| Clone Name | rbags29f01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF314182.2|AF314182 Triticum aestivum triose phosphate translocator (tpt1) mRNA, complete cds Length = 1484 Score = 182 bits (92), Expect = 2e-43 Identities = 150/170 (88%), Gaps = 7/170 (4%) Strand = Plus / Minus Query: 1 catctgatggaaacaacgggtcttaccatgctgcaatgtagctgtncgacctcacaaggg 60 ||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||| Sbjct: 1394 catctgatggaaacaaccagtcttaccat-ctgcaatgtagctgttcgacctcacaaggg 1336 Query: 61 aacacttttgcagataactgnaaaacaaaaancaaataacgaagaagcgattcgtncatg 120 |||||||| ||||||||||| |||||||| | ||||||||||||||| ||||||| |||| Sbjct: 1335 aacactttagcagataactgaaaaacaaataacaaataacgaagaagagattcgtccatg 1276 Query: 121 tcatctccggggcaatgc------agcaccggnaaccatcagaccatatt 164 || |||||| |||||||| ||| |||| ||||||||||||||||| Sbjct: 1275 tcgtctccgaggcaatgcaactcgagcgccggaaaccatcagaccatatt 1226
>gb|AY028422.1| Oryza sativa triose phosphate/phosphate translocator mRNA, complete cds Length = 1541 Score = 174 bits (88), Expect = 5e-41 Identities = 149/170 (87%), Gaps = 7/170 (4%) Strand = Plus / Minus Query: 1 catctgatggaaacaacgggtcttaccatgctgcaatgtagctgtncgacctcacaaggg 60 ||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||| Sbjct: 1439 catctgatggaaacaaccagtcttaccat-ctgcaatgtagctgttcgacctcacaaggg 1381 Query: 61 aacacttttgcagataactgnaaaacaaaaancaaataacgaagaagcgattcgtncatg 120 |||||||| ||||||| ||| |||||||| | ||||||||||||||| ||||||| |||| Sbjct: 1380 aacactttagcagatagctgaaaaacaaataacaaataacgaagaagagattcgtccatg 1321 Query: 121 tcatctccggggcaatgc------agcaccggnaaccatcagaccatatt 164 || |||||| |||||||| ||| |||| ||||||||||||||||| Sbjct: 1320 tcgtctccgaggcaatgcaactcgagcgccggaaaccatcagaccatatt 1271
>gb|AC109542.6| Rattus norvegicus 1 BAC CH230-270O15 (Children's Hospital Oakland Research Institute) complete sequence Length = 246913 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 caagggaacacttttgcaga 74 |||||||||||||||||||| Sbjct: 126867 caagggaacacttttgcaga 126886
>gb|AC113593.14| Mus musculus chromosome 15, clone RP23-363I24, complete sequence Length = 170090 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 acctcacaagggaacactt 67 ||||||||||||||||||| Sbjct: 106858 acctcacaagggaacactt 106840
>gb|AC147317.3| Pan troglodytes BAC clone RP43-49P4 from chromosome 7, complete sequence Length = 196949 Score = 38.2 bits (19), Expect = 8.1 Identities = 21/22 (95%) Strand = Plus / Plus Query: 82 aaaacaaaaancaaataacgaa 103 |||||||||| ||||||||||| Sbjct: 28989 aaaacaaaaaacaaataacgaa 29010
>gb|AC099850.7| Homo sapiens chromosome 17, clone CTD-2510F5, complete sequence Length = 210344 Score = 38.2 bits (19), Expect = 8.1 Identities = 21/22 (95%) Strand = Plus / Plus Query: 82 aaaacaaaaancaaataacgaa 103 |||||||||| ||||||||||| Sbjct: 120832 aaaacaaaaaacaaataacgaa 120853 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 686,467 Number of Sequences: 3902068 Number of extensions: 686467 Number of successful extensions: 39796 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39785 Number of HSP's gapped (non-prelim): 9 length of query: 167 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 145 effective length of database: 17,147,199,772 effective search space: 2486343966940 effective search space used: 2486343966940 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)