ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags29f07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 82 2e-12
2gb|AC087852.11| Oryza sativa chromosome 3 BAC OJ1124_H03 genomic... 82 2e-12
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
4dbj|AK069559.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
5ref|XM_469722.1| Oryza sativa (japonica cultivar-group), mRNA 64 4e-07
6gb|AC099013.1| Drosophila melanogaster, chromosome 2R, region 56... 42 1.4
7gb|AC008096.3|AC008096 Drosophila melanogaster, chromosome 2R, r... 42 1.4
8gb|AC147843.3| Ovis aries clone CH243-261D1, complete sequence 42 1.4
9gb|AE003796.3| Drosophila melanogaster chromosome 2R, section 54... 42 1.4
10gb|AC156027.2| Mus musculus BAC clone RP23-55O17 from chromosome... 42 1.4
11gb|AC004299.1|AC004299 Drosophila melanogaster DNA sequence (P1 ... 42 1.4
12emb|CT030193.7| Mouse DNA sequence from clone RP24-272P19 on chr... 42 1.4
13gb|AC145448.3| Dasypus novemcinctus clone VMRC5-267J9, complete ... 40 5.7
14gb|AC122535.3| Mus musculus BAC clone RP24-539K4 from chromosome... 40 5.7
15emb|AL356096.11| Human DNA sequence from clone RP11-366K1 on chr... 40 5.7
16gb|AC099526.5| Papio anubis clone RP41-308A9, complete sequence 40 5.7
17dbj|AB158486.1| Sus scrofa PPP1R11, ZNRD1, RNF39, GABBR1, MOG, U... 40 5.7
18emb|BX470068.7| Zebrafish DNA sequence from clone CH211-219C8 in... 40 5.7
19gb|AC154014.4| Mus musculus 6 BAC RP24-409C18 (Roswell Park Canc... 40 5.7
20emb|BX248304.8| Zebrafish DNA sequence from clone CH211-196K22 i... 40 5.7
21gb|AC154017.7| Mus musculus 6 BAC RP24-156H18 (Roswell Park Canc... 40 5.7
22gb|AF071080.3|AF071080 Mus musculus Mor 5'Beta5, MOR 5'Beta4, MO... 40 5.7
23gb|AC098811.3| Papio anubis clone RP41-367L14, complete sequence 40 5.7
24emb|CT030028.4| M.truncatula DNA sequence from clone MTH2-6B18 o... 40 5.7 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 194/240 (80%), Gaps = 5/240 (2%)
 Strand = Plus / Minus

                                                                            
Query: 181      aaactctccacatcctggtttgaatgaccaaaggaaacgcaggtctcaagcccatatatg 240
                |||||||| | | ||||| || |||||||||||||| |  || ||||||| ||| |||| 
Sbjct: 30399740 aaactctcaaaaacctggattcaatgaccaaaggaaccaaagatctcaagtccagatata 30399681

                                                                            
Query: 241      aatatgattcttgtcggcggtggcaagaggtccaaactcagaccatgcacttgtaacaac 300
                 ||||||| |||||| ||||| ||||||||||| ||| || |||||| ||||| ||| ||
Sbjct: 30399680 gatatgatgcttgtcagcggtagcaagaggtcctaacccacaccatgaacttgaaactac 30399621

                                                                            
Query: 301      cggcagcgaatggccctctaggatggtcgg-accc--tcgttcttcgacctcgaccatat 357
                || |   |||||||||| |||||| ||||| ||||  || || ||| | || ||||||||
Sbjct: 30399620 cgacgaagaatggccctgtaggatcgtcggtaccccatcctttttcaatcttgaccatat 30399561

                                                                            
Query: 358      gcaaacggacccatca-gagcagccagccgctatgcagttctcatccgggcttatacaag 416
                | |||| |||||||||  |||| ||||| |||||| |||| ||||| |||||||| ||||
Sbjct: 30399560 gtaaacagacccatcattagca-ccagcagctatggagttttcatcagggcttatgcaag 30399502
to top
>gb|AC087852.11| Oryza sativa chromosome 3 BAC OJ1124_H03 genomic sequence, complete
             sequence
          Length = 149380

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 194/240 (80%), Gaps = 5/240 (2%)
 Strand = Plus / Plus

                                                                         
Query: 181   aaactctccacatcctggtttgaatgaccaaaggaaacgcaggtctcaagcccatatatg 240
             |||||||| | | ||||| || |||||||||||||| |  || ||||||| ||| |||| 
Sbjct: 77275 aaactctcaaaaacctggattcaatgaccaaaggaaccaaagatctcaagtccagatata 77334

                                                                         
Query: 241   aatatgattcttgtcggcggtggcaagaggtccaaactcagaccatgcacttgtaacaac 300
              ||||||| |||||| ||||| ||||||||||| ||| || |||||| ||||| ||| ||
Sbjct: 77335 gatatgatgcttgtcagcggtagcaagaggtcctaacccacaccatgaacttgaaactac 77394

                                                                         
Query: 301   cggcagcgaatggccctctaggatggtcgg-accc--tcgttcttcgacctcgaccatat 357
             || |   |||||||||| |||||| ||||| ||||  || || ||| | || ||||||||
Sbjct: 77395 cgacgaagaatggccctgtaggatcgtcggtaccccatcctttttcaatcttgaccatat 77454

                                                                         
Query: 358   gcaaacggacccatca-gagcagccagccgctatgcagttctcatccgggcttatacaag 416
             | |||| |||||||||  |||| ||||| |||||| |||| ||||| |||||||| ||||
Sbjct: 77455 gtaaacagacccatcattagca-ccagcagctatggagttttcatcagggcttatgcaag 77513
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 194/240 (80%), Gaps = 5/240 (2%)
 Strand = Plus / Minus

                                                                            
Query: 181      aaactctccacatcctggtttgaatgaccaaaggaaacgcaggtctcaagcccatatatg 240
                |||||||| | | ||||| || |||||||||||||| |  || ||||||| ||| |||| 
Sbjct: 30491162 aaactctcaaaaacctggattcaatgaccaaaggaaccaaagatctcaagtccagatata 30491103

                                                                            
Query: 241      aatatgattcttgtcggcggtggcaagaggtccaaactcagaccatgcacttgtaacaac 300
                 ||||||| |||||| ||||| ||||||||||| ||| || |||||| ||||| ||| ||
Sbjct: 30491102 gatatgatgcttgtcagcggtagcaagaggtcctaacccacaccatgaacttgaaactac 30491043

                                                                            
Query: 301      cggcagcgaatggccctctaggatggtcgg-accc--tcgttcttcgacctcgaccatat 357
                || |   |||||||||| |||||| ||||| ||||  || || ||| | || ||||||||
Sbjct: 30491042 cgacgaagaatggccctgtaggatcgtcggtaccccatcctttttcaatcttgaccatat 30490983

                                                                            
Query: 358      gcaaacggacccatca-gagcagccagccgctatgcagttctcatccgggcttatacaag 416
                | |||| |||||||||  |||| ||||| |||||| |||| ||||| |||||||| ||||
Sbjct: 30490982 gtaaacagacccatcattagca-ccagcagctatggagttttcatcagggcttatgcaag 30490924
to top
>dbj|AK069559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019N18, full
            insert sequence
          Length = 2010

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 194/240 (80%), Gaps = 5/240 (2%)
 Strand = Plus / Minus

                                                                        
Query: 181  aaactctccacatcctggtttgaatgaccaaaggaaacgcaggtctcaagcccatatatg 240
            |||||||| | | ||||| || |||||||||||||| |  || ||||||| ||| |||| 
Sbjct: 1731 aaactctcaaaaacctggattcaatgaccaaaggaaccaaagatctcaagtccagatata 1672

                                                                        
Query: 241  aatatgattcttgtcggcggtggcaagaggtccaaactcagaccatgcacttgtaacaac 300
             ||||||| |||||| ||||| ||||||||||| ||| || |||||| ||||| ||| ||
Sbjct: 1671 gatatgatgcttgtcagcggtagcaagaggtcctaacccacaccatgaacttgaaactac 1612

                                                                        
Query: 301  cggcagcgaatggccctctaggatggtcgg-accc--tcgttcttcgacctcgaccatat 357
            || |   |||||||||| |||||| ||||| ||||  || || ||| | || ||||||||
Sbjct: 1611 cgacgaagaatggccctgtaggatcgtcggtaccccatcctttttcaatcttgaccatat 1552

                                                                        
Query: 358  gcaaacggacccatca-gagcagccagccgctatgcagttctcatccgggcttatacaag 416
            | |||| |||||||||  |||| ||||| |||||| |||| ||||| |||||||| ||||
Sbjct: 1551 gtaaacagacccatcattagca-ccagcagctatggagttttcatcagggcttatgcaag 1493
to top
>ref|XM_469722.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1530

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 146/179 (81%), Gaps = 5/179 (2%)
 Strand = Plus / Minus

                                                                        
Query: 242  atatgattcttgtcggcggtggcaagaggtccaaactcagaccatgcacttgtaacaacc 301
            ||||||| |||||| ||||| ||||||||||| ||| || |||||| ||||| ||| |||
Sbjct: 1514 atatgatgcttgtcagcggtagcaagaggtcctaacccacaccatgaacttgaaactacc 1455

                                                                        
Query: 302  ggcagcgaatggccctctaggatggtcgg-accc--tcgttcttcgacctcgaccatatg 358
            | |   |||||||||| |||||| ||||| ||||  || || ||| | || |||||||||
Sbjct: 1454 gacgaagaatggccctgtaggatcgtcggtaccccatcctttttcaatcttgaccatatg 1395

                                                                       
Query: 359  caaacggacccatca-gagcagccagccgctatgcagttctcatccgggcttatacaag 416
             |||| |||||||||  |||| ||||| |||||| |||| ||||| |||||||| ||||
Sbjct: 1394 taaacagacccatcattagca-ccagcagctatggagttttcatcagggcttatgcaag 1337
to top
>gb|AC099013.1| Drosophila melanogaster, chromosome 2R, region 56D-56E, BAC clone
             BACR25K02, complete sequence
          Length = 173347

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 83    ttttgatatttacaattgatt 103
             |||||||||||||||||||||
Sbjct: 68920 ttttgatatttacaattgatt 68900
to top
>gb|AC008096.3|AC008096 Drosophila melanogaster, chromosome 2R, region 56C-56D, BAC clone
            BACR21D20, complete sequence
          Length = 176813

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 83   ttttgatatttacaattgatt 103
            |||||||||||||||||||||
Sbjct: 1691 ttttgatatttacaattgatt 1711
to top
>gb|AC147843.3| Ovis aries clone CH243-261D1, complete sequence
          Length = 151538

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 118   tcatttacatgcaaacgagtgtcctcaagaatg 150
             ||||||||||||| | |||||||||||| ||||
Sbjct: 97011 tcatttacatgcatatgagtgtcctcaataatg 96979
to top
>gb|AE003796.3| Drosophila melanogaster chromosome 2R, section 54 of 73 of the complete
              sequence
          Length = 277421

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 83     ttttgatatttacaattgatt 103
              |||||||||||||||||||||
Sbjct: 265367 ttttgatatttacaattgatt 265347
to top
>gb|AC156027.2| Mus musculus BAC clone RP23-55O17 from chromosome 17, complete sequence
          Length = 214723

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 46    gcatgaggaaagttgacagac 66
             |||||||||||||||||||||
Sbjct: 57117 gcatgaggaaagttgacagac 57097
to top
>gb|AC004299.1|AC004299 Drosophila melanogaster DNA sequence (P1 DS07982 (D185)), complete
             sequence
          Length = 87585

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 83    ttttgatatttacaattgatt 103
             |||||||||||||||||||||
Sbjct: 59535 ttttgatatttacaattgatt 59515
to top
>emb|CT030193.7| Mouse DNA sequence from clone RP24-272P19 on chromosome 17, complete
              sequence
          Length = 159435

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 46     gcatgaggaaagttgacagac 66
              |||||||||||||||||||||
Sbjct: 131843 gcatgaggaaagttgacagac 131823
to top
>gb|AC145448.3| Dasypus novemcinctus clone VMRC5-267J9, complete sequence
          Length = 149428

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     ttgatatttacaattgatta 104
              ||||||||||||||||||||
Sbjct: 105996 ttgatatttacaattgatta 106015
to top
>gb|AC122535.3| Mus musculus BAC clone RP24-539K4 from chromosome 7, complete sequence
          Length = 186561

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   actaagtcatttacatgcaa 131
             ||||||||||||||||||||
Sbjct: 90648 actaagtcatttacatgcaa 90667
to top
>emb|AL356096.11| Human DNA sequence from clone RP11-366K1 on chromosome 13 Contains a
             novel gene and a CpG island, complete sequence
          Length = 190101

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    cggcaacagataaatgaaat 34
             ||||||||||||||||||||
Sbjct: 38138 cggcaacagataaatgaaat 38119
to top
>gb|AC099526.5| Papio anubis clone RP41-308A9, complete sequence
          Length = 143983

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 20    acagataaatgaaatcccctaaaa 43
             |||||||||||||||| |||||||
Sbjct: 34005 acagataaatgaaatcacctaaaa 34028
to top
>dbj|AB158486.1| Sus scrofa PPP1R11, ZNRD1, RNF39, GABBR1, MOG, UBD, OLF42-3, OLF42-2,
             OLF42-1, KRAB genes, complete cds
          Length = 156044

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   gcaggtctcaagcccatata 238
             ||||||||||||||||||||
Sbjct: 83058 gcaggtctcaagcccatata 83077
to top
>emb|BX470068.7| Zebrafish DNA sequence from clone CH211-219C8 in linkage group 1,
              complete sequence
          Length = 210511

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     tgctgtcagttttgatattt 93
              ||||||||||||||||||||
Sbjct: 202510 tgctgtcagttttgatattt 202529
to top
>gb|AC154014.4| Mus musculus 6 BAC RP24-409C18 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 161963

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    ctggtttgaatgaccaaagg 214
              ||||||||||||||||||||
Sbjct: 156123 ctggtttgaatgaccaaagg 156104
to top
>emb|BX248304.8| Zebrafish DNA sequence from clone CH211-196K22 in linkage group 14,
              complete sequence
          Length = 218178

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    ataaaagtgaaactctccac 191
              ||||||||||||||||||||
Sbjct: 172713 ataaaagtgaaactctccac 172732
to top
>gb|AC154017.7| Mus musculus 6 BAC RP24-156H18 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 193116

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 195    ctggtttgaatgaccaaagg 214
              ||||||||||||||||||||
Sbjct: 117256 ctggtttgaatgaccaaagg 117275
to top
>gb|AF071080.3|AF071080 Mus musculus Mor 5'Beta5, MOR 5'Beta4, MOR 5'beta3, MOR 5'beta2, and
            MOR 5'beta1 genes, complete cds; and Hbb gene, Hbb-D
            allele, locus control region
          Length = 63797

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 112  actaagtcatttacatgcaa 131
            ||||||||||||||||||||
Sbjct: 7865 actaagtcatttacatgcaa 7884
to top
>gb|AC098811.3| Papio anubis clone RP41-367L14, complete sequence
          Length = 182644

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 20     acagataaatgaaatcccctaaaa 43
              |||||||||||||||| |||||||
Sbjct: 178773 acagataaatgaaatcacctaaaa 178796
to top
>emb|CT030028.4| M.truncatula DNA sequence from clone MTH2-6B18 on chromosome 3,
             complete sequence
          Length = 85486

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   taagtcatttacatgcaaac 133
             ||||||||||||||||||||
Sbjct: 28165 taagtcatttacatgcaaac 28146


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,440,006
Number of Sequences: 3902068
Number of extensions: 3440006
Number of successful extensions: 61113
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61022
Number of HSP's gapped (non-prelim): 91
length of query: 422
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 400
effective length of database: 17,147,199,772
effective search space: 6858879908800
effective search space used: 6858879908800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top