ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags28p18 |
|---|---|
| Clone Library Name | barley_pub |
>VATH_ARATH (Q9LX65) Probable vacuolar ATP synthase subunit H (EC 3.6.3.14)| (V-ATPase H subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 441 Score = 132 bits (332), Expect = 7e-31 Identities = 60/82 (73%), Positives = 77/82 (93%) Frame = -2 Query: 383 QILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEV 204 QILRVL+T++DTS+D +LAVAC+D+SQF+QYH +GR++VADLKAK+RVMKL+NH+NAEV Sbjct: 359 QILRVLLTILDTSSDPRSLAVACFDISQFIQYHAAGRVIVADLKAKERVMKLINHENAEV 418 Query: 203 RKNSLLCVQRLFLGAKYASFLQ 138 KN++LC+QRL LGAKYASFLQ Sbjct: 419 TKNAILCIQRLLLGAKYASFLQ 440
>VATH_MANSE (Q9U5N0) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 475 Score = 68.2 bits (165), Expect = 2e-11 Identities = 29/73 (39%), Positives = 51/73 (69%) Frame = -2 Query: 383 QILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEV 204 ++LR L+ +++ S D LAVACYD+ ++++++P G+ ++ L K RVM L++HD+ V Sbjct: 376 ELLRTLVHLLEKSHDPVVLAVACYDVGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNV 435 Query: 203 RKNSLLCVQRLFL 165 R +LL VQ+L + Sbjct: 436 RYEALLAVQKLMV 448
>VATH_DROME (Q9V3J1) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 468 Score = 62.4 bits (150), Expect = 9e-10 Identities = 26/73 (35%), Positives = 51/73 (69%) Frame = -2 Query: 383 QILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEV 204 ++LR+L+ +++TS D L+VAC+D+ ++++++P G+ V+ L K VM+ + H++ V Sbjct: 368 ELLRILVHLLETSKDAIILSVACFDIGEYVRHYPRGKHVLEQLGGKQIVMQHLGHEDPNV 427 Query: 203 RKNSLLCVQRLFL 165 R +LL VQ+L + Sbjct: 428 RYEALLAVQKLMV 440
>VATH_PIG (Q9TVC1) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) Length = 483 Score = 61.6 bits (148), Expect = 2e-09 Identities = 26/73 (35%), Positives = 50/73 (68%) Frame = -2 Query: 383 QILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEV 204 ++L++L +++ S D LAVA +D+ ++++++P G+ V+ L K VM M+H++ +V Sbjct: 389 ELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQV 448 Query: 203 RKNSLLCVQRLFL 165 R N+LL VQ+L + Sbjct: 449 RYNALLAVQKLMV 461
>VATH_MOUSE (Q8BVE3) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) Length = 483 Score = 61.6 bits (148), Expect = 2e-09 Identities = 26/73 (35%), Positives = 50/73 (68%) Frame = -2 Query: 383 QILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEV 204 ++L++L +++ S D LAVA +D+ ++++++P G+ V+ L K VM M+H++ +V Sbjct: 389 ELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQV 448 Query: 203 RKNSLLCVQRLFL 165 R N+LL VQ+L + Sbjct: 449 RYNALLAVQKLMV 461
>VATH_HUMAN (Q9UI12) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) (VMA13) (Nef-binding protein 1) (NBP1) Length = 483 Score = 61.6 bits (148), Expect = 2e-09 Identities = 26/73 (35%), Positives = 50/73 (68%) Frame = -2 Query: 383 QILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEV 204 ++L++L +++ S D LAVA +D+ ++++++P G+ V+ L K VM M+H++ +V Sbjct: 389 ELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQV 448 Query: 203 RKNSLLCVQRLFL 165 R N+LL VQ+L + Sbjct: 449 RYNALLAVQKLMV 461
>VATH_BOVIN (O46563) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) Length = 483 Score = 61.6 bits (148), Expect = 2e-09 Identities = 26/73 (35%), Positives = 50/73 (68%) Frame = -2 Query: 383 QILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEV 204 ++L++L +++ S D LAVA +D+ ++++++P G+ V+ L K VM M+H++ +V Sbjct: 389 ELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQV 448 Query: 203 RKNSLLCVQRLFL 165 R N+LL VQ+L + Sbjct: 449 RYNALLAVQKLMV 461
>VATH_SCHPO (O14265) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 54 kDa subunit) Length = 450 Score = 59.7 bits (143), Expect = 6e-09 Identities = 28/70 (40%), Positives = 45/70 (64%) Frame = -2 Query: 380 ILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVR 201 +L+ L ++ + D T+LAVAC+DL +++ +P GR ++ AK R+M LM+H + EVR Sbjct: 369 LLKKLFHIVQYNEDNTSLAVACHDLGAYIRSYPEGRSLIIKYGAKQRIMDLMSHPDPEVR 428 Query: 200 KNSLLCVQRL 171 +L VQ L Sbjct: 429 FEALSTVQLL 438
>VATH1_CAEEL (Q20666) Probable vacuolar ATP synthase subunit H 1 (EC 3.6.3.14)| (V-ATPase H subunit 1) (Vacuolar proton pump H subunit 1) (Vacuolar proton pump subunit SFD 1) Length = 451 Score = 57.0 bits (136), Expect = 4e-08 Identities = 24/73 (32%), Positives = 48/73 (65%) Frame = -2 Query: 383 QILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEV 204 ++L++L+ +++ S D L VA +D+ +F++Y+P G+L V L K+ +M+L+ + V Sbjct: 369 ELLKLLVAMLEKSNDPLVLCVAAHDIGEFVRYYPRGKLKVEQLGGKEAMMRLLTVKDPNV 428 Query: 203 RKNSLLCVQRLFL 165 R ++LL Q+L + Sbjct: 429 RYHALLAAQKLMI 441
>CYB52_SCHPO (Q9USM6) Probable cytochrome b5 2| Length = 129 Score = 30.8 bits (68), Expect = 3.1 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 314 YDLSQFLQYHPSGRLVVADLKAKD 243 YD+S+FL HP G V+ DL +D Sbjct: 29 YDISKFLDAHPGGEEVLVDLAGRD 52
>MIP1_SCHPO (P87141) WD-repeat protein mip1| Length = 1313 Score = 30.4 bits (67), Expect = 4.0 Identities = 20/96 (20%), Positives = 46/96 (47%) Frame = -2 Query: 386 LQILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAE 207 +QIL ++ +S + A+ + LS F + P G+L + + + +N ++ Sbjct: 577 VQILNPNSSIFPSSNISEHRAMCAFILSVFCRGFPQGQLACLNPQVLSHCLSHLNSPDSL 636 Query: 206 VRKNSLLCVQRLFLGAKYASFLQV*DHKVLYLYEVL 99 +R+ + LC+ +L+ A + D+ + L E++ Sbjct: 637 LRQWACLCISQLWENYSEAKWSGTRDNAHVKLAEII 672
>UVRB_PROMT (Q46IE1) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 678 Score = 29.6 bits (65), Expect = 6.8 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Frame = +1 Query: 82 MGFGGSNTSYKYKTLWSYTCRKLAYLAPRKSL----CTQSREFFLTSALSWFMSF 234 +G G+ ++ L + T R LA K+L C + REFF +A+ +F+S+ Sbjct: 37 LGATGTGKTFTIANLIAQTGRPALVLAHNKTLAAQLCNELREFFPDNAVEYFISY 91
>CYB5_TOBAC (P49098) Cytochrome b5| Length = 136 Score = 29.3 bits (64), Expect = 8.9 Identities = 30/103 (29%), Positives = 42/103 (40%) Frame = -2 Query: 314 YDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFLGAKYASFLQV 135 YD+++FL HP G V+ KD D +V +S R L Y + Sbjct: 31 YDVTKFLDDHPGGDEVLLSATGKD-----ATDDFEDVGHSS---SARAMLDEYYVGDI-- 80 Query: 134 *DHKVLYLYEVLDPPNPMPFFQNGETVIENVRPLQFLVQFILL 6 D + PPN P + +T V+ LQFLV I+L Sbjct: 81 -DSATIPTKTKYTPPN-QPHYNQDKTSEFVVKLLQFLVPLIIL 121
>UVRB_CARHZ (Q3AFF4) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 662 Score = 29.3 bits (64), Expect = 8.9 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Frame = +1 Query: 82 MGFGGSNTSYKYKTLWSYTCRKLAYLAPRKSL----CTQSREFFLTSALSWFMSF 234 +G GS ++ + + + +AP K+L C + REFF +A+ +F+S+ Sbjct: 37 LGVTGSGKTFTMANVIANVNKPTLVIAPNKTLAAQLCAEFREFFPENAVEYFVSY 91 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,082,669 Number of Sequences: 219361 Number of extensions: 1526965 Number of successful extensions: 4035 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3914 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4035 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
