ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags28p05 |
|---|---|
| Clone Library Name | barley_pub |
>NKX25_CHICK (Q90788) Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E)| (cNKX-2.5) Length = 294 Score = 31.6 bits (70), Expect = 1.1 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Frame = +2 Query: 179 PCTGISMAYSLPRNISVQTTSVHA-PIH--**RPCCSTTYEYEYERTQQPRASVKGDQLL 349 PC G S YS P N+S+ S +A P + P C+ Y Y Q + S G+ + Sbjct: 205 PCLGESSPYSSPYNVSINPYSYNAYPAYPNYNSPACNANYNCSYPAVQPVQPSAAGNNFM 264
>Y938_MYCTU (P71571) Putative DNA ligase-like protein Rv0938/MT0965| Length = 759 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%) Frame = +2 Query: 107 AFPVTXXXXXXXXXXXXVRRPK---KLPCTGISMAYSLPRNISVQTTSVHAPIH 259 A PVT RRP +L C G+ +++++P+N+ T+ H IH Sbjct: 316 AKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSVNHLAIH 369
>MAP1A_RAT (P34926) Microtubule-associated protein 1A (MAP 1A) [Contains: MAP1| light chain LC2] Length = 2774 Score = 29.6 bits (65), Expect = 4.0 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 7/67 (10%) Frame = +3 Query: 132 PCRPIEIYPSVVPKSCPARGFPW-------PIHCRATFRCKQPPSTRLSTDDDHVAQLRT 290 P +++ P+ P PA G P P T + PS LS DH A Sbjct: 2279 PSASLDLAPAPAPAPAPAPGLPGDLGDGTLPCRPECTGELTKKPSPFLSPSGDHEANGPG 2338 Query: 291 STSTNEP 311 TS N P Sbjct: 2339 ETSLNPP 2345
>IDI_CITFR (Q7X5H2) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) (IPP:DMAPP isomerase) Length = 182 Score = 29.3 bits (64), Expect = 5.2 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%) Frame = -1 Query: 339 SPLTLARGCWVRSYSYSYVVEQHGRHQ--WIGAWTEVVC 229 +PL A CW+ + +V + H+ W G WT VC Sbjct: 29 TPLHSAFSCWIFNEQGQLLVTRRSLHKKAWPGVWTNSVC 67
>PTH_FRATT (Q5NGZ6) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)| Length = 191 Score = 28.9 bits (63), Expect = 6.8 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%) Frame = +1 Query: 109 VSRDALSFPAGRLRSIRPSSQKAALHGDFHGLFIAAQHFGANN-LRPR---AYPLMTTML 276 V D L +G +R +K HG +GL QH G N+ LR R +P + + Sbjct: 92 VVHDELDIDSGEIRL-----KKGGGHGGHNGLRSINQHLGTNDYLRLRIGIGHPGHKSKV 146 Query: 277 LNYVRVRVRTNPAAARERQRRSAPRDG 357 NY V +NP+ A+++ SA +G Sbjct: 147 ANY----VLSNPSIAQKKDIDSAIDNG 169
>MORG1_XENTR (Q5XGI5) Mitogen-activated protein kinase organizer 1 (MAPK| organizer 1) Length = 314 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/46 (34%), Positives = 19/46 (41%) Frame = -3 Query: 193 NPRAGQLFGTTDG*ISIGRQGKRERHGKRTVTVAYTYSNSKQCSCS 56 NP G L T G HG + A +Y NS+ CSCS Sbjct: 53 NPHKGTLLKTYSG------------HGYEVLDTAGSYDNSQMCSCS 86
>SAT_SYNY3 (P74241) Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate| adenylate transferase) (SAT) (ATP-sulfurylase) Length = 390 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +1 Query: 235 NLRPRAYPLMTTMLLNYVRVRVRTNPAAARERQRRSAPRDGGNHELLIRR-GCTMQMQGQ 411 ++R R Y +M RV + NP+A R + PR+ H L+ + GCT + G+ Sbjct: 238 DVRMRCYEIMVDNYFPKERVILGINPSA----MRYAGPREAIFHALIRKNYGCTHFIVGR 293 Query: 412 GHA 420 HA Sbjct: 294 DHA 296
>X92_TRYBB (P12304) Protein X92| Length = 549 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = +2 Query: 26 TCTETKRQRAATATLFAVAVCVCYCYRAF 112 TC++ K A + V VCVC C AF Sbjct: 479 TCSQLKLSPATCLHILRVCVCVCVCVFAF 507
>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC 3.4.22.-)| (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/43 (30%), Positives = 18/43 (41%) Frame = +3 Query: 153 YPSVVPKSCPARGFPWPIHCRATFRCKQPPSTRLSTDDDHVAQ 281 YP + C A+ P +AT +C T+D H AQ Sbjct: 1769 YPEIFAGMCTAQSLSVPAFLKATLKCVDAALGPRDTEDCHAAQ 1811
>POLN_RUBVM (Q86500) Nonstructural polyprotein [Contains: Protease (EC 3.4.22.-)| (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/43 (30%), Positives = 18/43 (41%) Frame = +3 Query: 153 YPSVVPKSCPARGFPWPIHCRATFRCKQPPSTRLSTDDDHVAQ 281 YP + C A+ P +AT +C T+D H AQ Sbjct: 1769 YPEIFAGMCTAQSLSVPAFLKATLKCVDAALGPRDTEDCHAAQ 1811
>IDI_SALTY (Q8ZM82) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) (IPP:DMAPP isomerase) Length = 181 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Frame = -1 Query: 339 SPLTLARGCWVRSYSYSYVVEQHG--RHQWIGAWTEVVCTEMLRG 211 +PL LA CW+ + +V + + W G WT VC +G Sbjct: 29 TPLHLAFSCWLFNEDGQLLVTRRSLSKKAWPGVWTNSVCGHPQQG 73
>IDI_SALTI (Q8Z3X9) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) (IPP:DMAPP isomerase) Length = 181 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Frame = -1 Query: 339 SPLTLARGCWVRSYSYSYVVEQHG--RHQWIGAWTEVVCTEMLRG 211 +PL LA CW+ + +V + + W G WT VC +G Sbjct: 29 TPLHLAFSCWLFNEDGQLLVTRRSLSKKAWPGVWTNSVCGHPQQG 73
>IDI_SALPA (Q5PL31) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) (IPP:DMAPP isomerase) Length = 181 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Frame = -1 Query: 339 SPLTLARGCWVRSYSYSYVVEQHG--RHQWIGAWTEVVCTEMLRG 211 +PL LA CW+ + +V + + W G WT VC +G Sbjct: 29 TPLHLAFSCWLFNEDGQLLVTRRSLSKKAWPGVWTNSVCGHPQQG 73
>IDI_SALCH (Q57K77) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) (IPP:DMAPP isomerase) Length = 181 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Frame = -1 Query: 339 SPLTLARGCWVRSYSYSYVVEQHG--RHQWIGAWTEVVCTEMLRG 211 +PL LA CW+ + +V + + W G WT VC +G Sbjct: 29 TPLHLAFSCWLFNEDGQLLVTRRSLSKKAWPGVWTNSVCGHPQQG 73 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,948,200 Number of Sequences: 219361 Number of extensions: 1166820 Number of successful extensions: 3521 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3390 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3510 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
