ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags29f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF314182.2|AF314182 Triticum aestivum triose phosphate transl... 182 2e-43
2gb|AY028422.1| Oryza sativa triose phosphate/phosphate transloca... 174 5e-41
3gb|AC109542.6| Rattus norvegicus 1 BAC CH230-270O15 (Children's ... 40 2.1
4gb|AC113593.14| Mus musculus chromosome 15, clone RP23-363I24, c... 38 8.1
5gb|AC147317.3| Pan troglodytes BAC clone RP43-49P4 from chromoso... 38 8.1
6gb|AC099850.7| Homo sapiens chromosome 17, clone CTD-2510F5, com... 38 8.1

>gb|AF314182.2|AF314182 Triticum aestivum triose phosphate translocator (tpt1) mRNA, complete
            cds
          Length = 1484

 Score =  182 bits (92), Expect = 2e-43
 Identities = 150/170 (88%), Gaps = 7/170 (4%)
 Strand = Plus / Minus

                                                                        
Query: 1    catctgatggaaacaacgggtcttaccatgctgcaatgtagctgtncgacctcacaaggg 60
            |||||||||||||||||  |||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 1394 catctgatggaaacaaccagtcttaccat-ctgcaatgtagctgttcgacctcacaaggg 1336

                                                                        
Query: 61   aacacttttgcagataactgnaaaacaaaaancaaataacgaagaagcgattcgtncatg 120
            |||||||| ||||||||||| |||||||| | ||||||||||||||| ||||||| ||||
Sbjct: 1335 aacactttagcagataactgaaaaacaaataacaaataacgaagaagagattcgtccatg 1276

                                                              
Query: 121  tcatctccggggcaatgc------agcaccggnaaccatcagaccatatt 164
            || |||||| ||||||||      ||| |||| |||||||||||||||||
Sbjct: 1275 tcgtctccgaggcaatgcaactcgagcgccggaaaccatcagaccatatt 1226



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>gb|AY028422.1| Oryza sativa triose phosphate/phosphate translocator mRNA, complete
            cds
          Length = 1541

 Score =  174 bits (88), Expect = 5e-41
 Identities = 149/170 (87%), Gaps = 7/170 (4%)
 Strand = Plus / Minus

                                                                        
Query: 1    catctgatggaaacaacgggtcttaccatgctgcaatgtagctgtncgacctcacaaggg 60
            |||||||||||||||||  |||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 1439 catctgatggaaacaaccagtcttaccat-ctgcaatgtagctgttcgacctcacaaggg 1381

                                                                        
Query: 61   aacacttttgcagataactgnaaaacaaaaancaaataacgaagaagcgattcgtncatg 120
            |||||||| ||||||| ||| |||||||| | ||||||||||||||| ||||||| ||||
Sbjct: 1380 aacactttagcagatagctgaaaaacaaataacaaataacgaagaagagattcgtccatg 1321

                                                              
Query: 121  tcatctccggggcaatgc------agcaccggnaaccatcagaccatatt 164
            || |||||| ||||||||      ||| |||| |||||||||||||||||
Sbjct: 1320 tcgtctccgaggcaatgcaactcgagcgccggaaaccatcagaccatatt 1271



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>gb|AC109542.6| Rattus norvegicus 1 BAC CH230-270O15 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 246913

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     caagggaacacttttgcaga 74
              ||||||||||||||||||||
Sbjct: 126867 caagggaacacttttgcaga 126886



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>gb|AC113593.14| Mus musculus chromosome 15, clone RP23-363I24, complete sequence
          Length = 170090

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 49     acctcacaagggaacactt 67
              |||||||||||||||||||
Sbjct: 106858 acctcacaagggaacactt 106840



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>gb|AC147317.3| Pan troglodytes BAC clone RP43-49P4 from chromosome 7, complete
             sequence
          Length = 196949

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 82    aaaacaaaaancaaataacgaa 103
             |||||||||| |||||||||||
Sbjct: 28989 aaaacaaaaaacaaataacgaa 29010



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>gb|AC099850.7| Homo sapiens chromosome 17, clone CTD-2510F5, complete sequence
          Length = 210344

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 82     aaaacaaaaancaaataacgaa 103
              |||||||||| |||||||||||
Sbjct: 120832 aaaacaaaaaacaaataacgaa 120853


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 686,467
Number of Sequences: 3902068
Number of extensions: 686467
Number of successful extensions: 39796
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39785
Number of HSP's gapped (non-prelim): 9
length of query: 167
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 145
effective length of database: 17,147,199,772
effective search space: 2486343966940
effective search space used: 2486343966940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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