ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags29e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY145451.1| Hordeum vulgare actin mRNA, complete cds 222 3e-55
2gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14... 186 1e-44
3gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156... 163 2e-37
4ref|NM_031912.3| Homo sapiens synaptotagmin XV (SYT15), transcri... 38 8.0
5ref|NM_181519.2| Homo sapiens synaptotagmin XV (SYT15), transcri... 38 8.0
6gb|AC114643.9| Mus musculus chromosome 6, clone RP24-127D6, comp... 38 8.0
7gb|AC068241.7| Mus musculus chromosome 10, clone RP23-48L1, comp... 38 8.0
8gb|AC142499.9| Mus musculus strain C57BL/6J clone rp23-333m15, c... 38 8.0
9gb|AC144592.26| Medicago truncatula clone mth2-23m13, complete s... 38 8.0
10emb|CR391913.7| Zebrafish DNA sequence from clone DKEY-118P6 in ... 38 8.0
11emb|AL117383.19|HSJ885A10 Human DNA sequence from clone RP5-885A... 38 8.0
12emb|AJ303363.1|HSA303363 Homo sapiens partial mRNA for chr10 syn... 38 8.0
13emb|BX927098.24| Zebrafish DNA sequence from clone DKEY-228D14 i... 38 8.0
14dbj|AK127436.1| Homo sapiens cDNA FLJ45528 fis, clone BRTHA20272... 38 8.0
15gb|AC007961.32| Mus musculus strain 129S6/SvEvTac clone rp21-594... 38 8.0
16gb|AY113254.1| Drosophila melanogaster AT14373 full insert cDNA 38 8.0
17ref|NM_170238.1| Drosophila melanogaster CG4774-RC, transcript v... 38 8.0
18ref|NM_170237.1| Drosophila melanogaster CG4774-RB, transcript v... 38 8.0
19ref|NM_143161.1| Drosophila melanogaster CG4774-RA, transcript v... 38 8.0
20emb|BX510912.4| Zebrafish DNA sequence from clone CH211-18J22 in... 38 8.0
21gb|AC091074.3|AC091074 Homo sapiens chromosome 15 clone RP11-640... 38 8.0
22emb|BX248509.4| Zebrafish DNA sequence from clone CH211-113O22, ... 38 8.0
23dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.0
24dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.0
25gb|AC010580.5|AC010580 Drosophila melanogaster, chromosome 3R, r... 38 8.0
26gb|AC010579.9|AC010579 Drosophila melanogaster, chromosome 3R, r... 38 8.0
27dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic D... 38 8.0
28gb|AC090629.8| Homo sapiens 12 BAC RP11-410B16 (Roswell Park Can... 38 8.0
29dbj|AP007207.1| Mus musculus molossinus genomic DNA, chromosome ... 38 8.0
30dbj|AK131036.1| Homo sapiens cDNA FLJ29001 fis, clone CBL08678 38 8.0
31gb|AE003753.3| Drosophila melanogaster chromosome 3R, section 91... 38 8.0
32dbj|AB109023.1| Homo sapiens syt XV-b mRNA for synaptotagmin XV-... 38 8.0
33dbj|AB109022.1| Homo sapiens syt XV-a mRNA for synaptotagmin XV-... 38 8.0
34gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 8.0
35emb|AL954371.6| Zebrafish DNA sequence from clone CH211-207O15, ... 38 8.0
36emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa... 38 8.0

>gb|AY145451.1| Hordeum vulgare actin mRNA, complete cds
          Length = 1421

 Score =  222 bits (112), Expect = 3e-55
 Identities = 132/137 (96%), Gaps = 2/137 (1%)
 Strand = Plus / Minus

                                                                        
Query: 29   ttacagacaattgcccaacaacaaatcaagctcaanccaagtttgacaactgntcccaca 88
            |||||||||||| |||||||||||||||||| ||| |||||||||||||||| |||||||
Sbjct: 1413 ttacagacaatt-cccaacaacaaatcaagc-caacccaagtttgacaactgatcccaca 1356

                                                                        
Query: 89   aacacactgacaatgcacaaacatagatagngtacttgcacttgcaccatggagccgcca 148
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1355 aacacactgacaatgcacaaacatagatagtgtacttgcacttgcaccatggagccgcca 1296

                             
Query: 149  cgtatataggtggcgta 165
            |||||||||||||||||
Sbjct: 1295 cgtatataggtggcgta 1279



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>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence
          Length = 153766

 Score =  186 bits (94), Expect = 1e-44
 Identities = 150/164 (91%), Gaps = 7/164 (4%)
 Strand = Plus / Plus

                                                                        
Query: 1    aaatacatagtcaaaaaccatgngcntattacagacaattgcccaacaacaaatcaagct 60
            |||||||||| ||||||||||| || |||||||||||| |  ||||||||||||||||| 
Sbjct: 8939 aaatacatag-caaaaaccatgagc-tattacagacaact--ccaacaacaaatcaagc- 8993

                                                                        
Query: 61   caanccaagtttgacaactgntcccacaaacacactgacaatgcacaaacatagata--g 118
            ||| |||||||||||||||| || |||||||||||||||||| ||||||||||||||  |
Sbjct: 8994 caacccaagtttgacaactgatctcacaaacacactgacaatacacaaacatagatatag 9053

                                                        
Query: 119  ngtacttgcacttgcaccatggagccgccacgtatataggtggc 162
             |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9054 tgtacttgcacttgcaccatggagccgccacgtatataggtggc 9097



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>gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156G16, complete sequence
          Length = 187012

 Score =  163 bits (82), Expect = 2e-37
 Identities = 147/163 (90%), Gaps = 9/163 (5%)
 Strand = Plus / Plus

                                                                         
Query: 1     aaatacatagtcaaaaaccatgngcntattacagacaattgcccaacaacaaatcaagct 60
             |||||||||| ||||||||||| || |||||||||||| |  ||||||||||||||||| 
Sbjct: 17547 aaatacatag-caaaaaccatgagc-tattacagacaact--ccaacaacaaatcaagc- 17601

                                                                         
Query: 61    caanccaagtttgacaactgntcccacaaacacactg--acaatgcacaaacatagata- 117
             ||| |||||||||||||||| || |||||||||||||  ||||| |||||||||||||| 
Sbjct: 17602 caacccaagtttgacaactgatctcacaaacacactgtgacaatacacaaacatagatat 17661

                                                        
Query: 118   -gngtacttgcacttgcaccatggagccgccacgtatataggt 159
              | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 17662 agtgtacttgcacttgcaccatggagccgccacgtatataggt 17704



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>ref|NM_031912.3| Homo sapiens synaptotagmin XV (SYT15), transcript variant a, mRNA
          Length = 4862

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 86   acaaacacactgacaatgc 104
            |||||||||||||||||||
Sbjct: 1106 acaaacacactgacaatgc 1088



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>ref|NM_181519.2| Homo sapiens synaptotagmin XV (SYT15), transcript variant b, mRNA
          Length = 1536

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 86   acaaacacactgacaatgc 104
            |||||||||||||||||||
Sbjct: 1106 acaaacacactgacaatgc 1088



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>gb|AC114643.9| Mus musculus chromosome 6, clone RP24-127D6, complete sequence
          Length = 215696

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 124    ttgcacttgcaccatggag 142
              |||||||||||||||||||
Sbjct: 159406 ttgcacttgcaccatggag 159388



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>gb|AC068241.7| Mus musculus chromosome 10, clone RP23-48L1, complete sequence
          Length = 218191

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     aatacatagtcaaaaacca 20
             |||||||||||||||||||
Sbjct: 22458 aatacatagtcaaaaacca 22476



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>gb|AC142499.9| Mus musculus strain C57BL/6J clone rp23-333m15, complete sequence
          Length = 215706

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      aatacatagtcaaaaacca 20
              |||||||||||||||||||
Sbjct: 137941 aatacatagtcaaaaacca 137959



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>gb|AC144592.26| Medicago truncatula clone mth2-23m13, complete sequence
          Length = 139267

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 41   gcccaacaacaaatcaagctcaa 63
            |||||| ||||||||||||||||
Sbjct: 5655 gcccaataacaaatcaagctcaa 5633



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>emb|CR391913.7| Zebrafish DNA sequence from clone DKEY-118P6 in linkage group 5, complete
              sequence
          Length = 190731

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 28     attacagacaattgcccaa 46
              |||||||||||||||||||
Sbjct: 155593 attacagacaattgcccaa 155575



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>emb|AL117383.19|HSJ885A10 Human DNA sequence from clone RP5-885A10 on chromosome 20 Contains the
              CBLNL1 gene for cerebellin precursor-like 1 and a CpG
              Island, complete sequence
          Length = 117854

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 89     aacacactgacaatgcaca 107
              |||||||||||||||||||
Sbjct: 115928 aacacactgacaatgcaca 115910



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>emb|AJ303363.1|HSA303363 Homo sapiens partial mRNA for chr10 synaptotagmin (CHR10SYT gene)
          Length = 493

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 86  acaaacacactgacaatgc 104
           |||||||||||||||||||
Sbjct: 323 acaaacacactgacaatgc 305



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>emb|BX927098.24| Zebrafish DNA sequence from clone DKEY-228D14 in linkage group 13,
           complete sequence
          Length = 229413

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 87  caaacacactgacaatgca 105
           |||||||||||||||||||
Sbjct: 322 caaacacactgacaatgca 340



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>dbj|AK127436.1| Homo sapiens cDNA FLJ45528 fis, clone BRTHA2027250, weakly  similar
            to Synaptotagmin B
          Length = 3534

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 86   acaaacacactgacaatgc 104
            |||||||||||||||||||
Sbjct: 1700 acaaacacactgacaatgc 1682



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>gb|AC007961.32| Mus musculus strain 129S6/SvEvTac clone rp21-594l4 map 10, complete
              sequence
          Length = 180585

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      aatacatagtcaaaaacca 20
              |||||||||||||||||||
Sbjct: 168730 aatacatagtcaaaaacca 168748



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>gb|AY113254.1| Drosophila melanogaster AT14373 full insert cDNA
          Length = 1455

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 131 tgcaccatggagccgccac 149
           |||||||||||||||||||
Sbjct: 360 tgcaccatggagccgccac 378



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>ref|NM_170238.1| Drosophila melanogaster CG4774-RC, transcript variant C (CG4774),
           mRNA
          Length = 1358

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 131 tgcaccatggagccgccac 149
           |||||||||||||||||||
Sbjct: 279 tgcaccatggagccgccac 297



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>ref|NM_170237.1| Drosophila melanogaster CG4774-RB, transcript variant B (CG4774),
           mRNA
          Length = 1439

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 131 tgcaccatggagccgccac 149
           |||||||||||||||||||
Sbjct: 360 tgcaccatggagccgccac 378



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>ref|NM_143161.1| Drosophila melanogaster CG4774-RA, transcript variant A (CG4774),
           mRNA
          Length = 1329

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 131 tgcaccatggagccgccac 149
           |||||||||||||||||||
Sbjct: 250 tgcaccatggagccgccac 268



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>emb|BX510912.4| Zebrafish DNA sequence from clone CH211-18J22 in linkage group 3,
              complete sequence
          Length = 189210

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 87     caaacacactgacaatgca 105
              |||||||||||||||||||
Sbjct: 105495 caaacacactgacaatgca 105477



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>gb|AC091074.3|AC091074 Homo sapiens chromosome 15 clone RP11-640I2 map 15q21.1, complete
             sequence
          Length = 161083

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 82    tcccacaaacacactgaca 100
             |||||||||||||||||||
Sbjct: 44839 tcccacaaacacactgaca 44857



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>emb|BX248509.4| Zebrafish DNA sequence from clone CH211-113O22, complete sequence
          Length = 61707

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 85    cacaaacacactgacaatg 103
             |||||||||||||||||||
Sbjct: 25150 cacaaacacactgacaatg 25132



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 33     agacaattgcccaacaaca 51
              |||||||||||||||||||
Sbjct: 467623 agacaattgcccaacaaca 467605



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 1        aaatacatagtcaaaaacc 19
                |||||||||||||||||||
Sbjct: 24057810 aaatacatagtcaaaaacc 24057792



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>gb|AC010580.5|AC010580 Drosophila melanogaster, chromosome 3R, region 96F-96F, BAC clone
             BACR48J06, complete sequence
          Length = 163970

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 131   tgcaccatggagccgccac 149
             |||||||||||||||||||
Sbjct: 30467 tgcaccatggagccgccac 30449



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>gb|AC010579.9|AC010579 Drosophila melanogaster, chromosome 3R, region 96F-96F, BAC clone
              BACR09D08, complete sequence
          Length = 167396

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 131    tgcaccatggagccgccac 149
              |||||||||||||||||||
Sbjct: 118410 tgcaccatggagccgccac 118392



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>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0410E03
          Length = 164839

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     aaatacatagtcaaaaacc 19
             |||||||||||||||||||
Sbjct: 33632 aaatacatagtcaaaaacc 33614



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>gb|AC090629.8| Homo sapiens 12 BAC RP11-410B16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 159240

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 82     tcccacaaacacactgaca 100
              |||||||||||||||||||
Sbjct: 117397 tcccacaaacacactgaca 117415



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>dbj|AP007207.1| Mus musculus molossinus genomic DNA, chromosome 1 clone:MSMg01-122K03,
              complete sequence
          Length = 173324

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 85     cacaaacacactgacaatgcacaaaca 111
              |||||||||||| ||||| ||||||||
Sbjct: 117463 cacaaacacacttacaattcacaaaca 117489



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>dbj|AK131036.1| Homo sapiens cDNA FLJ29001 fis, clone CBL08678
          Length = 1451

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 86   acaaacacactgacaatgc 104
            |||||||||||||||||||
Sbjct: 1106 acaaacacactgacaatgc 1088



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>gb|AE003753.3| Drosophila melanogaster chromosome 3R, section 91 of 118 of the
             complete sequence
          Length = 226793

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 131   tgcaccatggagccgccac 149
             |||||||||||||||||||
Sbjct: 25483 tgcaccatggagccgccac 25465



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>dbj|AB109023.1| Homo sapiens syt XV-b mRNA for synaptotagmin XV-b, complete cds
          Length = 1194

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 86  acaaacacactgacaatgc 104
           |||||||||||||||||||
Sbjct: 953 acaaacacactgacaatgc 935



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>dbj|AB109022.1| Homo sapiens syt XV-a mRNA for synaptotagmin XV-a, complete cds
          Length = 1266

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 86  acaaacacactgacaatgc 104
           |||||||||||||||||||
Sbjct: 953 acaaacacactgacaatgc 935



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 33     agacaattgcccaacaaca 51
              |||||||||||||||||||
Sbjct: 467623 agacaattgcccaacaaca 467605



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>emb|AL954371.6| Zebrafish DNA sequence from clone CH211-207O15, complete sequence
          Length = 124954

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 85     cacaaacacactgacaatg 103
              |||||||||||||||||||
Sbjct: 110450 cacaaacacactgacaatg 110432



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>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 141089

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 33    agacaattgcccaacaaca 51
             |||||||||||||||||||
Sbjct: 79149 agacaattgcccaacaaca 79167


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,151,277
Number of Sequences: 3902068
Number of extensions: 1151277
Number of successful extensions: 68417
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68284
Number of HSP's gapped (non-prelim): 127
length of query: 165
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 143
effective length of database: 17,147,199,772
effective search space: 2452049567396
effective search space used: 2452049567396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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