ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1j19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1G6PI_STAS1 (Q49WA1) Glucose-6-phosphate isomerase (EC 5.3.1.9) (... 28 5.3
2T2R40_HUMAN (P59535) Taste receptor type 2 member 40 (T2R40) (T2... 28 6.9
3SYL_MESFL (Q6F0X5) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 27 9.0

>G6PI_STAS1 (Q49WA1) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)|
           (Phosphoglucose isomerase) (PGI) (Phosphohexose
           isomerase) (PHI)
          Length = 443

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -3

Query: 340 SWLVGLSDADAADAAERFSEQWPTDLVVGNHDCRDYTNGLVEVLTGQ 200
           S+L   +  +   ++ R S+++P  + VGNH    YT  L++ L G+
Sbjct: 84  SYLGARAAIEMLTSSFRNSDEYPEIVFVGNHLSSTYTQELIDYLDGK 130



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>T2R40_HUMAN (P59535) Taste receptor type 2 member 40 (T2R40) (T2R58) (G-protein|
           coupled receptor 60)
          Length = 323

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 125 FLLLLPFCSVALVLFTPHIASKYS*CNLLC 36
           FL+L  F ++AL L T +I   YS  N+LC
Sbjct: 252 FLILYIFNAIALFLSTSNIFDTYSSWNILC 281



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>SYL_MESFL (Q6F0X5) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 801

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 319 DADAADAAERFSEQWPTDLVVGNHD 245
           D D+A+A +RF +  P DL VG  +
Sbjct: 510 DIDSAEAKKRFEKWMPVDLYVGGQE 534


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,141,298
Number of Sequences: 219361
Number of extensions: 695141
Number of successful extensions: 2169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2169
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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