ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28p21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1C1QL3_MOUSE (Q9ESN4) Complement C1q-like protein 3 precursor (Gl... 30 2.7
2TALDO_CARMA (P80427) Transaldolase (EC 2.2.1.2) (Fragments) 30 3.6
3RIR2_HELPY (P55983) Ribonucleoside-diphosphate reductase beta su... 30 4.7
4RIR2_HELPJ (Q9ZKC3) Ribonucleoside-diphosphate reductase beta su... 30 4.7
5SYL_RHOPA (Q6ND22) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 29 6.1
6SKEL_DROME (Q9GPJ1) Protein skeletor 29 6.1

>C1QL3_MOUSE (Q9ESN4) Complement C1q-like protein 3 precursor (Gliacolin)|
          Length = 255

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -3

Query: 496 DGNC*WLTLVSVHDFEHSYIGTDVTAHKPNAAQIIILHLAPGTR*YMHRK*SGAHG 329
           DG   W  L   +    S I  D   +   A+  ++LHL PG   Y+      AHG
Sbjct: 183 DGTSMWADLCKNNQVRASAIAQDADQNYDYASNSVVLHLEPGDEVYIKLDGGKAHG 238



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>TALDO_CARMA (P80427) Transaldolase (EC 2.2.1.2) (Fragments)|
          Length = 75

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = -2

Query: 314 PVLVLDS----EVQNSKNIYPIWKSEMKLEHTCDIRAEQL 207
           P L+L +    E+QNSK IY  +K E  +EH  +  A++L
Sbjct: 11  PSLILQAKFLEELQNSKKIYNYYKKESVVEHLSESSAKKL 50



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>RIR2_HELPY (P55983) Ribonucleoside-diphosphate reductase beta subunit (EC|
           1.17.4.1) (Ribonucleotide reductase small subunit)
          Length = 341

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = -2

Query: 326 HTHLPVLVLDSEVQNSKNIYPIWKSEMKLEHTCDIRAE 213
           H+H   ++++S   N++ IY +W+++M+L+   D  A+
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQ 160



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>RIR2_HELPJ (Q9ZKC3) Ribonucleoside-diphosphate reductase beta subunit (EC|
           1.17.4.1) (Ribonucleotide reductase small subunit)
          Length = 341

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = -2

Query: 326 HTHLPVLVLDSEVQNSKNIYPIWKSEMKLEHTCDIRAE 213
           H+H   ++++S   N++ IY +W+++M+L+   D  A+
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQ 160



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>SYL_RHOPA (Q6ND22) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 876

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 125 PRGPDIWNRLKPIDQYMG 178
           P  PD+ NR+ P+DQY+G
Sbjct: 528 PTTPDVVNRMMPVDQYIG 545



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>SKEL_DROME (Q9GPJ1) Protein skeletor|
          Length = 743

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 388 ILLSGQHLVYGPSHLYQCNYAQNHGQIPASAISSYHH 498
           IL +G HL++ P HL++ ++   H   P   +  +HH
Sbjct: 138 ILAAGPHLIHHPPHLHRLHHQPQHA--PHPHVHLHHH 172


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,425,506
Number of Sequences: 219361
Number of extensions: 1624221
Number of successful extensions: 3258
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3258
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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