||||||| |||||||| ||||||||||| ||||| Sbjct: 1054 agaaagaaccttctcactgacaacgctgccatttacaccagcgttcttggcgattaactt 995 Query: 435 gagtgggtagc 445 |||||||||| Sbjct: 994 cagtgggtagc 984 Score = 46.1 bits (23), Expect = 0.14 Identities = 60/73 (82%) Strand = Plus / Minus Query: 538 agagtgcaccctccaccaacaacaataccttnctcaacggcagccttggttgcgtttaga 597 ||||| || ||||| |||||||||||||||| || || |||||||| || || || ||| Sbjct: 891 agagtacatcctccgccaacaacaataccttcttccacagcagcctttgtagcattaaga 832 Query: 598 gcatnctcaactc 610 |||| ||||||| Sbjct: 831 gcatcttcaactc 819 Score = 40.1 bits (20), Expect = 8.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 265 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 320 |||||||| |||||||||||||| || || || || || ||||| || |||||||| Sbjct: 1164 gcatgctctaggcaacatctcacaactttggttggatcaatgattcctgcagccat 1109
>dbj|AK118623.2| Arabidopsis thaliana At3g13470 mRNA for putative chaperonin 60 beta, complete cds, clone: RAFL19-88-M03 Length = 471 Score = 75.8 bits (38), Expect = 2e-10 Identities = 137/170 (80%) Strand = Plus / Minus Query: 262 gcggcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatc 321 |||||||| || | |||||||||||| ||||| || ||||||||||| || ||||||||| Sbjct: 185 gcggcatgttctaagcaacatctcacaacctttgtcgggtcgatgatgcctgcagccatc 126 Query: 322 aagtcctcgtactgcccagtggctgcgttgtagccgaacttgaagttgtcgttagaaaga 381 | ||| || |||| || || || || ||||| || || || | || ||||||| || Sbjct: 125 aggtcttcatacttgccggttgcagcattgtatccaaatttcacattatcgttagccagc 66 Query: 382 accttctcggtaacaacactgccattgacaccagcattcttggcgatcaa 431 ||||||||| | |||||||| ||||| |||||||||||||| || ||||| Sbjct: 65 accttctcgctgacaacacttccattaacaccagcattcttagctatcaa 16
>dbj|AB019234.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKN22 Length = 27229 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Minus Query: 394 acaacactgccattgacaccagcattcttggcgatcaacttgagtgggtagc 445 ||||| ||||||||||||||||| ||||||||||| ||||| |||||||||| Sbjct: 1913 acaacgctgccattgacaccagcgttcttggcgattaacttcagtgggtagc 1862 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 265 gcatgctccaggcaacatctcaccacctt 293 |||||||| |||||||||||||| ||||| Sbjct: 2197 gcatgctctaggcaacatctcacaacctt 2169
>gb|DQ226886.1| Boechera divaricarpa isolate SLW-C-H11 mRNA sequence Length = 331 Score = 69.9 bits (35), Expect = 9e-09 Identities = 131/163 (80%) Strand = Plus / Minus Query: 169 gagttgtccatggggttgacgaggggcgcgggctcaggctccttgatctcgacgaccacc 228 ||||||||||| |||||| ||| ||| || || ||||| ||||||||||| || || || Sbjct: 163 gagttgtccattgggttgccgacgggggctggttcaggttccttgatctcaacaacaaca 104 Query: 229 acgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctcacc 288 ||||||| ||| ||| ||||| || || || || || || |||| |||||||||||| Sbjct: 103 cagtccgacatcaagaacgtctttgcaactgaagctgcgtgttccaagcaacatctcaca 44 Query: 289 accttagtggggtcgatgataccagcagccatcaagtcctcgt 331 ||||| || || |||||||| || |||||||| || ||||||| Sbjct: 43 acctttgttggatcgatgattcctgcagccattaaatcctcgt 1
>gb|U46136.1|STU46136 Solanum tuberosum chaperonin-60 beta subunit mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 2078 Score = 67.9 bits (34), Expect = 4e-08 Identities = 54/61 (88%) Strand = Plus / Minus Query: 541 gtgcaccctccaccaacaacaataccttnctcaacggcagccttggttgcgtttagagca 600 ||||||||||| |||||||||||||||| |||||| || ||||| ||||| || |||||| Sbjct: 1449 gtgcaccctcctccaacaacaataccttcctcaacagccgcctttgttgcattgagagca 1390 Query: 601 t 601 | Sbjct: 1389 t 1389 Score = 44.1 bits (22), Expect = 0.54 Identities = 97/122 (79%) Strand = Plus / Minus Query: 205 ggctccttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcg 264 |||||||||||||| || ||||| || ||| ||| ||| ||||| ||||| || || Sbjct: 1785 ggctccttgatctcaaccaccacgcaatctgacatcaagaatgtcttagccacagatgca 1726 Query: 265 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaag 324 || || || || ||||| ||||||||||| || || || ||||| ||||||||||| ||| Sbjct: 1725 gcgtgttctagacaacacctcaccacctttgttggatcaatgatgccagcagccattaag 1666 Query: 325 tc 326 || Sbjct: 1665 tc 1664
>gb|L27473.1|CRECPN1C Chlamydomonas reinhardtii chaperonin beta-like subunit, partial cds Length = 1618 Score = 67.9 bits (34), Expect = 4e-08 Identities = 97/118 (82%) Strand = Plus / Minus Query: 213 gatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcatgctc 272 ||||||| |||||||||||| | | |||||||||||||||||||||| |||| | ||| Sbjct: 729 gatctcggtgaccaccacgtcagccagcaggaaggtcttggccaccgacacggcgttctc 670 Query: 273 caggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaagtcctcg 330 ||| | || | |||||||| |||||||||||||| || || |||||| ||||||| Sbjct: 669 cagcgagcagcggaccaccttggtggggtcgatgatgccggcctccatcaggtcctcg 612
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 63.9 bits (32), Expect = 6e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 253 gccaccgacgcggcatgctccaggcaacatctcaccacct 292 ||||||||||| |||||||||| ||||||||||||||||| Sbjct: 163146 gccaccgacgcagcatgctccaagcaacatctcaccacct 163107 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 381 aaccttctcggtaacaacactgccattgacaccagcatt 419 ||||||||| |||||||||||||| || ||||||||||| Sbjct: 162650 aaccttctcagtaacaacactgccgttaacaccagcatt 162612 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 289 accttagtggggtcgatgataccagcagccatcaagtcctc 329 ||||| ||||| || || ||||||||||||||||| ||||| Sbjct: 162831 accttggtgggatcaataataccagcagccatcaaatcctc 162791 Score = 42.1 bits (21), Expect = 2.1 Identities = 56/68 (82%) Strand = Plus / Minus Query: 508 atggcatcaaccttagcagccagcctcaaaagagtgcaccctccaccaacaacaatacct 567 ||||||||||| || | || |||| |||||| || || || || ||||||||||||||| Sbjct: 162418 atggcatcaacttttgatgcaagccgcaaaagcgtacagccacctccaacaacaatacct 162359 Query: 568 tnctcaac 575 | |||||| Sbjct: 162358 tcctcaac 162351
>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1435_F07 Length = 139041 Score = 63.9 bits (32), Expect = 6e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 253 gccaccgacgcggcatgctccaggcaacatctcaccacct 292 ||||||||||| |||||||||| ||||||||||||||||| Sbjct: 112173 gccaccgacgcagcatgctccaagcaacatctcaccacct 112134 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 381 aaccttctcggtaacaacactgccattgacaccagcatt 419 ||||||||| |||||||||||||| || ||||||||||| Sbjct: 111677 aaccttctcagtaacaacactgccgttaacaccagcatt 111639 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 289 accttagtggggtcgatgataccagcagccatcaagtcctc 329 ||||| ||||| || || ||||||||||||||||| ||||| Sbjct: 111858 accttggtgggatcaataataccagcagccatcaaatcctc 111818 Score = 42.1 bits (21), Expect = 2.1 Identities = 56/68 (82%) Strand = Plus / Minus Query: 508 atggcatcaaccttagcagccagcctcaaaagagtgcaccctccaccaacaacaatacct 567 ||||||||||| || | || |||| |||||| || || || || ||||||||||||||| Sbjct: 111445 atggcatcaacttttgatgcaagccgcaaaagcgtacagccacctccaacaacaatacct 111386 Query: 568 tnctcaac 575 | |||||| Sbjct: 111385 tcctcaac 111378
>gb|AC005223.1| Arabidopsis thaliana chromosome I BAC T5A14, complete sequence Length = 87967 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 382 accttctcggtaacaacactgccattgacaccagcattcttggcgat 428 ||||||||| |||| ||||| ||||| |||||||||||||||||||| Sbjct: 54712 accttctcgctaactacacttccattaacaccagcattcttggcgat 54666 Score = 48.1 bits (24), Expect = 0.034 Identities = 99/124 (79%) Strand = Plus / Minus Query: 169 gagttgtccatggggttgacgaggggcgcgggctcaggctccttgatctcgacgaccacc 228 ||||||||||| |||||| ||| ||| | || ||||| ||||||||||| || || || Sbjct: 55104 gagttgtccattgggttgccgacgggaactggttcaggttccttgatctcaacaacaacg 55045 Query: 229 acgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctcacc 288 ||||||| ||| ||| ||||| || ||||| || || || |||| |||||||||||| Sbjct: 55044 cagtccgacatcaagaaagtctttgcaaccgaagctgcgtgttccaagcaacatctcaca 54985 Query: 289 acct 292 |||| Sbjct: 54984 acct 54981 Score = 48.1 bits (24), Expect = 0.034 Identities = 32/35 (91%) Strand = Plus / Minus Query: 538 agagtgcaccctccaccaacaacaataccttnctc 572 |||||||| || ||||||||||||||||||| ||| Sbjct: 54482 agagtgcaaccaccaccaacaacaataccttcctc 54448 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 301 tcgatgataccagcagccatcaagtcctcgtact 334 |||||||| || ||||||||||| |||||||||| Sbjct: 54880 tcgatgattcctgcagccatcaaatcctcgtact 54847
>gb|L27471.1|CRECPN1A Chlamydomonas reinhardtii chaperonin beta-like subunit, complete cds Length = 1970 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 222 gaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaaca 281 |||||||||||||| | |||||||||||||||||||||| |||| | ||||| | | || Sbjct: 1227 gaccaccacgtccgccagcaggaaggtcttggccaccgacacggcgttctccatggagca 1168 Query: 282 tctcaccaccttagtggggtcgatgat 308 | |||||||| | |||||||||||| Sbjct: 1167 gcggaccaccttggaggggtcgatgat 1141
>dbj|AK063576.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-H02, full insert sequence Length = 1124 Score = 56.0 bits (28), Expect = 1e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 557 caacaataccttnctcaacggcagccttggttgcgtttagagc 599 |||||||||||| ||||| ||||||||||||||||| ||||| Sbjct: 657 caacaataccttcttcaactgcagccttggttgcgttgagagc 615
>dbj|AP000603.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRP15 Length = 83287 Score = 54.0 bits (27), Expect = 6e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 381 aaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaa 431 |||||||||| | |||||||| ||||| |||||||||||||| || ||||| Sbjct: 46053 aaccttctcgctgacaacacttccattaacaccagcattcttagctatcaa 46003
>dbj|AB158542.1| Ipomoea nil cpn60 beta mRNA for 60 kDa chaperonin beta subunit-like protein, partial cds Length = 437 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 277 caacatctcaccaccttagtggggtcgatgataccagcagccatcaagtc 326 ||||||||||||||||| || || || || || ||||||||||||||||| Sbjct: 50 caacatctcaccaccttggttggatcaataattccagcagccatcaagtc 1
>gb|BT013332.1| Lycopersicon esculentum clone 135060F, mRNA sequence Length = 2189 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 394 acaacactgccattgacaccagcattcttggcgatcaactt 434 |||||||| ||||| ||||||||||||||||| || ||||| Sbjct: 1625 acaacacttccattaacaccagcattcttggctattaactt 1585 Score = 48.1 bits (24), Expect = 0.034 Identities = 48/56 (85%) Strand = Plus / Minus Query: 265 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 320 |||||||||| ||||||||| ||||| || || || || || |||||||||||||| Sbjct: 1754 gcatgctccaagcaacatcttaccacttttgtaggatcaattataccagcagccat 1699
>gb|U21139.1|PSU21139 Pisum sativum chaperonin precursor mRNA, chloroplast gene encoding chloroplast protein, complete cds Length = 2162 Score = 48.1 bits (24), Expect = 0.034 Identities = 48/56 (85%) Strand = Plus / Minus Query: 265 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 320 ||||| |||||||||||||| |||||||| || || || ||||| || |||||||| Sbjct: 1794 gcatgttccaggcaacatctgaccacctttgttggatcaatgatccctgcagccat 1739 Score = 48.1 bits (24), Expect = 0.034 Identities = 39/44 (88%) Strand = Plus / Minus Query: 379 agaaccttctcggtaacaacactgccattgacaccagcattctt 422 ||||||||||| | |||||||| ||||| |||||||||||||| Sbjct: 1680 agaaccttctcactcacaacactaccattaacaccagcattctt 1637
>dbj|AK108892.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-E06, full insert sequence Length = 2254 Score = 46.1 bits (23), Expect = 0.14 Identities = 59/71 (83%) Strand = Plus / Minus Query: 415 gcattcttggcgatcaacttgagtgggtagcacagcgccctcctcactatctcagctccg 474 ||||||| ||||||| ||| ||||||||| ||||||| || |||| || || || ||| Sbjct: 1556 gcattctctgcgatcagcttcagtgggtaggtcagcgccttcttcacaatttcggcaccg 1497 Query: 475 accttctgctc 485 ||||||||||| Sbjct: 1496 accttctgctc 1486
>gb|AF233387.1| Rhodococcus equi GroEL (groEL) gene, complete cds; and unknown genes Length = 4713 Score = 44.1 bits (22), Expect = 0.54 Identities = 46/54 (85%) Strand = Plus / Minus Query: 298 gggtcgatgataccagcagccatcaagtcctcgtactgcccagtggctgcgttg 351 |||||| |||| |||||||||| || ||||||||||| || ||||| |||||| Sbjct: 4311 gggtcgttgatgccagcagccagcaggtcctcgtactcaccggtggcggcgttg 4258
>ref|XM_975351.1| PREDICTED: Mus musculus similar to odd Oz/ten-m homolog 2 (LOC669490), mRNA Length = 7697 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 168 ggagttgtccatggggttgacg 189 |||||||||||||||||||||| Sbjct: 2277 ggagttgtccatggggttgacg 2256
>ref|XM_546253.2| PREDICTED: Canis familiaris similar to odd Oz/ten-m homolog 2 (LOC489135), mRNA Length = 8210 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 168 ggagttgtccatggggttgacg 189 |||||||||||||||||||||| Sbjct: 3873 ggagttgtccatggggttgacg 3852
>emb|AL645912.18| Mouse DNA sequence from clone RP23-134G19 on chromosome 11 Contains the 5' end of the gene for a novel protein similar to human KIBRA, a pseudogene similar to part of actin, the Odz2 gene for odd Oz/ten-m homolog 2 (Drosophila) and two CpG islands, complete sequence Length = 186736 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 168 ggagttgtccatggggttgacg 189 |||||||||||||||||||||| Sbjct: 113689 ggagttgtccatggggttgacg 113710
>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome Length = 1993564 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 289 accttagtggggtcgatgataccagc 314 |||||||| ||||||||||||||||| Sbjct: 381194 accttagttgggtcgatgataccagc 381169
>ref|NM_011856.2| Mus musculus odd Oz/ten-m homolog 2 (Drosophila) (Odz2), mRNA Length = 8797 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 168 ggagttgtccatggggttgacg 189 |||||||||||||||||||||| Sbjct: 4366 ggagttgtccatggggttgacg 4345
>dbj|AB025411.1| Mus musculus mRNA for Ten-m2, complete cds Length = 8797 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 168 ggagttgtccatggggttgacg 189 |||||||||||||||||||||| Sbjct: 4366 ggagttgtccatggggttgacg 4345
>ref|XM_614930.2| PREDICTED: Bos taurus similar to odd Oz/ten-m homolog 2 (LOC541183), mRNA Length = 4770 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 168 ggagttgtccatggggttgac 188 ||||||||||||||||||||| Sbjct: 1563 ggagttgtccatggggttgac 1543
>emb|AL592423.8| Human DNA sequence from clone RP11-1A24 on chromosome 6 Contains part of the GRM1 gene for metabotropic glutamate receptor 1 and a novel pseudogene, complete sequence Length = 53728 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 tgcatttttcttatctcaaaa 62 ||||||||||||||||||||| Sbjct: 4551 tgcatttttcttatctcaaaa 4531
>gb|AF324500.1| Anabaena sp. L-31 groESL operon, complete sequence Length = 2599 Score = 42.1 bits (21), Expect = 2.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 562 ataccttnctcaacggcagccttggttgcgtt 593 ||||||| ||||| ||||||||||||||||| Sbjct: 2060 ataccttcttcaacagcagccttggttgcgtt 2029
>gb|AC154516.2| Mus musculus BAC clone RP24-83D23 from chromosome 14, complete sequence Length = 216566 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 120 ccacatcctctggagagactccac 143 |||| ||||||||||||||||||| Sbjct: 70428 ccacttcctctggagagactccac 70405
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 tccttgatggcatcaacctt 521 |||||||||||||||||||| Sbjct: 938152 tccttgatggcatcaacctt 938133
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 tctcgacgaccaccacgtcc 234 |||||||||||||||||||| Sbjct: 36065 tctcgacgaccaccacgtcc 36084
>gb|AY424337.1| Lactobacillus rhamnosus strain DSM 20021 GroEL (hsp60) gene, partial cds Length = 506 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 tcaacggcagccttggttgc 590 |||||||||||||||||||| Sbjct: 83 tcaacggcagccttggttgc 64
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 tctcgacgaccaccacgtcc 234 |||||||||||||||||||| Sbjct: 839910 tctcgacgaccaccacgtcc 839929
>gb|AC129219.3| Mus musculus BAC clone RP24-474C15 from chromosome 14, complete sequence Length = 195935 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 120 ccacatcctctggagagactccac 143 |||| ||||||||||||||||||| Sbjct: 148108 ccacttcctctggagagactccac 148085
>gb|AC116470.12| Mus musculus chromosome 16, clone RP23-383N18, complete sequence Length = 194593 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ctctcaaaacttggttcatg 104 |||||||||||||||||||| Sbjct: 46054 ctctcaaaacttggttcatg 46073
>gb|AC129595.3| Mus musculus BAC clone RP23-257H19 from chromosome 7, complete sequence Length = 214318 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 aacttggttcatgctaccaaaaat 115 |||||||||||||||| ||||||| Sbjct: 67422 aacttggttcatgctatcaaaaat 67399
>ref|XM_809994.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053503893.50) partial mRNA Length = 1215 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 536 aaagagtgcaccctccacca 555 |||||||||||||||||||| Sbjct: 159 aaagagtgcaccctccacca 140
>ref|XM_546476.2| PREDICTED: Canis familiaris similar to RIKEN cDNA E130107N23 (LOC489358), mRNA Length = 1576 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 tcggtaacaacactgccatt 407 |||||||||||||||||||| Sbjct: 1031 tcggtaacaacactgccatt 1012
>gb|AC164642.3| Mus musculus BAC clone RP23-248L4 from chromosome 6, complete sequence Length = 212166 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 agcctcaaaagagtgcaccc 548 |||||||||||||||||||| Sbjct: 178919 agcctcaaaagagtgcaccc 178900
>gb|AC164636.4| Mus musculus BAC clone RP23-70P16 from chromosome 6, complete sequence Length = 212096 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 529 agcctcaaaagagtgcaccc 548 |||||||||||||||||||| Sbjct: 183735 agcctcaaaagagtgcaccc 183754
>emb|AL049867.2|HSJ738I16 Human DNA sequence from clone RP4-738I16 on chromosome 20p11.22-12.2 Contains STSs and GSSs, complete sequence Length = 96444 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 tagcagccagcctcaaaaga 540 |||||||||||||||||||| Sbjct: 47921 tagcagccagcctcaaaaga 47902
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 tctcgacgaccaccacgtcc 234 |||||||||||||||||||| Sbjct: 682326 tctcgacgaccaccacgtcc 682345
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 285 caccaccttagtggggtcgatgat 308 ||||||||| |||||||||||||| Sbjct: 3516159 caccaccttggtggggtcgatgat 3516136
>gb|AC115621.3| Homo sapiens BAC clone RP11-315D13 from 4, complete sequence Length = 148726 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 tttttcttatctcaaaacta 65 |||||||||||||||||||| Sbjct: 110055 tttttcttatctcaaaacta 110036
>dbj|AB236859.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C766 Length = 1971 Score = 40.1 bits (20), Expect = 8.4 Identities = 31/35 (88%) Strand = Plus / Minus Query: 547 cctccaccaacaacaataccttnctcaacggcagc 581 ||||||||| ||||||||||| ||||| |||||| Sbjct: 1411 cctccaccaggaacaataccttcctcaatggcagc 1377
>dbj|AB236852.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, partial cds, clone: C618 Length = 1443 Score = 40.1 bits (20), Expect = 8.4 Identities = 31/35 (88%) Strand = Plus / Minus Query: 547 cctccaccaacaacaataccttnctcaacggcagc 581 ||||||||| ||||||||||| ||||| |||||| Sbjct: 1006 cctccaccaggaacaataccttcctcaatggcagc 972
>dbj|AB236850.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C580 Length = 1986 Score = 40.1 bits (20), Expect = 8.4 Identities = 31/35 (88%) Strand = Plus / Minus Query: 547 cctccaccaacaacaataccttnctcaacggcagc 581 ||||||||| ||||||||||| ||||| |||||| Sbjct: 1433 cctccaccaggaacaataccttcctcaatggcagc 1399
>dbj|AB236844.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C447 Length = 1999 Score = 40.1 bits (20), Expect = 8.4 Identities = 31/35 (88%) Strand = Plus / Minus Query: 547 cctccaccaacaacaataccttnctcaacggcagc 581 ||||||||| ||||||||||| ||||| |||||| Sbjct: 1429 cctccaccaggaacaataccttcctcaatggcagc 1395
>dbj|AB236783.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C1772 Length = 2038 Score = 40.1 bits (20), Expect = 8.4 Identities = 31/35 (88%) Strand = Plus / Minus Query: 547 cctccaccaacaacaataccttnctcaacggcagc 581 ||||||||| ||||||||||| ||||| |||||| Sbjct: 1421 cctccaccaggaacaataccttcctcaatggcagc 1387
>dbj|AB236779.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C1724 Length = 1982 Score = 40.1 bits (20), Expect = 8.4 Identities = 31/35 (88%) Strand = Plus / Minus Query: 547 cctccaccaacaacaataccttnctcaacggcagc 581 ||||||||| ||||||||||| ||||| |||||| Sbjct: 1413 cctccaccaggaacaataccttcctcaatggcagc 1379
>dbj|AB236775.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, partial cds, clone: C1598 Length = 2018 Score = 40.1 bits (20), Expect = 8.4 Identities = 31/35 (88%) Strand = Plus / Minus Query: 547 cctccaccaacaacaataccttnctcaacggcagc 581 ||||||||| ||||||||||| ||||| |||||| Sbjct: 1357 cctccaccaggaacaataccttcctcaatggcagc 1323
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 ccagcctcaaaagagtgcac 546 |||||||||||||||||||| Sbjct: 1902020 ccagcctcaaaagagtgcac 1902039
>gb|AF079317.1| Sphingomonas aromaticivorans plasmid pNL1, complete plasmid sequence Length = 184457 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 ctccttgatctcgacgaccaccac 230 ||||||||||||| |||||||||| Sbjct: 73942 ctccttgatctcgccgaccaccac 73965
>gb|AF065610.1|AF065610 Toxoplasma gondii strain 76K heat shock protein 60 pseudogene, mRNA sequence Length = 2442 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 295 gtggggtcgatgataccagcagccatca 322 |||||||||||||| || |||||||||| Sbjct: 1633 gtggggtcgatgatgccggcagccatca 1606
>gb|AF065609.1|AF065609 Toxoplasma gondii strain 76K heat shock protein 60 mRNA, complete cds Length = 2430 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 295 gtggggtcgatgataccagcagccatca 322 |||||||||||||| || |||||||||| Sbjct: 1621 gtggggtcgatgatgccggcagccatca 1594
>gb|AC007630.4|AC007630 Homo sapiens chromosome 20 clone P1-7739, complete sequence Length = 169494 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 tagcagccagcctcaaaaga 540 |||||||||||||||||||| Sbjct: 66185 tagcagccagcctcaaaaga 66166
>gb|AC141643.4| Mus musculus BAC clone RP23-198F6 from chromosome 7, complete sequence Length = 237233 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 cgtcaggaaggtcttggcca 256 |||||||||||||||||||| Sbjct: 177375 cgtcaggaaggtcttggcca 177394
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 tctcgacgaccaccacgtcc 234 |||||||||||||||||||| Sbjct: 590826 tctcgacgaccaccacgtcc 590845
>emb|BX000537.11| Mouse DNA sequence from clone RP24-392J24 on chromosome X, complete sequence Length = 162188 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 ttaaaccacatcctctggag 134 |||||||||||||||||||| Sbjct: 5328 ttaaaccacatcctctggag 5347
>emb|AL163973.1|CNS05TBS Human chromosome 14 DNA sequence BAC C-2213F21 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 116503 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 atcacattgcatttttcttatctc 58 ||||||||||||||| |||||||| Sbjct: 72480 atcacattgcattttacttatctc 72503 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,714,991 Number of Sequences: 3902068 Number of extensions: 4714991 Number of successful extensions: 86816 Number of sequences better than 10.0: 85 Number of HSP's better than 10.0 without gapping: 85 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86371 Number of HSP's gapped (non-prelim): 429 length of query: 615 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 592 effective length of database: 17,143,297,704 effective search space: 10148832240768 effective search space used: 10148832240768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
