ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal1j20 |
|---|---|
| Clone Library Name | barley_pub |
>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 186 bits (471), Expect = 3e-47 Identities = 91/100 (91%), Positives = 94/100 (94%) Frame = -3 Query: 422 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKS 243 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEEL KENVK SSSTG ITLSVT+S Sbjct: 233 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENVKNTSSSTGKITLSVTQS 292 Query: 242 KPETXEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 123 KPET EVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLE Sbjct: 293 KPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 332
>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 185 bits (470), Expect = 3e-47 Identities = 90/100 (90%), Positives = 94/100 (94%) Frame = -3 Query: 422 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKS 243 VPSYRGSSFLDPKGRGGS GYDNAVALPAGGRGDEEEL KEN+K SSSTG ITLSVTKS Sbjct: 230 VPSYRGSSFLDPKGRGGSAGYDNAVALPAGGRGDEEELVKENIKDVSSSTGKITLSVTKS 289 Query: 242 KPETXEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 123 KPET EVIGVFES+QPSDTDLG+KAPKDVKIQG+WYAQLE Sbjct: 290 KPETGEVIGVFESIQPSDTDLGSKAPKDVKIQGIWYAQLE 329
>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 325 Score = 183 bits (465), Expect = 1e-46 Identities = 94/102 (92%), Positives = 95/102 (93%) Frame = -3 Query: 422 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKS 243 VPSYRGSSFLDPKGRGGSTGYDNA ALP GGRGDEEELAKENVK SSSTGNITLSVTKS Sbjct: 226 VPSYRGSSFLDPKGRGGSTGYDNAGALPRGGRGDEEELAKENVKNASSSTGNITLSVTKS 285 Query: 242 KPETXEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLESN 117 KPET EVIGVFESVQPSDTDL +APKDVKIQGVWYAQLESN Sbjct: 286 KPETGEVIGVFESVQPSDTDL--EAPKDVKIQGVWYAQLESN 325
>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 182 bits (462), Expect = 3e-46 Identities = 89/100 (89%), Positives = 93/100 (93%) Frame = -3 Query: 422 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKS 243 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEEL KENVK +S TG ITLSVT+S Sbjct: 230 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENVKNTASLTGKITLSVTQS 289 Query: 242 KPETXEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 123 KPET EVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLE Sbjct: 290 KPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 329
>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 181 bits (459), Expect = 6e-46 Identities = 89/101 (88%), Positives = 93/101 (92%) Frame = -3 Query: 422 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKS 243 VPSYRGSSFLDPKGRG STGYDNAVALPAGGRGDEEEL KEN K +SS G ITLSVT++ Sbjct: 229 VPSYRGSSFLDPKGRGASTGYDNAVALPAGGRGDEEELGKENNKSAASSKGKITLSVTQT 288 Query: 242 KPETXEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 120 KPET EVIGVFES+QPSDTDLGAKAPKDVKIQGVWYAQLES Sbjct: 289 KPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES 329
>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 180 bits (456), Expect = 1e-45 Identities = 88/100 (88%), Positives = 91/100 (91%) Frame = -3 Query: 422 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKS 243 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEEL KENVK ++S G ITL VTKS Sbjct: 233 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELVKENVKNTAASVGEITLKVTKS 292 Query: 242 KPETXEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 123 KPET EVIGVFES+QPSDTDLGAK PKDVKIQGVWY QLE Sbjct: 293 KPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQLE 332
>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 333 Score = 179 bits (455), Expect = 2e-45 Identities = 87/101 (86%), Positives = 92/101 (91%) Frame = -3 Query: 422 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKS 243 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEEL KENVK +S TG IT +VTKS Sbjct: 233 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENVKNTASLTGKITFTVTKS 292 Query: 242 KPETXEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 120 P+T EVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLES Sbjct: 293 NPQTGEVIGVFESIQPSDTDLGAKTPKDVKIQGIWYAQLES 333
>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 331 Score = 179 bits (454), Expect = 2e-45 Identities = 86/100 (86%), Positives = 92/100 (92%) Frame = -3 Query: 422 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKS 243 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEEL+KENVK ++S G ITL +TKS Sbjct: 232 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELSKENVKNTAASVGEITLKITKS 291 Query: 242 KPETXEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 123 KPET EVIGVFES+QPSDTDLGAK PKDVKIQGVWY Q+E Sbjct: 292 KPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQIE 331
>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 176 bits (446), Expect = 2e-44 Identities = 87/100 (87%), Positives = 91/100 (91%) Frame = -3 Query: 422 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKS 243 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEEL KEN K +SS G ITLSVT S Sbjct: 231 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENNKNVASSKGTITLSVTSS 290 Query: 242 KPETXEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 123 KPET EVIGVF+S+QPSDTDLGAK PKDVKI+GVWYAQLE Sbjct: 291 KPETGEVIGVFQSLQPSDTDLGAKVPKDVKIEGVWYAQLE 330
>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 291 Score = 143 bits (361), Expect = 1e-34 Identities = 71/100 (71%), Positives = 79/100 (79%) Frame = -3 Query: 422 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKS 243 VPSYRGSSFLDPKGRGGSTGYDNAVALPA R D EEL KENVK + G+ SV K Sbjct: 194 VPSYRGSSFLDPKGRGGSTGYDNAVALPA--RADAEELLKENVKITKALKGSAVFSVAKV 251 Query: 242 KPETXEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 123 P T E+ GVFES+QPSDTDLGAK PKD+K+ G+WYAQL+ Sbjct: 252 DPVTGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK 291
>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 293 Score = 140 bits (352), Expect = 2e-33 Identities = 70/99 (70%), Positives = 76/99 (76%) Frame = -3 Query: 422 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKS 243 VPSYRGSSFLDPKGRGGSTGYDNAVALPA R D EEL KENVK + G+ SV K Sbjct: 195 VPSYRGSSFLDPKGRGGSTGYDNAVALPA--RADAEELLKENVKSTKALKGSAVFSVAKV 252 Query: 242 KPETXEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 126 T E+ GVFES+QPSDTDLGAK PKD+KI G+WY QL Sbjct: 253 NTATGEIAGVFESIQPSDTDLGAKPPKDIKITGLWYGQL 291
>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 338 Score = 138 bits (347), Expect = 6e-33 Identities = 66/99 (66%), Positives = 77/99 (77%) Frame = -3 Query: 422 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKS 243 VPSYRG++FLDPKGRGG++GYD AVALPA G D+EE AKEN K ++S G I V K Sbjct: 238 VPSYRGATFLDPKGRGGASGYDTAVALPASG--DDEEYAKENSKSTAASVGTIAFKVAKV 295 Query: 242 KPETXEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 126 ET E+ GVFES+QPSDTDLGAK PKD+K GVWYAQ+ Sbjct: 296 NAETGEIAGVFESIQPSDTDLGAKVPKDIKTSGVWYAQI 334
>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 273 Score = 117 bits (292), Expect = 1e-26 Identities = 57/100 (57%), Positives = 74/100 (74%) Frame = -3 Query: 422 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKS 243 VPSYRG++FLDPKGRG +GYDNAVALPA + D+E+L + NVK G I+L + K Sbjct: 176 VPSYRGAAFLDPKGRGVVSGYDNAVALPA--QADDEDLTRTNVKRAEILNGKISLQIAKV 233 Query: 242 KPETXEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 123 + E+ G FES QPSDTDLGA PK+VKI+G++YA++E Sbjct: 234 DSSSGEIAGTFESEQPSDTDLGADEPKEVKIRGIFYARVE 273
>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 275 Score = 113 bits (283), Expect = 2e-25 Identities = 60/99 (60%), Positives = 75/99 (75%) Frame = -3 Query: 422 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKS 243 VPSYRG++FLDPKGRG +TGYDNAVALPA D+E+ A NVK G+I+L VTK Sbjct: 177 VPSYRGATFLDPKGRGLATGYDNAVALPA--TADKEDYA--NVKQTPIGKGSISLQVTKV 232 Query: 242 KPETXEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 126 T E+ GVF+S QPSDTDLGAK P +VKI+G++YA++ Sbjct: 233 DQATGEIAGVFDSEQPSDTDLGAKEPVEVKIRGIFYARV 271
>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 107 bits (267), Expect = 1e-23 Identities = 56/100 (56%), Positives = 72/100 (72%) Frame = -3 Query: 422 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKS 243 VPSYR ++FLDPKGRG ++GYD+A+ALP + EEELA+ NVK S + G I+L+V K Sbjct: 174 VPSYRTANFLDPKGRGLASGYDSAIALP---QAKEEELARANVKRFSLTKGQISLNVAKV 230 Query: 242 KPETXEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 123 T E+ G FES Q SD D+GA P +VKIQGV+YA +E Sbjct: 231 DGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 107 bits (267), Expect = 1e-23 Identities = 56/100 (56%), Positives = 72/100 (72%) Frame = -3 Query: 422 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKS 243 VPSYR ++FLDPKGRG ++GYD+A+ALP + EEELA+ NVK S + G I+L+V K Sbjct: 174 VPSYRTANFLDPKGRGLASGYDSAIALP---QAKEEELARANVKRFSLTKGQISLNVAKV 230 Query: 242 KPETXEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 123 T E+ G FES Q SD D+GA P +VKIQGV+YA +E Sbjct: 231 DGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 277 Score = 106 bits (265), Expect = 2e-23 Identities = 54/100 (54%), Positives = 72/100 (72%) Frame = -3 Query: 422 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKS 243 VPSYR S+FLDPK RG +TGY++AVA+P+ G D E+L KENVK + G I+L+V+K Sbjct: 176 VPSYRTSNFLDPKARGLTTGYESAVAIPSAG--DAEDLTKENVKRFVTGQGEISLAVSKV 233 Query: 242 KPETXEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 123 T EV GVF ++QPSDTD+G K DVK+ G +Y ++E Sbjct: 234 DGATGEVAGVFTAIQPSDTDMGGKEAVDVKLVGQFYGRIE 273
>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 274 Score = 102 bits (255), Expect = 3e-22 Identities = 51/102 (50%), Positives = 69/102 (67%) Frame = -3 Query: 422 VPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKS 243 VPSYRG+ FLDPK RG TGYDNAVALP+ + + N K G ++L VT+ Sbjct: 177 VPSYRGAGFLDPKARGLYTGYDNAVALPSAA-----DKFRTNKKETPLGKGTLSLQVTQV 231 Query: 242 KPETXEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLESN 117 T E+ G+FES QPSDTDLGAK P DVK++G++Y +++++ Sbjct: 232 DGSTGEIAGIFESEQPSDTDLGAKEPLDVKVRGIFYGRVDTD 273
>PSBO_PINPS (P81665) Oxygen-evolving enhancer protein 1 (OEE1) (33 kDa subunit| of oxygen evolving system of photosystem II) (33 kDa thylakoid membrane protein) (Fragments) Length = 26 Score = 40.4 bits (93), Expect = 0.002 Identities = 17/20 (85%), Positives = 19/20 (95%) Frame = -3 Query: 386 KGRGGSTGYDNAVALPAGGR 327 + +GGSTGYDNAVALPAGGR Sbjct: 7 QSKGGSTGYDNAVALPAGGR 26
>EBI_DROME (Q95RJ9) F-box-like/WD repeat protein ebi| Length = 700 Score = 32.0 bits (71), Expect = 0.61 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 7/54 (12%) Frame = -3 Query: 407 GSSFLDPKGRGG---STGYDNAVALPAGG----RGDEEELAKENVKXGSSSTGN 267 G ++ G GG STG N+ + PAGG G ++ ++ + + GSSS+GN Sbjct: 170 GGTYAGNNGAGGNQASTGGSNSTSTPAGGDLAAPGASQKKSQNSNEAGSSSSGN 223
>MRT4_SCHPO (Q9USZ6) mRNA turnover protein 4 homolog| Length = 241 Score = 31.2 bits (69), Expect = 1.0 Identities = 27/63 (42%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = -3 Query: 350 VALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKSKPETXEVIGVFES-VQPSDTDLGA 174 V A G EEE A+ K G + L T SKP+ EVIG FES VQ GA Sbjct: 72 VMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPD--EVIGYFESFVQNDFARAGA 129 Query: 173 KAP 165 AP Sbjct: 130 VAP 132
>CH10_ENTFA (Q93EU7) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 94 Score = 30.8 bits (68), Expect = 1.4 Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Frame = -3 Query: 311 LAKENVKXGSSSTGNITL-SVTKSKPETXEVIGVFESVQPSDTDLGAKAPKDVKI 150 +AKE K + G I L SV K KP+T EVI V E + G K P +VKI Sbjct: 13 VAKEEEK----TVGGIVLASVAKEKPQTGEVIAVGEG---RVLENGTKVPMEVKI 60
>MECR_RAT (Q9Z311) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) (Nuclear receptor-binding factor 1) (NRBF-1) Length = 373 Score = 30.0 bits (66), Expect = 2.3 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = -3 Query: 200 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVK--ILIFCACIR 69 QP + KD+K++G W +Q + N S E K ILI C IR Sbjct: 291 QPVTASVSMLIFKDLKLRGFWLSQWKKNHSPDEFKELILILCNLIR 336
>ILVC_HELPJ (Q9ZMA9) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 330 Score = 29.6 bits (65), Expect = 3.0 Identities = 15/25 (60%), Positives = 19/25 (76%) Frame = -3 Query: 263 TLSVTKSKPETXEVIGVFESVQPSD 189 +LSV+K+K E EV+GV E VQ SD Sbjct: 52 SLSVSKAKKEGFEVLGVKELVQQSD 76
>MECR_MOUSE (Q9DCS3) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) Length = 373 Score = 29.3 bits (64), Expect = 3.9 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = -3 Query: 200 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVKILIFCAC 75 QP + KD+K++G W +Q + N S E K LI C Sbjct: 291 QPVTASVSLLIFKDLKLRGFWLSQWKKNHSPDEFKELILTLC 332
>SY62_DISOM (P24506) Synaptotagmin B (Synaptic vesicle protein O-p65-B)| Length = 439 Score = 28.9 bits (63), Expect = 5.1 Identities = 23/81 (28%), Positives = 35/81 (43%) Frame = -3 Query: 392 DPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKSKPETXEVIGV 213 D KG GG+ D+A G D+EE AKE K G I S+ +G+ Sbjct: 127 DVKGSGGNQDDDDAETGLTEGE-DKEEEAKEEEK-----LGKIQFSLDYDFQANQLTVGI 180 Query: 212 FESVQPSDTDLGAKAPKDVKI 150 ++ + D+G + VK+ Sbjct: 181 IQAAELPALDMGGTSDPYVKV 201
>FLB1_CAMJE (P56964) Flagellin B| Length = 571 Score = 28.9 bits (63), Expect = 5.1 Identities = 25/84 (29%), Positives = 35/84 (41%) Frame = -3 Query: 407 GSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKSKPETX 228 GS + G+ STG+ NA+A+ A + NV GS + TLS + T Sbjct: 410 GSGYSVGSGKNYSTGFANAIAISAA----SQLSTVYNVSAGSGFSSGSTLSQFATMKTT- 464 Query: 227 EVIGVFESVQPSDTDLGAKAPKDV 156 GV + T GA A D+ Sbjct: 465 -AFGVKDETAGVTTLKGAMAVMDI 487
>FLA1_CAMJE (P56963) Flagellin A| Length = 571 Score = 28.9 bits (63), Expect = 5.1 Identities = 25/84 (29%), Positives = 35/84 (41%) Frame = -3 Query: 407 GSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKSKPETX 228 GS + G+ STG+ NA+A+ A + NV GS + TLS + T Sbjct: 410 GSGYSVGSGKNYSTGFANAIAISAA----SQLSTVYNVSAGSGFSSGSTLSQFATMKTT- 464 Query: 227 EVIGVFESVQPSDTDLGAKAPKDV 156 GV + T GA A D+ Sbjct: 465 -AFGVKDETAGVTTLKGAMAVMDI 487
>ZBTB9_HUMAN (Q96C00) Zinc finger and BTB domain-containing protein 9| Length = 473 Score = 28.5 bits (62), Expect = 6.7 Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 9/76 (11%) Frame = -3 Query: 410 RGSSFLDPKGRGGSTGYDNAVALPAGGRGDE---------EELAKENVKXGSSSTGNITL 258 R S F P ST + P GG G E EE +E G+ TL Sbjct: 172 RSSPFQTPVQSSASTESPASTESPVGGEGSELGEVLQIQVEEEEEEEEDDDDEDQGSATL 231 Query: 257 SVTKSKPETXEVIGVF 210 S T P+ V GVF Sbjct: 232 SQT---PQPQRVSGVF 244
>SPT6H_CAEEL (P34703) Suppressor of Ty 6 homolog (Abnormal embryogenesis protein| 5) Length = 1521 Score = 28.1 bits (61), Expect = 8.8 Identities = 21/61 (34%), Positives = 30/61 (49%) Frame = -3 Query: 332 GRGDEEELAKENVKXGSSSTGNITLSVTKSKPETXEVIGVFESVQPSDTDLGAKAPKDVK 153 G DEEE E+ G G I + + K +T + + ES++PS+ D G P D K Sbjct: 223 GLEDEEEEIIEDDGEG----GEIKI---RRKKDTTKKSTLLESIEPSEIDRGFLLPGDKK 275 Query: 152 I 150 I Sbjct: 276 I 276
>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)| (Usher syndrome type IIa protein homolog) Length = 5193 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = +3 Query: 6 YTSIHTQTHCCLDSFLSTDQPTYACTKDEYL 98 +T T C D L QP Y+C +D+Y+ Sbjct: 3173 HTCYSPGTKVCCDGLLYDPQPGYSCCEDKYI 3203
>DP13B_MOUSE (Q8K3G9) DCC-interacting protein 13 beta (Dip13 beta) (Adapter| protein containing PH domain, PTB domain and leucine zipper motif 2) Length = 662 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/45 (31%), Positives = 20/45 (44%) Frame = -3 Query: 332 GRGDEEELAKENVKXGSSSTGNITLSVTKSKPETXEVIGVFESVQ 198 G+ E + +N+K NI T S PET E+I +Q Sbjct: 405 GKKQESSCSSQNIKNSDIEDDNIVPKATASIPETEELIAPGTPIQ 449
>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)| Length = 644 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/67 (25%), Positives = 30/67 (44%) Frame = +1 Query: 16 YTHKHIVASILSSPPTNPRMHAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSD 195 Y H S ++ PP P + Q+M+ TS+ ++ PW +S A+ P + S Sbjct: 474 YQHSTSAGSSVNPPPPPPPLFQQQMTTTTSSA----AASFVEQPWSSSSSRAIQPATTSA 529 Query: 196 GCTLSKT 216 + S + Sbjct: 530 SSSSSSS 536
>MYCD_RAT (Q8R5I7) Myocardin| Length = 938 Score = 28.1 bits (61), Expect = 8.8 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Frame = -3 Query: 392 DPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKXGSSSTGNITLSVTKSKPET-XEVIG 216 DP+G GGST + P G D +++ GS S N T S ++ ++ +V+G Sbjct: 171 DPQGSGGSTPDIKSTEAPLAGPLD----TIQDLTPGSESDKNDTASQLSNQSDSGKQVLG 226 Query: 215 VFESVQPSDTDLGAKAPKDVK 153 + P T + +K+ D K Sbjct: 227 PLSTPIPVHTAVKSKSLGDSK 247
>DPOL_NPVAC (P18131) DNA polymerase (EC 2.7.7.7)| Length = 984 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/47 (29%), Positives = 21/47 (44%) Frame = +3 Query: 18 HTQTHCCLDSFLSTDQPTYACTKDEYLHFCYALVRLELRVPHTLDLD 158 H + +D +S Y DEY FC+ +L ++P T D D Sbjct: 204 HNMSKASVDCIMSIGFVVYK--NDEYAKFCFMYHKLPTQIPETYDDD 248 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,513,780 Number of Sequences: 219361 Number of extensions: 878679 Number of successful extensions: 3244 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 3157 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3230 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
