| Clone Name | rbags29e08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY145451.1| Hordeum vulgare actin mRNA, complete cds Length = 1421 Score = 222 bits (112), Expect = 3e-55 Identities = 132/137 (96%), Gaps = 2/137 (1%) Strand = Plus / Minus Query: 29 ttacagacaattgcccaacaacaaatcaagctcaanccaagtttgacaactgntcccaca 88 |||||||||||| |||||||||||||||||| ||| |||||||||||||||| ||||||| Sbjct: 1413 ttacagacaatt-cccaacaacaaatcaagc-caacccaagtttgacaactgatcccaca 1356 Query: 89 aacacactgacaatgcacaaacatagatagngtacttgcacttgcaccatggagccgcca 148 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1355 aacacactgacaatgcacaaacatagatagtgtacttgcacttgcaccatggagccgcca 1296 Query: 149 cgtatataggtggcgta 165 ||||||||||||||||| Sbjct: 1295 cgtatataggtggcgta 1279
>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence Length = 153766 Score = 186 bits (94), Expect = 1e-44 Identities = 150/164 (91%), Gaps = 7/164 (4%) Strand = Plus / Plus Query: 1 aaatacatagtcaaaaaccatgngcntattacagacaattgcccaacaacaaatcaagct 60 |||||||||| ||||||||||| || |||||||||||| | ||||||||||||||||| Sbjct: 8939 aaatacatag-caaaaaccatgagc-tattacagacaact--ccaacaacaaatcaagc- 8993 Query: 61 caanccaagtttgacaactgntcccacaaacacactgacaatgcacaaacatagata--g 118 ||| |||||||||||||||| || |||||||||||||||||| |||||||||||||| | Sbjct: 8994 caacccaagtttgacaactgatctcacaaacacactgacaatacacaaacatagatatag 9053 Query: 119 ngtacttgcacttgcaccatggagccgccacgtatataggtggc 162 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9054 tgtacttgcacttgcaccatggagccgccacgtatataggtggc 9097
>gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156G16, complete sequence Length = 187012 Score = 163 bits (82), Expect = 2e-37 Identities = 147/163 (90%), Gaps = 9/163 (5%) Strand = Plus / Plus Query: 1 aaatacatagtcaaaaaccatgngcntattacagacaattgcccaacaacaaatcaagct 60 |||||||||| ||||||||||| || |||||||||||| | ||||||||||||||||| Sbjct: 17547 aaatacatag-caaaaaccatgagc-tattacagacaact--ccaacaacaaatcaagc- 17601 Query: 61 caanccaagtttgacaactgntcccacaaacacactg--acaatgcacaaacatagata- 117 ||| |||||||||||||||| || ||||||||||||| ||||| |||||||||||||| Sbjct: 17602 caacccaagtttgacaactgatctcacaaacacactgtgacaatacacaaacatagatat 17661 Query: 118 -gngtacttgcacttgcaccatggagccgccacgtatataggt 159 | |||||||||||||||||||||||||||||||||||||||| Sbjct: 17662 agtgtacttgcacttgcaccatggagccgccacgtatataggt 17704
>ref|NM_031912.3| Homo sapiens synaptotagmin XV (SYT15), transcript variant a, mRNA Length = 4862 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 86 acaaacacactgacaatgc 104 ||||||||||||||||||| Sbjct: 1106 acaaacacactgacaatgc 1088
>ref|NM_181519.2| Homo sapiens synaptotagmin XV (SYT15), transcript variant b, mRNA Length = 1536 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 86 acaaacacactgacaatgc 104 ||||||||||||||||||| Sbjct: 1106 acaaacacactgacaatgc 1088
>gb|AC114643.9| Mus musculus chromosome 6, clone RP24-127D6, complete sequence Length = 215696 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 124 ttgcacttgcaccatggag 142 ||||||||||||||||||| Sbjct: 159406 ttgcacttgcaccatggag 159388
>gb|AC068241.7| Mus musculus chromosome 10, clone RP23-48L1, complete sequence Length = 218191 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 aatacatagtcaaaaacca 20 ||||||||||||||||||| Sbjct: 22458 aatacatagtcaaaaacca 22476
>gb|AC142499.9| Mus musculus strain C57BL/6J clone rp23-333m15, complete sequence Length = 215706 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 aatacatagtcaaaaacca 20 ||||||||||||||||||| Sbjct: 137941 aatacatagtcaaaaacca 137959
>gb|AC144592.26| Medicago truncatula clone mth2-23m13, complete sequence Length = 139267 Score = 38.2 bits (19), Expect = 8.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 41 gcccaacaacaaatcaagctcaa 63 |||||| |||||||||||||||| Sbjct: 5655 gcccaataacaaatcaagctcaa 5633
>emb|CR391913.7| Zebrafish DNA sequence from clone DKEY-118P6 in linkage group 5, complete sequence Length = 190731 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 attacagacaattgcccaa 46 ||||||||||||||||||| Sbjct: 155593 attacagacaattgcccaa 155575
>emb|AL117383.19|HSJ885A10 Human DNA sequence from clone RP5-885A10 on chromosome 20 Contains the CBLNL1 gene for cerebellin precursor-like 1 and a CpG Island, complete sequence Length = 117854 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 89 aacacactgacaatgcaca 107 ||||||||||||||||||| Sbjct: 115928 aacacactgacaatgcaca 115910
>emb|AJ303363.1|HSA303363 Homo sapiens partial mRNA for chr10 synaptotagmin (CHR10SYT gene) Length = 493 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 86 acaaacacactgacaatgc 104 ||||||||||||||||||| Sbjct: 323 acaaacacactgacaatgc 305
>emb|BX927098.24| Zebrafish DNA sequence from clone DKEY-228D14 in linkage group 13, complete sequence Length = 229413 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 87 caaacacactgacaatgca 105 ||||||||||||||||||| Sbjct: 322 caaacacactgacaatgca 340
>dbj|AK127436.1| Homo sapiens cDNA FLJ45528 fis, clone BRTHA2027250, weakly similar to Synaptotagmin B Length = 3534 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 86 acaaacacactgacaatgc 104 ||||||||||||||||||| Sbjct: 1700 acaaacacactgacaatgc 1682
>gb|AC007961.32| Mus musculus strain 129S6/SvEvTac clone rp21-594l4 map 10, complete sequence Length = 180585 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 aatacatagtcaaaaacca 20 ||||||||||||||||||| Sbjct: 168730 aatacatagtcaaaaacca 168748
>gb|AY113254.1| Drosophila melanogaster AT14373 full insert cDNA Length = 1455 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 131 tgcaccatggagccgccac 149 ||||||||||||||||||| Sbjct: 360 tgcaccatggagccgccac 378
>ref|NM_170238.1| Drosophila melanogaster CG4774-RC, transcript variant C (CG4774), mRNA Length = 1358 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 131 tgcaccatggagccgccac 149 ||||||||||||||||||| Sbjct: 279 tgcaccatggagccgccac 297
>ref|NM_170237.1| Drosophila melanogaster CG4774-RB, transcript variant B (CG4774), mRNA Length = 1439 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 131 tgcaccatggagccgccac 149 ||||||||||||||||||| Sbjct: 360 tgcaccatggagccgccac 378
>ref|NM_143161.1| Drosophila melanogaster CG4774-RA, transcript variant A (CG4774), mRNA Length = 1329 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 131 tgcaccatggagccgccac 149 ||||||||||||||||||| Sbjct: 250 tgcaccatggagccgccac 268
>emb|BX510912.4| Zebrafish DNA sequence from clone CH211-18J22 in linkage group 3, complete sequence Length = 189210 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 caaacacactgacaatgca 105 ||||||||||||||||||| Sbjct: 105495 caaacacactgacaatgca 105477
>gb|AC091074.3|AC091074 Homo sapiens chromosome 15 clone RP11-640I2 map 15q21.1, complete sequence Length = 161083 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 tcccacaaacacactgaca 100 ||||||||||||||||||| Sbjct: 44839 tcccacaaacacactgaca 44857
>emb|BX248509.4| Zebrafish DNA sequence from clone CH211-113O22, complete sequence Length = 61707 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 cacaaacacactgacaatg 103 ||||||||||||||||||| Sbjct: 25150 cacaaacacactgacaatg 25132
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 agacaattgcccaacaaca 51 ||||||||||||||||||| Sbjct: 467623 agacaattgcccaacaaca 467605
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 aaatacatagtcaaaaacc 19 ||||||||||||||||||| Sbjct: 24057810 aaatacatagtcaaaaacc 24057792
>gb|AC010580.5|AC010580 Drosophila melanogaster, chromosome 3R, region 96F-96F, BAC clone BACR48J06, complete sequence Length = 163970 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 131 tgcaccatggagccgccac 149 ||||||||||||||||||| Sbjct: 30467 tgcaccatggagccgccac 30449
>gb|AC010579.9|AC010579 Drosophila melanogaster, chromosome 3R, region 96F-96F, BAC clone BACR09D08, complete sequence Length = 167396 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 131 tgcaccatggagccgccac 149 ||||||||||||||||||| Sbjct: 118410 tgcaccatggagccgccac 118392
>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E03 Length = 164839 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 aaatacatagtcaaaaacc 19 ||||||||||||||||||| Sbjct: 33632 aaatacatagtcaaaaacc 33614
>gb|AC090629.8| Homo sapiens 12 BAC RP11-410B16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159240 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 tcccacaaacacactgaca 100 ||||||||||||||||||| Sbjct: 117397 tcccacaaacacactgaca 117415
>dbj|AP007207.1| Mus musculus molossinus genomic DNA, chromosome 1 clone:MSMg01-122K03, complete sequence Length = 173324 Score = 38.2 bits (19), Expect = 8.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 85 cacaaacacactgacaatgcacaaaca 111 |||||||||||| ||||| |||||||| Sbjct: 117463 cacaaacacacttacaattcacaaaca 117489
>dbj|AK131036.1| Homo sapiens cDNA FLJ29001 fis, clone CBL08678 Length = 1451 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 86 acaaacacactgacaatgc 104 ||||||||||||||||||| Sbjct: 1106 acaaacacactgacaatgc 1088
>gb|AE003753.3| Drosophila melanogaster chromosome 3R, section 91 of 118 of the complete sequence Length = 226793 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 131 tgcaccatggagccgccac 149 ||||||||||||||||||| Sbjct: 25483 tgcaccatggagccgccac 25465
>dbj|AB109023.1| Homo sapiens syt XV-b mRNA for synaptotagmin XV-b, complete cds Length = 1194 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 86 acaaacacactgacaatgc 104 ||||||||||||||||||| Sbjct: 953 acaaacacactgacaatgc 935
>dbj|AB109022.1| Homo sapiens syt XV-a mRNA for synaptotagmin XV-a, complete cds Length = 1266 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 86 acaaacacactgacaatgc 104 ||||||||||||||||||| Sbjct: 953 acaaacacactgacaatgc 935
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 agacaattgcccaacaaca 51 ||||||||||||||||||| Sbjct: 467623 agacaattgcccaacaaca 467605
>emb|AL954371.6| Zebrafish DNA sequence from clone CH211-207O15, complete sequence Length = 124954 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 cacaaacacactgacaatg 103 ||||||||||||||||||| Sbjct: 110450 cacaaacacactgacaatg 110432
>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141089 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 agacaattgcccaacaaca 51 ||||||||||||||||||| Sbjct: 79149 agacaattgcccaacaaca 79167 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,151,277 Number of Sequences: 3902068 Number of extensions: 1151277 Number of successful extensions: 68417 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68284 Number of HSP's gapped (non-prelim): 127 length of query: 165 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 143 effective length of database: 17,147,199,772 effective search space: 2452049567396 effective search space used: 2452049567396 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)