ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28p13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468972.1| Oryza sativa (japonica cultivar-group), mRNA 188 1e-44
2dbj|AK068169.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 1e-44
3dbj|AK059181.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 1e-44
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 117 4e-23
5gb|AC145379.2| Oryza sativa chromosome 3 BAC OSJNBa0010N03 genom... 117 4e-23
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
7gb|AC091205.3| Drosophila melanogaster 3L BAC RP98-22N9 (Roswell... 46 0.12
8gb|AC010018.6| Drosophila melanogaster 3L BAC RP98-17M19 (Roswel... 46 0.12
9gb|AE003478.3| Drosophila melanogaster chromosome 3L, section 12... 46 0.12
10gb|AC004356.1|AC004356 Drosophila melanogaster DNA sequence (P1 ... 46 0.12
11ref|NM_103665.2| Arabidopsis thaliana unknown protein AT1G47720 ... 44 0.47
12gb|BT005269.1| Arabidopsis thaliana At1g47720 mRNA, complete cds 44 0.47
13gb|AC012463.4|AC012463 Genomic sequence for Arabidopsis thaliana... 44 0.47
14dbj|AK119114.1| Arabidopsis thaliana At1g47720 mRNA for unknown ... 44 0.47
15gb|AC007519.2|F16N3 Sequence of BAC F16N3 from Arabidopsis thali... 44 0.47
16emb|AL034422.24|HS1141E15 Human DNA sequence from clone RP5-1141... 42 1.9
17dbj|AK153652.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 42 1.9
18gb|AC067971.5|F10K1 Sequence of BAC F10K1 from Arabidopsis thali... 42 1.9
19emb|AL671993.7| Mouse DNA sequence from clone RP23-428E5 on chro... 42 1.9
20gb|AC153076.3| Aotus nancymaae clone CH258-449A9, complete sequence 40 7.4
21gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold 40 7.4
22gb|AC148204.4| Callicebus moloch clone LB5-291I14, complete sequ... 40 7.4
23gb|AC165273.2| Mus musculus BAC clone RP24-267I1 from chromosome... 40 7.4
24gb|AC159638.2| Mus musculus BAC clone RP24-78C16 from chromosome... 40 7.4
25gb|AC130205.3| Mus musculus BAC clone RP24-430C1 from chromosome... 40 7.4
26gb|AC124742.4| Mus musculus BAC clone RP23-210N16 from 12, compl... 40 7.4
27gb|AC159168.3| Callicebus moloch clone LB5-83N20, complete sequence 40 7.4
28emb|AL031906.1|HS90O12 Human DNA sequence from clone RP1-90O12 o... 40 7.4
29emb|X81995.1|NRCATHB N.rustica mRNA for cathepsin B-like cystein... 40 7.4
30gb|AC148489.3| Saimiri boliviensis boliviensis clone CH254-475P8... 40 7.4
31gb|AC146740.3| Callithrix jacchus clone CH259-204H2, complete se... 40 7.4
32gb|AC093320.24| Mus musculus strain C57BL/6J chromosome 1 clone ... 40 7.4
33gb|AF231351.1|AF231351 Nicotiana tabacum plastidic glucose 6-pho... 40 7.4
34emb|CT030176.18| Mouse DNA sequence from clone RP23-142L17 on ch... 40 7.4
35gb|U43145.1|PCU43145 Plasmodium chabaudi repeat organellar prote... 40 7.4
36gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 7.4
37gb|AC102310.11| Mus musculus chromosome 7, clone RP24-426A19, co... 40 7.4
38gb|AC160530.8| Mus musculus chromosome 1, clone RP24-225F15, com... 40 7.4
39gb|DP000019.1| Callicebus moloch target 1 genomic scaffold 40 7.4
40emb|AL831772.3| Mouse DNA sequence from clone RP23-320K18 on chr... 40 7.4
41emb|AL671671.5| Mouse DNA sequence from clone RP23-419D6 on chro... 40 7.4 
>ref|XM_468972.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1206

 Score =  188 bits (95), Expect = 1e-44
 Identities = 221/263 (84%)
 Strand = Plus / Minus

                                                                       
Query: 253 tcagatgtcatgaagtcgtcggcatacatgtaggagactggtttcctctgcttgtcctgc 312
           |||| |||||||||||| || ||||||||  |||  ||||||||||| |  ||| | || 
Sbjct: 952 tcaggtgtcatgaagtcatcagcatacataaaggcaactggtttcctatcattgccttga 893

                                                                       
Query: 313 agggaacccatcctcgagtccaagatcgccagctgggagacgacccagttggggttgttc 372
           || |||||||| ||||||||||  || |||| ||||||||  ||||| || || ||||||
Sbjct: 892 agagaacccattctcgagtccagaattgccaactgggagataacccaatttggattgttc 833

                                                                       
Query: 373 ctcccctcaacccacagcgcctcaccggtgctcttgtgcttgaagtctggataccttggg 432
           ||||| ||||||||||  || |||||||||   ||||||||||||||||||||||| |||
Sbjct: 832 ctcccatcaacccacaatgcttcaccggtgtgtttgtgcttgaagtctggatacctcggg 773

                                                                       
Query: 433 ttcttcttatctttcctgttatcccaccagtcaagaggattagcgaagaatgcttgccac 492
           |||||||||| | ||||||||||||||||||||| ||||||||| ||||| |||||||||
Sbjct: 772 ttcttcttatttgtcctgttatcccaccagtcaaaaggattagcaaagaaggcttgccac 713

                                  
Query: 493 agtgcttcagttgaacgagagga 515
           |    |||||||||||| |||||
Sbjct: 712 aactgttcagttgaacgggagga 690
to top
>dbj|AK068169.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129H11, full
           insert sequence
          Length = 1208

 Score =  188 bits (95), Expect = 1e-44
 Identities = 221/263 (84%)
 Strand = Plus / Minus

                                                                       
Query: 253 tcagatgtcatgaagtcgtcggcatacatgtaggagactggtttcctctgcttgtcctgc 312
           |||| |||||||||||| || ||||||||  |||  ||||||||||| |  ||| | || 
Sbjct: 954 tcaggtgtcatgaagtcatcagcatacataaaggcaactggtttcctatcattgccttga 895

                                                                       
Query: 313 agggaacccatcctcgagtccaagatcgccagctgggagacgacccagttggggttgttc 372
           || |||||||| ||||||||||  || |||| ||||||||  ||||| || || ||||||
Sbjct: 894 agagaacccattctcgagtccagaattgccaactgggagataacccaatttggattgttc 835

                                                                       
Query: 373 ctcccctcaacccacagcgcctcaccggtgctcttgtgcttgaagtctggataccttggg 432
           ||||| ||||||||||  || |||||||||   ||||||||||||||||||||||| |||
Sbjct: 834 ctcccatcaacccacaatgcttcaccggtgtgtttgtgcttgaagtctggatacctcggg 775

                                                                       
Query: 433 ttcttcttatctttcctgttatcccaccagtcaagaggattagcgaagaatgcttgccac 492
           |||||||||| | ||||||||||||||||||||| ||||||||| ||||| |||||||||
Sbjct: 774 ttcttcttatttgtcctgttatcccaccagtcaaaaggattagcaaagaaggcttgccac 715

                                  
Query: 493 agtgcttcagttgaacgagagga 515
           |    |||||||||||| |||||
Sbjct: 714 aactgttcagttgaacgggagga 692
to top
>dbj|AK059181.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-G01, full
           insert sequence
          Length = 1323

 Score =  188 bits (95), Expect = 1e-44
 Identities = 221/263 (84%)
 Strand = Plus / Minus

                                                                       
Query: 253 tcagatgtcatgaagtcgtcggcatacatgtaggagactggtttcctctgcttgtcctgc 312
           |||| |||||||||||| || ||||||||  |||  ||||||||||| |  ||| | || 
Sbjct: 938 tcaggtgtcatgaagtcatcagcatacataaaggcaactggtttcctatcattgccttga 879

                                                                       
Query: 313 agggaacccatcctcgagtccaagatcgccagctgggagacgacccagttggggttgttc 372
           || |||||||| ||||||||||  || |||| ||||||||  ||||| || || ||||||
Sbjct: 878 agagaacccattctcgagtccagaattgccaactgggagataacccaatttggattgttc 819

                                                                       
Query: 373 ctcccctcaacccacagcgcctcaccggtgctcttgtgcttgaagtctggataccttggg 432
           ||||| ||||||||||  || |||||||||   ||||||||||||||||||||||| |||
Sbjct: 818 ctcccatcaacccacaatgcttcaccggtgtgtttgtgcttgaagtctggatacctcggg 759

                                                                       
Query: 433 ttcttcttatctttcctgttatcccaccagtcaagaggattagcgaagaatgcttgccac 492
           |||||||||| | ||||||||||||||||||||| ||||||||| ||||| |||||||||
Sbjct: 758 ttcttcttatttgtcctgttatcccaccagtcaaaaggattagcaaagaaggcttgccac 699

                                  
Query: 493 agtgcttcagttgaacgagagga 515
           |    |||||||||||| |||||
Sbjct: 698 aactgttcagttgaacgggagga 676
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  117 bits (59), Expect = 4e-23
 Identities = 155/187 (82%)
 Strand = Plus / Plus

                                                                            
Query: 253      tcagatgtcatgaagtcgtcggcatacatgtaggagactggtttcctctgcttgtcctgc 312
                |||| |||||||||||| || ||||||||  |||  ||||||||||| |  ||| | || 
Sbjct: 24103068 tcaggtgtcatgaagtcatcagcatacataaaggcaactggtttcctatcattgccttga 24103127

                                                                            
Query: 313      agggaacccatcctcgagtccaagatcgccagctgggagacgacccagttggggttgttc 372
                || |||||||| ||||||||||  || |||| ||||||||  ||||| || || ||||||
Sbjct: 24103128 agagaacccattctcgagtccagaattgccaactgggagataacccaatttggattgttc 24103187

                                                                            
Query: 373      ctcccctcaacccacagcgcctcaccggtgctcttgtgcttgaagtctggataccttggg 432
                ||||| ||||||||||  || |||||||||   ||||||||||||||||||||||| |||
Sbjct: 24103188 ctcccatcaacccacaatgcttcaccggtgtgtttgtgcttgaagtctggatacctcggg 24103247

                       
Query: 433      ttcttct 439
                |||||||
Sbjct: 24103248 ttcttct 24103254



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                            
Query: 446      tcctgttatcccaccagtcaagaggattagcgaagaatgcttgccacagtgcttcagttg 505
                ||||||||||||||||||||| ||||||||| ||||| ||||||||||    ||||||||
Sbjct: 24104669 tcctgttatcccaccagtcaaaaggattagcaaagaaggcttgccacaactgttcagttg 24104728

                          
Query: 506      aacgagagga 515
                |||| |||||
Sbjct: 24104729 aacgggagga 24104738
to top
>gb|AC145379.2| Oryza sativa chromosome 3 BAC OSJNBa0010N03 genomic sequence, complete
              sequence
          Length = 140980

 Score =  117 bits (59), Expect = 4e-23
 Identities = 155/187 (82%)
 Strand = Plus / Minus

                                                                          
Query: 253    tcagatgtcatgaagtcgtcggcatacatgtaggagactggtttcctctgcttgtcctgc 312
              |||| |||||||||||| || ||||||||  |||  ||||||||||| |  ||| | || 
Sbjct: 120764 tcaggtgtcatgaagtcatcagcatacataaaggcaactggtttcctatcattgccttga 120705

                                                                          
Query: 313    agggaacccatcctcgagtccaagatcgccagctgggagacgacccagttggggttgttc 372
              || |||||||| ||||||||||  || |||| ||||||||  ||||| || || ||||||
Sbjct: 120704 agagaacccattctcgagtccagaattgccaactgggagataacccaatttggattgttc 120645

                                                                          
Query: 373    ctcccctcaacccacagcgcctcaccggtgctcttgtgcttgaagtctggataccttggg 432
              ||||| ||||||||||  || |||||||||   ||||||||||||||||||||||| |||
Sbjct: 120644 ctcccatcaacccacaatgcttcaccggtgtgtttgtgcttgaagtctggatacctcggg 120585

                     
Query: 433    ttcttct 439
              |||||||
Sbjct: 120584 ttcttct 120578



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                          
Query: 446    tcctgttatcccaccagtcaagaggattagcgaagaatgcttgccacagtgcttcagttg 505
              ||||||||||||||||||||| ||||||||| ||||| ||||||||||    ||||||||
Sbjct: 119163 tcctgttatcccaccagtcaaaaggattagcaaagaaggcttgccacaactgttcagttg 119104

                        
Query: 506    aacgagagga 515
              |||| |||||
Sbjct: 119103 aacgggagga 119094
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  117 bits (59), Expect = 4e-23
 Identities = 155/187 (82%)
 Strand = Plus / Plus

                                                                            
Query: 253      tcagatgtcatgaagtcgtcggcatacatgtaggagactggtttcctctgcttgtcctgc 312
                |||| |||||||||||| || ||||||||  |||  ||||||||||| |  ||| | || 
Sbjct: 24019355 tcaggtgtcatgaagtcatcagcatacataaaggcaactggtttcctatcattgccttga 24019414

                                                                            
Query: 313      agggaacccatcctcgagtccaagatcgccagctgggagacgacccagttggggttgttc 372
                || |||||||| ||||||||||  || |||| ||||||||  ||||| || || ||||||
Sbjct: 24019415 agagaacccattctcgagtccagaattgccaactgggagataacccaatttggattgttc 24019474

                                                                            
Query: 373      ctcccctcaacccacagcgcctcaccggtgctcttgtgcttgaagtctggataccttggg 432
                ||||| ||||||||||  || |||||||||   ||||||||||||||||||||||| |||
Sbjct: 24019475 ctcccatcaacccacaatgcttcaccggtgtgtttgtgcttgaagtctggatacctcggg 24019534

                       
Query: 433      ttcttct 439
                |||||||
Sbjct: 24019535 ttcttct 24019541



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                            
Query: 446      tcctgttatcccaccagtcaagaggattagcgaagaatgcttgccacagtgcttcagttg 505
                ||||||||||||||||||||| ||||||||| ||||| ||||||||||    ||||||||
Sbjct: 24020956 tcctgttatcccaccagtcaaaaggattagcaaagaaggcttgccacaactgttcagttg 24021015

                          
Query: 506      aacgagagga 515
                |||| |||||
Sbjct: 24021016 aacgggagga 24021025
to top
>gb|AC091205.3| Drosophila melanogaster 3L BAC RP98-22N9 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 170836

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 418    tctggataccttgggttcttctt 440
              |||||||||||||||||||||||
Sbjct: 137195 tctggataccttgggttcttctt 137217
to top
>gb|AC010018.6| Drosophila melanogaster 3L BAC RP98-17M19 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 172284

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 418    tctggataccttgggttcttctt 440
              |||||||||||||||||||||||
Sbjct: 163210 tctggataccttgggttcttctt 163188
to top
>gb|AE003478.3| Drosophila melanogaster chromosome 3L, section 12 of 83 of the complete
             sequence
          Length = 317354

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 418   tctggataccttgggttcttctt 440
             |||||||||||||||||||||||
Sbjct: 74468 tctggataccttgggttcttctt 74446
to top
>gb|AC004356.1|AC004356 Drosophila melanogaster DNA sequence (P1 DS01105 (D259)), complete
             sequence
          Length = 71343

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 418   tctggataccttgggttcttctt 440
             |||||||||||||||||||||||
Sbjct: 18167 tctggataccttgggttcttctt 18145
to top
>ref|NM_103665.2| Arabidopsis thaliana unknown protein AT1G47720 mRNA, complete cds
          Length = 969

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 428 ttgggttcttcttatctttcctgttatcccacca 461
           ||||||||||||||| | ||||||| ||||||||
Sbjct: 652 ttgggttcttcttatttctcctgttgtcccacca 619
to top
>gb|BT005269.1| Arabidopsis thaliana At1g47720 mRNA, complete cds
          Length = 786

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 428 ttgggttcttcttatctttcctgttatcccacca 461
           ||||||||||||||| | ||||||| ||||||||
Sbjct: 628 ttgggttcttcttatttctcctgttgtcccacca 595
to top
>gb|AC012463.4|AC012463 Genomic sequence for Arabidopsis thaliana BAC T2E6 from chromosome I,
             complete sequence
          Length = 95816

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 428   ttgggttcttcttatctttcctgttatcccacca 461
             ||||||||||||||| | ||||||| ||||||||
Sbjct: 81727 ttgggttcttcttatttctcctgttgtcccacca 81694
to top
>dbj|AK119114.1| Arabidopsis thaliana At1g47720 mRNA for unknown protein, complete
           cds, clone: RAFL21-47-D06
          Length = 969

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 428 ttgggttcttcttatctttcctgttatcccacca 461
           ||||||||||||||| | ||||||| ||||||||
Sbjct: 652 ttgggttcttcttatttctcctgttgtcccacca 619
to top
>gb|AC007519.2|F16N3 Sequence of BAC F16N3 from Arabidopsis thaliana chromosome 1,
            complete sequence
          Length = 171769

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 428  ttgggttcttcttatctttcctgttatcccacca 461
            ||||||||||||||| | ||||||| ||||||||
Sbjct: 4578 ttgggttcttcttatttctcctgttgtcccacca 4545
to top
>emb|AL034422.24|HS1141E15 Human DNA sequence from clone RP5-1141E15 on chromosome 20q11.23-12
             Contains the 5' end of GHRH gene for growth hormone
             releasing hormone, the MANBAL gene for mannosidase beta A
             lysosomal-like, the 5' end of the SRC gene for v-src avian
             sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog and a
             CpG island, complete sequence
          Length = 113681

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 367   ttgttcctcccctcaacccac 387
             |||||||||||||||||||||
Sbjct: 12770 ttgttcctcccctcaacccac 12750
to top
>dbj|AK153652.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630033O06 product:unclassifiable, full
            insert sequence
          Length = 1513

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 447  cctgttatcccaccagtcaagagga 471
            |||||||||||| ||||||||||||
Sbjct: 1032 cctgttatcccagcagtcaagagga 1056
to top
>gb|AC067971.5|F10K1 Sequence of BAC F10K1 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 111464

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 430   gggttcttcttatctttcctg 450
             |||||||||||||||||||||
Sbjct: 29956 gggttcttcttatctttcctg 29936
to top
>emb|AL671993.7| Mouse DNA sequence from clone RP23-428E5 on chromosome X, complete
              sequence
          Length = 194106

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 447    cctgttatcccaccagtcaagagga 471
              |||||||||||| ||||||||||||
Sbjct: 112818 cctgttatcccagcagtcaagagga 112794
to top
>gb|AC153076.3| Aotus nancymaae clone CH258-449A9, complete sequence
          Length = 184072

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 433    ttcttcttatctttcctgtt 452
              ||||||||||||||||||||
Sbjct: 112919 ttcttcttatctttcctgtt 112900
to top
>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold
          Length = 1952403

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 433    ttcttcttatctttcctgtt 452
              ||||||||||||||||||||
Sbjct: 205217 ttcttcttatctttcctgtt 205198
to top
>gb|AC148204.4| Callicebus moloch clone LB5-291I14, complete sequence
          Length = 83131

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 433   ttcttcttatctttcctgtt 452
             ||||||||||||||||||||
Sbjct: 53314 ttcttcttatctttcctgtt 53295
to top
>gb|AC165273.2| Mus musculus BAC clone RP24-267I1 from chromosome 13, complete sequence
          Length = 190600

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    ggcatacatgtaggagactg 292
              ||||||||||||||||||||
Sbjct: 114394 ggcatacatgtaggagactg 114413
to top
>gb|AC159638.2| Mus musculus BAC clone RP24-78C16 from chromosome 12, complete sequence
          Length = 190196

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 485    cttgccacagtgcttcagttgaac 508
              ||||||||||| ||||||||||||
Sbjct: 143657 cttgccacagtccttcagttgaac 143634
to top
>gb|AC130205.3| Mus musculus BAC clone RP24-430C1 from chromosome 1, complete sequence
          Length = 165927

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 205    atcagaagcttcctgactcc 224
              ||||||||||||||||||||
Sbjct: 135472 atcagaagcttcctgactcc 135453
to top
>gb|AC124742.4| Mus musculus BAC clone RP23-210N16 from 12, complete sequence
          Length = 208101

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   ggcatacatgtaggagactg 292
             ||||||||||||||||||||
Sbjct: 89505 ggcatacatgtaggagactg 89524
to top
>gb|AC159168.3| Callicebus moloch clone LB5-83N20, complete sequence
          Length = 182435

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 433    ttcttcttatctttcctgtt 452
              ||||||||||||||||||||
Sbjct: 181190 ttcttcttatctttcctgtt 181171
to top
>emb|AL031906.1|HS90O12 Human DNA sequence from clone RP1-90O12 on chromosome 6p24.1-25.1,
             complete sequence
          Length = 99035

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 497   cttcagttgaacgagaggaa 516
             ||||||||||||||||||||
Sbjct: 26955 cttcagttgaacgagaggaa 26936
to top
>emb|X81995.1|NRCATHB N.rustica mRNA for cathepsin B-like cysteine proteinase
          Length = 1331

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 167  tgataataagatagtggaac 186
            ||||||||||||||||||||
Sbjct: 1212 tgataataagatagtggaac 1193
to top
>gb|AC148489.3| Saimiri boliviensis boliviensis clone CH254-475P8, complete sequence
          Length = 183300

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 433    ttcttcttatctttcctgtt 452
              ||||||||||||||||||||
Sbjct: 133444 ttcttcttatctttcctgtt 133425
to top
>gb|AC146740.3| Callithrix jacchus clone CH259-204H2, complete sequence
          Length = 224361

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 433    ttcttcttatctttcctgtt 452
              ||||||||||||||||||||
Sbjct: 205217 ttcttcttatctttcctgtt 205198
to top
>gb|AC093320.24| Mus musculus strain C57BL/6J chromosome 1 clone rp23-45n11, complete
              sequence
          Length = 245536

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 344    gctgggagacgacccagttg 363
              ||||||||||||||||||||
Sbjct: 211173 gctgggagacgacccagttg 211192
to top
>gb|AF231351.1|AF231351 Nicotiana tabacum plastidic glucose 6-phosphate dehydrogenase
           (G6PDHP2) gene, complete cds; nuclear gene for plastid
           product
          Length = 7085

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 36  tggtcatgttcataatttgtcact 59
           |||| |||||||||||||||||||
Sbjct: 595 tggttatgttcataatttgtcact 572
to top
>emb|CT030176.18| Mouse DNA sequence from clone RP23-142L17 on chromosome 13, complete
             sequence
          Length = 218075

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   ggcatacatgtaggagactg 292
             ||||||||||||||||||||
Sbjct: 36593 ggcatacatgtaggagactg 36612
to top
>gb|U43145.1|PCU43145 Plasmodium chabaudi repeat organellar protein gene, complete cds
          Length = 9985

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 166  atgataataagatagtggaa 185
            ||||||||||||||||||||
Sbjct: 6398 atgataataagatagtggaa 6417
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 326     tcgagtccaagatcgccagc 345
               ||||||||||||||||||||
Sbjct: 2114431 tcgagtccaagatcgccagc 2114450
to top
>gb|AC102310.11| Mus musculus chromosome 7, clone RP24-426A19, complete sequence
          Length = 180370

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 435   cttcttatctttcctgttat 454
             ||||||||||||||||||||
Sbjct: 93649 cttcttatctttcctgttat 93630
to top
>gb|AC160530.8| Mus musculus chromosome 1, clone RP24-225F15, complete sequence
          Length = 170817

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 344  gctgggagacgacccagttg 363
            ||||||||||||||||||||
Sbjct: 7913 gctgggagacgacccagttg 7932
to top
>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold
          Length = 2105003

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 433    ttcttcttatctttcctgtt 452
              ||||||||||||||||||||
Sbjct: 181214 ttcttcttatctttcctgtt 181195
to top
>emb|AL831772.3| Mouse DNA sequence from clone RP23-320K18 on chromosome 4, complete
            sequence
          Length = 15160

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 447  cctgttatcccaccagtcaagagg 470
            ||||| ||||||||||||||||||
Sbjct: 1348 cctgtaatcccaccagtcaagagg 1371
to top
>emb|AL671671.5| Mouse DNA sequence from clone RP23-419D6 on chromosome 4, complete
              sequence
          Length = 102298

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 447    cctgttatcccaccagtcaagagg 470
              ||||| ||||||||||||||||||
Sbjct: 101646 cctgtaatcccaccagtcaagagg 101669


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,000,909
Number of Sequences: 3902068
Number of extensions: 4000909
Number of successful extensions: 71277
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71154
Number of HSP's gapped (non-prelim): 111
length of query: 543
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 520
effective length of database: 17,143,297,704
effective search space: 8914514806080
effective search space used: 8914514806080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top