>ICT1_MOUSE (Q8R035) Immature colon carcinoma transcript 1 protein precursor|
          Length = 206

 Score = 36.2 bits (82), Expect = 0.10
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +2

Query: 209 WTIKEACAEESSYTIRDDCSVALCKMCSRGNQGQQSLGVISSQVE*VRFKFQSEEWVNE- 385
           W + E   + SSY   D  S++ C+       G Q++  ++S+ E VRF   S +W+ E 
Sbjct: 59  WKVPEHAKQASSYIPLDRLSISYCR---SSGPGGQNVNKVNSKAE-VRFHLASADWIEEP 114

Query: 386 -QFTIWLCHSKEKGKIRAAG 442
            +  I L H   K KI  AG
Sbjct: 115 VRQKIALTH---KNKINKAG 131

>SEM4C_MOUSE (Q64151) Semaphorin-4C precursor (Semaphorin I) (Sema I)|
           (Semaphorin C-like 1) (M-Sema F)
          Length = 834

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -2

Query: 261 SSRMVYELSSAQASLMVQHSHDSPSNAMCDQ--LRFIRETNRSVVIGSGLSQVFPVFLMT 88
           +SR V   S    S +VQH  +  ++ MC+Q  ++ +R   +++ + SG   V P  L +
Sbjct: 523 TSRCVATTSGRSGSFLVQHVANLDTSKMCNQYGIKKVRSIPKNITVVSGTDLVLPCHLSS 582

Query: 87  ALGN 76
            L +
Sbjct: 583 NLAH 586

>MCPH1_HYLLA (P61592) Microcephalin|
          Length = 840

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -2

Query: 234 SAQASLMVQHSHDSPSNAMCD-QLRFIRET 148
           S  +S M+Q SHD+PSN++C+  L   R+T
Sbjct: 191 SPSSSQMIQQSHDNPSNSLCEAPLNISRDT 220

>MCPH1_PANTR (P61593) Microcephalin|
          Length = 835

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -2

Query: 234 SAQASLMVQHSHDSPSNAMCD-QLRFIRET 148
           S  +S M+Q SHD+PSN++C+  L   R+T
Sbjct: 191 SPTSSQMIQQSHDNPSNSLCEAPLNISRDT 220

>MCPH1_HUMAN (Q8NEM0) Microcephalin|
          Length = 835

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -2

Query: 234 SAQASLMVQHSHDSPSNAMCD-QLRFIRET 148
           S  +S M+Q SHD+PSN++C+  L   R+T
Sbjct: 191 SPTSSQMIQQSHDNPSNSLCEAPLNISRDT 220

>MCPH1_PONPY (P61594) Microcephalin|
          Length = 839

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 291 EHILQRATEQSSRMVYELSSAQASLMVQHSHDSPSNAMCD 172
           E+ LQ   E+   +     S  +S M+Q SHD+PSN++C+
Sbjct: 177 ENRLQEMKEKRENL-----SPTSSQMIQQSHDNPSNSLCE 211

>MCPH1_MACFA (Q5IFK1) Microcephalin|
          Length = 842

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -2

Query: 234 SAQASLMVQHSHDSPSNAMCD 172
           S  +S M+Q SHD+PSN++C+
Sbjct: 191 SPTSSQMIQQSHDNPSNSLCE 211

>MCPH1_COLGU (P61590) Microcephalin|
          Length = 841

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -2

Query: 234 SAQASLMVQHSHDSPSNAMCD 172
           S  +S M+Q SHD+PSN++C+
Sbjct: 191 SPTSSQMIQQSHDNPSNSLCE 211

>ATRX_PONPY (Q7YQM3) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent|
           helicase ATRX) (X-linked helicase II) (X-linked nuclear
           protein) (XNP)
          Length = 2492

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
 Frame = +2

Query: 188 DGESWEC-WTIKEACAEESSYTIRDDCSVALCKMCSRGNQGQQSLGVISSQVE*VRFKFQ 364
           DG   +C W     CAE  +    D C  A CK C   N G++ L  I  +         
Sbjct: 214 DGMDEQCRW-----CAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDE--------- 259

Query: 365 SEEWVNEQFTIWLCH 409
                N Q+  ++CH
Sbjct: 260 -----NNQWYCYICH 269

>ATRX_PANTR (Q7YQM4) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent|
           helicase ATRX) (X-linked helicase II) (X-linked nuclear
           protein) (XNP)
          Length = 2492

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
 Frame = +2

Query: 188 DGESWEC-WTIKEACAEESSYTIRDDCSVALCKMCSRGNQGQQSLGVISSQVE*VRFKFQ 364
           DG   +C W     CAE  +    D C  A CK C   N G++ L  I  +         
Sbjct: 214 DGMDEQCRW-----CAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDE--------- 259

Query: 365 SEEWVNEQFTIWLCH 409
                N Q+  ++CH
Sbjct: 260 -----NNQWYCYICH 269

>ATRX_HUMAN (P46100) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent|
           helicase ATRX) (X-linked helicase II) (X-linked nuclear
           protein) (XNP) (Znf-HX)
          Length = 2492

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
 Frame = +2

Query: 188 DGESWEC-WTIKEACAEESSYTIRDDCSVALCKMCSRGNQGQQSLGVISSQVE*VRFKFQ 364
           DG   +C W     CAE  +    D C  A CK C   N G++ L  I  +         
Sbjct: 214 DGMDEQCRW-----CAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDE--------- 259

Query: 365 SEEWVNEQFTIWLCH 409
                N Q+  ++CH
Sbjct: 260 -----NNQWYCYICH 269

>MCPH1_GORGO (P61591) Microcephalin|
          Length = 835

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -2

Query: 234 SAQASLMVQHSHDSPSNAMCD-QLRFIRET 148
           S  +S ++Q SHD+PSN++C+  L   R+T
Sbjct: 191 SPTSSQLIQQSHDNPSNSLCEAPLNISRDT 220


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,615,970
Number of Sequences: 219361
Number of extensions: 2355775
Number of successful extensions: 5062
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5060
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7422931207
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)