ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags29e03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY111037.1| Zea mays CL1013_1 mRNA sequence 202 9e-49
2dbj|AK072820.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 151 3e-33
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
5gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare str... 151 3e-33
6ref|NM_111903.1| Arabidopsis thaliana ATNAP7 AT3G10670 (ATNAP7) ... 68 3e-08
7gb|AC013428.6|ATAC013428 Arabidopsis thaliana chromosome III BAC... 68 3e-08
8gb|AY113917.1| Arabidopsis thaliana putative ABC transporter ATP... 68 3e-08
9gb|AY035125.1| Arabidopsis thaliana putative ABC transporter ATP... 68 3e-08
10gb|AF286222.1| Arabidopsis thaliana calcium-dependent protein ki... 68 3e-08
11dbj|AK221144.1| Arabidopsis thaliana mRNA for ABC transporter li... 68 3e-08
12tpg|BK005580.1| TPA: TPA_exp: Arabidopsis thaliana plastid SufC-... 68 3e-08
13emb|BX824893.1|CNS0A6YG Arabidopsis thaliana Full-length cDNA Co... 68 3e-08
14gb|AC011560.6|AC011560 Arabidopsis thaliana chromosome 3 BAC F13... 68 3e-08
15gb|AY085010.1| Arabidopsis thaliana clone 124334 mRNA, complete ... 68 3e-08
16emb|BX823288.1|CNS0A6IN Arabidopsis thaliana Full-length cDNA Co... 66 1e-07
17emb|BX822291.1|CNS0A774 Arabidopsis thaliana Full-length cDNA Co... 52 0.002
18dbj|AB236840.1| Trifolium pratense RNA for putative ABC transpor... 48 0.031
19gb|AC067747.7| Homo sapiens chromosome 10 clone RP11-406H21, com... 44 0.48
20gb|AC008276.4| Homo sapiens BAC clone RP11-297I3 from 2, complet... 44 0.48
21emb|AL157406.19| Human DNA sequence from clone RP3-380B4 on chro... 42 1.9
22gb|AC016266.14| Homo sapiens chromosome 15, clone RP11-2C7, comp... 42 1.9
23gb|AC109512.12| Homo sapiens chromosome 15, clone RP11-931B1, co... 42 1.9
24gb|AY850640.1| Rachovia brevis isolate 2617 NADH dehydrogenase s... 40 7.6
25gb|AC146108.3| Pan troglodytes BAC clone RP43-22F10 from 7, comp... 40 7.6
26gb|AC146056.2| Pan troglodytes BAC clone RP43-89N11 from 7, comp... 40 7.6
27ref|XM_645959.1| Entamoeba histolytica HM-1:IMSS ADP-sugar pyrop... 40 7.6
28gb|AC098709.3| Mus musculus BAC clone RP23-1K14 from 1, complete... 40 7.6
29gb|AC006979.2| Homo sapiens BAC clone GS1-85B12 from 7, complete... 40 7.6
30emb|AL772262.4| Human DNA sequence from clone RP11-444C24 on chr... 40 7.6
31dbj|AP006861.1| Chlamydophila felis Fe/C-56 DNA, complete genome 40 7.6
32gb|AC084337.7| Homo sapiens chromosome 11, clone CTD-2010I16, co... 40 7.6
33gb|AC026698.6| Homo sapiens chromosome 5 clone CTC-457H17, compl... 40 7.6
34gb|AC125783.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.6
35dbj|AK169735.1| Mus musculus 2 days neonate thymus thymic cells ... 40 7.6
36gb|AC005406.2| Homo sapiens clone b128f11, complete sequence 40 7.6
37dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
38gb|AC009796.6|AC009796 Homo sapiens chromosome 11, clone RP11-21... 40 7.6
39emb|BX824371.1|CNS0A6WF Arabidopsis thaliana Full-length cDNA Co... 40 7.6
40dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 40 7.6
41emb|AL807744.7| Mouse DNA sequence from clone RP23-174C4 on chro... 40 7.6
42gb|AC009542.2|AC009542 Homo sapiens clone RP11-260N14 from 7q31,... 40 7.6
43gb|AC009330.5|AC009330 Homo sapiens clone RP11-83M17 from 7q31, ... 40 7.6
44gb|AF038816.1|AF038816 Serratia marcescens putative dTDP-4-dehyd... 40 7.6
45gb|AC099712.21| Mus musculus chromosome 1, clone RP23-400C10, co... 40 7.6
46gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.6
47gb|AE015925.1| Chlamydophila caviae GPIC, complete genome 40 7.6
48dbj|AP004949.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 7.6 
>gb|AY111037.1| Zea mays CL1013_1 mRNA sequence
          Length = 851

 Score =  202 bits (102), Expect = 9e-49
 Identities = 175/198 (88%), Gaps = 1/198 (0%)
 Strand = Plus / Minus

                                                                       
Query: 361 ctgtcacctgtcttcactatcttgccgctttccatgatgtgaacatagcttggcttaata 420
           |||||||| ||||| | |||||||||  ||||||||||| |||| || || |||||||| 
Sbjct: 417 ctgtcacccgtcttgattatcttgccattttccatgatgggaacgtaactgggcttaatg 358

                                                                       
Query: 421 agatccaaaagacgttggtaatgtgtaatcatcaaaacagagttttggggagtcaaaagc 480
           |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 357 agatccaaaagacgttggtaatgtgtaatcatcagaacagagttttggggtgtcaacagc 298

                                                                       
Query: 481 c-cattcactgcatgagctacatcttcaagtgcatcaacatctaatcctgaatcgatttc 539
           | | | |||||||| ||| |||||||||||||||||||||||||| |||||||| || ||
Sbjct: 297 ctcgtgcactgcattagcaacatcttcaagtgcatcaacatctaaccctgaatctatctc 238

                             
Query: 540 gtcgaggagggctaaatc 557
           ||| || |||||||||||
Sbjct: 237 gtcaagaagggctaaatc 220
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>dbj|AK072820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135H16, full
           insert sequence
          Length = 1156

 Score =  184 bits (93), Expect = 2e-43
 Identities = 171/197 (86%)
 Strand = Plus / Minus

                                                                       
Query: 361 ctgtcacctgtcttcactatcttgccgctttccatgatgtgaacatagcttggcttaata 420
           |||||||| |||||||||||||||||  |||||||||||||||||||||| |||||||||
Sbjct: 925 ctgtcacccgtcttcactatcttgcccttttccatgatgtgaacatagctgggcttaata 866

                                                                       
Query: 421 agatccaaaagacgttggtaatgtgtaatcatcaaaacagagttttggggagtcaaaagc 480
           |||||||| ||||||||||| |||||||||||||  | |||| | |  || ||||| | |
Sbjct: 865 agatccaagagacgttggtagtgtgtaatcatcattagagagctgtttggtgtcaagatc 806

                                                                       
Query: 481 ccattcactgcatgagctacatcttcaagtgcatcaacatctaatcctgaatcgatttcg 540
           ||||||||||| | |||||||| ||| |||||||||||||||||||| ||||| || |||
Sbjct: 805 ccattcactgctttagctacatattcgagtgcatcaacatctaatcccgaatcaatctcg 746

                            
Query: 541 tcgaggagggctaaatc 557
           || || || ||||||||
Sbjct: 745 tcaagaagagctaaatc 729
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  151 bits (76), Expect = 3e-33
 Identities = 148/172 (86%)
 Strand = Plus / Plus

                                                                            
Query: 386      cgctttccatgatgtgaacatagcttggcttaataagatccaaaagacgttggtaatgtg 445
                ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct: 12250655 cgcttaccatgatgtgaacatagctgggcttaataagatccaagagacgttggtagtgtg 12250714

                                                                            
Query: 446      taatcatcaaaacagagttttggggagtcaaaagcccattcactgcatgagctacatctt 505
                |||||||||  | |||| | |  || ||||| | |||||||||||| | |||||||| ||
Sbjct: 12250715 taatcatcattagagagctgtttggtgtcaagatcccattcactgctttagctacatatt 12250774

                                                                    
Query: 506      caagtgcatcaacatctaatcctgaatcgatttcgtcgaggagggctaaatc 557
                | |||||||||||||||||||| ||||| || ||||| || || ||||||||
Sbjct: 12250775 cgagtgcatcaacatctaatcccgaatcaatctcgtcaagaagagctaaatc 12250826



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 361      ctgtcacctgtcttcactatcttgcc 386
                |||||||| |||||||||||||||||
Sbjct: 12250039 ctgtcacccgtcttcactatcttgcc 12250064
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  151 bits (76), Expect = 3e-33
 Identities = 148/172 (86%)
 Strand = Plus / Plus

                                                                            
Query: 386      cgctttccatgatgtgaacatagcttggcttaataagatccaaaagacgttggtaatgtg 445
                ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct: 12247418 cgcttaccatgatgtgaacatagctgggcttaataagatccaagagacgttggtagtgtg 12247477

                                                                            
Query: 446      taatcatcaaaacagagttttggggagtcaaaagcccattcactgcatgagctacatctt 505
                |||||||||  | |||| | |  || ||||| | |||||||||||| | |||||||| ||
Sbjct: 12247478 taatcatcattagagagctgtttggtgtcaagatcccattcactgctttagctacatatt 12247537

                                                                    
Query: 506      caagtgcatcaacatctaatcctgaatcgatttcgtcgaggagggctaaatc 557
                | |||||||||||||||||||| ||||| || ||||| || || ||||||||
Sbjct: 12247538 cgagtgcatcaacatctaatcccgaatcaatctcgtcaagaagagctaaatc 12247589



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 361      ctgtcacctgtcttcactatcttgcc 386
                |||||||| |||||||||||||||||
Sbjct: 12246802 ctgtcacccgtcttcactatcttgcc 12246827
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>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0029K10, from chromosome 3, complete sequence
          Length = 135940

 Score =  151 bits (76), Expect = 3e-33
 Identities = 148/172 (86%)
 Strand = Plus / Plus

                                                                         
Query: 386   cgctttccatgatgtgaacatagcttggcttaataagatccaaaagacgttggtaatgtg 445
             ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct: 20188 cgcttaccatgatgtgaacatagctgggcttaataagatccaagagacgttggtagtgtg 20247

                                                                         
Query: 446   taatcatcaaaacagagttttggggagtcaaaagcccattcactgcatgagctacatctt 505
             |||||||||  | |||| | |  || ||||| | |||||||||||| | |||||||| ||
Sbjct: 20248 taatcatcattagagagctgtttggtgtcaagatcccattcactgctttagctacatatt 20307

                                                                 
Query: 506   caagtgcatcaacatctaatcctgaatcgatttcgtcgaggagggctaaatc 557
             | |||||||||||||||||||| ||||| || ||||| || || ||||||||
Sbjct: 20308 cgagtgcatcaacatctaatcccgaatcaatctcgtcaagaagagctaaatc 20359



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 361   ctgtcacctgtcttcactatcttgcc 386
             |||||||| |||||||||||||||||
Sbjct: 19572 ctgtcacccgtcttcactatcttgcc 19597
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>ref|NM_111903.1| Arabidopsis thaliana ATNAP7 AT3G10670 (ATNAP7) mRNA, complete cds
          Length = 1350

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                       
Query: 433 cgttggtaatgtgtaatcatcaaaacagagttttggggagtcaaaagcccattcactgca 492
           |||||||| || || ||||||| |||||||||||  || ||||||||||| ||||| || 
Sbjct: 976 cgttggtagtgcgttatcatcagaacagagttttttggtgtcaaaagcccgttcaccgcc 917

                                                             
Query: 493 tgagctacatcttcaagtgcatcaacatctaatcctgaatcgatttcgtc 542
           |  || ||||||| ||| ||||||||||| || |||||||| || |||||
Sbjct: 916 tttgccacatcttgaagagcatcaacatccaaccctgaatcaatctcgtc 867
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>gb|AC013428.6|ATAC013428 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence,
             complete sequence
          Length = 93985

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Plus

                                                                         
Query: 433   cgttggtaatgtgtaatcatcaaaacagagttttggggagtcaaaagcccattcactgca 492
             |||||||| || || ||||||| |||||||||||  || ||||||||||| ||||| || 
Sbjct: 92699 cgttggtagtgcgttatcatcagaacagagttttttggtgtcaaaagcccgttcaccgcc 92758

                                                               
Query: 493   tgagctacatcttcaagtgcatcaacatctaatcctgaatcgatttcgtc 542
             |  || ||||||| ||| ||||||||||| || |||||||| || |||||
Sbjct: 92759 tttgccacatcttgaagagcatcaacatccaaccctgaatcaatctcgtc 92808
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>gb|AY113917.1| Arabidopsis thaliana putative ABC transporter ATPase (At3g10670)
           mRNA, complete cds
          Length = 1048

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                       
Query: 433 cgttggtaatgtgtaatcatcaaaacagagttttggggagtcaaaagcccattcactgca 492
           |||||||| || || ||||||| |||||||||||  || ||||||||||| ||||| || 
Sbjct: 893 cgttggtagtgcgttatcatcagaacagagttttttggtgtcaaaagcccgttcaccgcc 834

                                                             
Query: 493 tgagctacatcttcaagtgcatcaacatctaatcctgaatcgatttcgtc 542
           |  || ||||||| ||| ||||||||||| || |||||||| || |||||
Sbjct: 833 tttgccacatcttgaagagcatcaacatccaaccctgaatcaatctcgtc 784
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>gb|AY035125.1| Arabidopsis thaliana putative ABC transporter ATPase (At3g10670)
           mRNA, complete cds
          Length = 1368

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                       
Query: 433 cgttggtaatgtgtaatcatcaaaacagagttttggggagtcaaaagcccattcactgca 492
           |||||||| || || ||||||| |||||||||||  || ||||||||||| ||||| || 
Sbjct: 976 cgttggtagtgcgttatcatcagaacagagttttttggtgtcaaaagcccgttcaccgcc 917

                                                             
Query: 493 tgagctacatcttcaagtgcatcaacatctaatcctgaatcgatttcgtc 542
           |  || ||||||| ||| ||||||||||| || |||||||| || |||||
Sbjct: 916 tttgccacatcttgaagagcatcaacatccaaccctgaatcaatctcgtc 867
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>gb|AF286222.1| Arabidopsis thaliana calcium-dependent protein kinase isoform 2
           (CPK2) gene, complete cds
          Length = 5622

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                       
Query: 433 cgttggtaatgtgtaatcatcaaaacagagttttggggagtcaaaagcccattcactgca 492
           |||||||| || || ||||||| |||||||||||  || ||||||||||| ||||| || 
Sbjct: 314 cgttggtagtgcgttatcatcagaacagagttttttggtgtcaaaagcccgttcaccgcc 255

                                                             
Query: 493 tgagctacatcttcaagtgcatcaacatctaatcctgaatcgatttcgtc 542
           |  || ||||||| ||| ||||||||||| || |||||||| || |||||
Sbjct: 254 tttgccacatcttgaagagcatcaacatccaaccctgaatcaatctcgtc 205
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>dbj|AK221144.1| Arabidopsis thaliana mRNA for ABC transporter like ATPase, partial
           cds, clone: RAFL22-93-J03
          Length = 526

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                       
Query: 433 cgttggtaatgtgtaatcatcaaaacagagttttggggagtcaaaagcccattcactgca 492
           |||||||| || || ||||||| |||||||||||  || ||||||||||| ||||| || 
Sbjct: 154 cgttggtagtgcgttatcatcagaacagagttttttggtgtcaaaagcccgttcaccgcc 95

                                                             
Query: 493 tgagctacatcttcaagtgcatcaacatctaatcctgaatcgatttcgtc 542
           |  || ||||||| ||| ||||||||||| || |||||||| || |||||
Sbjct: 94  tttgccacatcttgaagagcatcaacatccaaccctgaatcaatctcgtc 45
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>tpg|BK005580.1| TPA: TPA_exp: Arabidopsis thaliana plastid SufC-like protein (NAP7)
           mRNA, complete cds; nuclear gene for plastid product
          Length = 1017

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                       
Query: 433 cgttggtaatgtgtaatcatcaaaacagagttttggggagtcaaaagcccattcactgca 492
           |||||||| || || ||||||| |||||||||||  || ||||||||||| ||||| || 
Sbjct: 893 cgttggtagtgcgttatcatcagaacagagttttttggtgtcaaaagcccgttcaccgcc 834

                                                             
Query: 493 tgagctacatcttcaagtgcatcaacatctaatcctgaatcgatttcgtc 542
           |  || ||||||| ||| ||||||||||| || |||||||| || |||||
Sbjct: 833 tttgccacatcttgaagagcatcaacatccaaccctgaatcaatctcgtc 784
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>emb|BX824893.1|CNS0A6YG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH80ZD10 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1303

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                       
Query: 433 cgttggtaatgtgtaatcatcaaaacagagttttggggagtcaaaagcccattcactgca 492
           |||||||| || || ||||||| |||||||||||  || ||||||||||| ||||| || 
Sbjct: 966 cgttggtagtgcgttatcatcagaacagagttttttggtgtcaaaagcccgttcaccgcc 907

                                                             
Query: 493 tgagctacatcttcaagtgcatcaacatctaatcctgaatcgatttcgtc 542
           |  || ||||||| ||| ||||||||||| || |||||||| || |||||
Sbjct: 906 tttgccacatcttgaagagcatcaacatccaaccctgaatcaatctcgtc 857
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>gb|AC011560.6|AC011560 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete
             sequence
          Length = 118107

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                         
Query: 433   cgttggtaatgtgtaatcatcaaaacagagttttggggagtcaaaagcccattcactgca 492
             |||||||| || || ||||||| |||||||||||  || ||||||||||| ||||| || 
Sbjct: 11817 cgttggtagtgcgttatcatcagaacagagttttttggtgtcaaaagcccgttcaccgcc 11758

                                                               
Query: 493   tgagctacatcttcaagtgcatcaacatctaatcctgaatcgatttcgtc 542
             |  || ||||||| ||| ||||||||||| || |||||||| || |||||
Sbjct: 11757 tttgccacatcttgaagagcatcaacatccaaccctgaatcaatctcgtc 11708
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>gb|AY085010.1| Arabidopsis thaliana clone 124334 mRNA, complete sequence
          Length = 1350

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                       
Query: 433 cgttggtaatgtgtaatcatcaaaacagagttttggggagtcaaaagcccattcactgca 492
           |||||||| || || ||||||| |||||||||||  || ||||||||||| ||||| || 
Sbjct: 976 cgttggtagtgcgttatcatcagaacagagttttttggtgtcaaaagcccgttcaccgcc 917

                                                             
Query: 493 tgagctacatcttcaagtgcatcaacatctaatcctgaatcgatttcgtc 542
           |  || ||||||| ||| ||||||||||| || |||||||| || |||||
Sbjct: 916 tttgccacatcttgaagagcatcaacatccaaccctgaatcaatctcgtc 867
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>emb|BX823288.1|CNS0A6IN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS1ZF02 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1311

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 84/101 (83%)
 Strand = Plus / Minus

                                                                       
Query: 433 cgttggtaatgtgtaatcatcaaaacagagttttggggagtcaaaagcccattcactgca 492
           |||||||| || || ||||||| |||||||||||  || ||||||||||| ||||| || 
Sbjct: 968 cgttggtagtgcgttatcatcagaacagagttttttggtgtcaaaagcccgttcaccgcc 909

                                                    
Query: 493 tgagctacatcttcaagtgcatcaacatctaatcctgaatc 533
           |  || ||||||| ||| ||||||||||| || ||||||||
Sbjct: 908 tttgccacatcttgaagagcatcaacatccaaacctgaatc 868
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>emb|BX822291.1|CNS0A774 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB26ZH03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1277

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 89/110 (80%)
 Strand = Plus / Minus

                                                                       
Query: 433 cgttggtaatgtgtaatcatcaaaacagagttttggggagtcaaaagcccattcactgca 492
           |||||||| || |||||||||| |||| ||| ||  || ||||||||||| | ||| || 
Sbjct: 963 cgttggtagtgcgtaatcatcagaacaaagtattttggtgtcaaaagcccgtacaccgcc 904

                                                             
Query: 493 tgagctacatcttcaagtgcatcaacatctaatcctgaatcgatttcgtc 542
           |  || ||||||| ||| ||||||||||| || |||||||| || |||||
Sbjct: 903 tttgccacatcttgaagagcatcaacatccaaccctgaatcaatctcgtc 854
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>dbj|AB236840.1| Trifolium pratense RNA for putative ABC transporter like ATPase,
           partial cds, clone: C289
          Length = 1365

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 508 agtgcatcaacatctaatcctgaatcgatttc 539
           |||||||||||||| ||||||||||| |||||
Sbjct: 689 agtgcatcaacatccaatcctgaatcaatttc 658
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>gb|AC067747.7| Homo sapiens chromosome 10 clone RP11-406H21, complete sequence
          Length = 147280

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 107   ctccagtgtttcacctccaaaa 128
             ||||||||||||||||||||||
Sbjct: 99407 ctccagtgtttcacctccaaaa 99428
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>gb|AC008276.4| Homo sapiens BAC clone RP11-297I3 from 2, complete sequence
          Length = 208477

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 341    tgatgtggctggctagagagct 362
              ||||||||||||||||||||||
Sbjct: 185794 tgatgtggctggctagagagct 185773
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>emb|AL157406.19| Human DNA sequence from clone RP3-380B4 on chromosome 1p31.3-33
            Contains a novel gene, complete sequence
          Length = 123085

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 38   gtattaatattggaatccaacaaatctta 66
            |||||||| |||||| |||||||||||||
Sbjct: 3133 gtattaattttggaaaccaacaaatctta 3105
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>gb|AC016266.14| Homo sapiens chromosome 15, clone RP11-2C7, complete sequence
          Length = 149387

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 348    gctggctagagagctgtcacctgtcttca 376
              |||| |||||||||||||||| |||||||
Sbjct: 135345 gctgtctagagagctgtcaccagtcttca 135317
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>gb|AC109512.12| Homo sapiens chromosome 15, clone RP11-931B1, complete sequence
          Length = 189975

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 348   gctggctagagagctgtcacctgtcttca 376
             |||| |||||||||||||||| |||||||
Sbjct: 25249 gctgtctagagagctgtcaccagtcttca 25221
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>gb|AY850640.1| Rachovia brevis isolate 2617 NADH dehydrogenase subunit 1 (NADH1)
            gene, partial cds; tRNA-Ile, tRNA-Gln, and tRNA-Met
            genes, complete sequence; NADH dehydrogenase subunit 2
            (NADH2) gene, complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asn,
            tRNA-Cys, and tRNA-Tyr genes, complete sequence; and
            cytochrome oxidase subunit I (COI) gene, partial cds;
            mitochondrial
          Length = 1988

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   tccaacaaatcttacaggac 72
            ||||||||||||||||||||
Sbjct: 1658 tccaacaaatcttacaggac 1677
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>gb|AC146108.3| Pan troglodytes BAC clone RP43-22F10 from 7, complete sequence
          Length = 230349

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 440   aatgtgtaatcatcaaaacagagt 463
             ||||||||||||||||| ||||||
Sbjct: 98754 aatgtgtaatcatcaaatcagagt 98731
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>gb|AC146056.2| Pan troglodytes BAC clone RP43-89N11 from 7, complete sequence
          Length = 154447

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 440    aatgtgtaatcatcaaaacagagt 463
              ||||||||||||||||| ||||||
Sbjct: 142032 aatgtgtaatcatcaaatcagagt 142009
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>ref|XM_645959.1| Entamoeba histolytica HM-1:IMSS ADP-sugar pyrophosphatase, putative
           (185.t00005) partial mRNA
          Length = 630

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 511 gcatcaacatctaatcctga 530
           ||||||||||||||||||||
Sbjct: 170 gcatcaacatctaatcctga 151
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>gb|AC098709.3| Mus musculus BAC clone RP23-1K14 from 1, complete sequence
          Length = 189774

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 292 ccttattcatgctatacaaa 311
           ||||||||||||||||||||
Sbjct: 224 ccttattcatgctatacaaa 205
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>gb|AC006979.2| Homo sapiens BAC clone GS1-85B12 from 7, complete sequence
          Length = 103563

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 440   aatgtgtaatcatcaaaacagagt 463
             ||||||||||||||||| ||||||
Sbjct: 91671 aatgtgtaatcatcaaatcagagt 91648
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>emb|AL772262.4| Human DNA sequence from clone RP11-444C24 on chromosome X, complete
             sequence
          Length = 147079

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 440   aatgtgtaatcatcaaaacagagt 463
             ||||||||||||||||| ||||||
Sbjct: 95748 aatgtgtaatcatcaaatcagagt 95725
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>dbj|AP006861.1| Chlamydophila felis Fe/C-56 DNA, complete genome
          Length = 1166239

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 511     gcatcaacatctaatcctgaatcg 534
               |||||||||||||| |||||||||
Sbjct: 1099676 gcatcaacatctaaacctgaatcg 1099699
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>gb|AC084337.7| Homo sapiens chromosome 11, clone CTD-2010I16, complete sequence
          Length = 112295

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   ttgatgtggctggctagaga 359
             ||||||||||||||||||||
Sbjct: 48056 ttgatgtggctggctagaga 48075
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>gb|AC026698.6| Homo sapiens chromosome 5 clone CTC-457H17, complete sequence
          Length = 192731

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 232   aggctccatgccacttctag 251
             ||||||||||||||||||||
Sbjct: 58314 aggctccatgccacttctag 58333
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>gb|AC125783.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0039K08, complete sequence
          Length = 122163

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   ccagtgtttcacctccaaaa 128
             ||||||||||||||||||||
Sbjct: 60403 ccagtgtttcacctccaaaa 60384
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>dbj|AK169735.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430014G22
            product:DEAH (Asp-Glu-Ala-His) box polypeptide 9, full
            insert sequence
          Length = 2662

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 292  ccttattcatgctatacaaa 311
            ||||||||||||||||||||
Sbjct: 2572 ccttattcatgctatacaaa 2553
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>gb|AC005406.2| Homo sapiens clone b128f11, complete sequence
          Length = 226345

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 232    aggctccatgccacttctag 251
              ||||||||||||||||||||
Sbjct: 134518 aggctccatgccacttctag 134499
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 109      ccagtgtttcacctccaaaa 128
                ||||||||||||||||||||
Sbjct: 25748060 ccagtgtttcacctccaaaa 25748041
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>gb|AC009796.6|AC009796 Homo sapiens chromosome 11, clone RP11-211E17, complete sequence
          Length = 192239

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 340  ttgatgtggctggctagaga 359
            ||||||||||||||||||||
Sbjct: 3097 ttgatgtggctggctagaga 3116
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>emb|BX824371.1|CNS0A6WF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH44ZA08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1276

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                       
Query: 433 cgttggtaatgtgtaatcatcaaaacagagttttggggagtcaaaagcccattcactgca 492
           |||||||| || || ||||||| |||||||||||  || || |||||||| | ||| || 
Sbjct: 961 cgttggtagtgcgttatcatcagaacagagttttttggtgtgaaaagcccgtgcaccgcc 902

                                                   
Query: 493 tgagctacatcttcaagtgcatcaacatctaatcctgaat 532
           |  || ||||||| ||| |||| |||||| || |||||||
Sbjct: 901 tttgccacatcttgaagagcattaacatccaaccctgaat 862
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 134     aatatgcctggccaaatggg 153
               ||||||||||||||||||||
Sbjct: 2565082 aatatgcctggccaaatggg 2565063
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>emb|AL807744.7| Mouse DNA sequence from clone RP23-174C4 on chromosome X, complete
              sequence
          Length = 163576

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 435    ttggtaatgtgtaatcatca 454
              ||||||||||||||||||||
Sbjct: 124975 ttggtaatgtgtaatcatca 124956
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>gb|AC009542.2|AC009542 Homo sapiens clone RP11-260N14 from 7q31, complete sequence
          Length = 160367

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 440   aatgtgtaatcatcaaaacagagt 463
             ||||||||||||||||| ||||||
Sbjct: 63309 aatgtgtaatcatcaaatcagagt 63332
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>gb|AC009330.5|AC009330 Homo sapiens clone RP11-83M17 from 7q31, complete sequence
          Length = 174768

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 440   aatgtgtaatcatcaaaacagagt 463
             ||||||||||||||||| ||||||
Sbjct: 60482 aatgtgtaatcatcaaatcagagt 60505
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>gb|AF038816.1|AF038816 Serratia marcescens putative dTDP-4-dehydrorhamnose 3,5 epimerase
            (rmlC), putative dTDP-L-rhamnose synthase (rmlD),
            putative rhamnosyl transferase (wbbL), putative ABC
            transporter system integral membrane protein (wzm),
            putative ATP-binding protein (wzt), and WbbK (wbbK)
            genes, complete cds
          Length = 9917

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 314  aagcgattgatttgtagccaccct 337
            |||||||||||| |||||||||||
Sbjct: 5993 aagcgattgattcgtagccaccct 6016
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>gb|AC099712.21| Mus musculus chromosome 1, clone RP23-400C10, complete sequence
          Length = 196059

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   ccttattcatgctatacaaa 311
             ||||||||||||||||||||
Sbjct: 91761 ccttattcatgctatacaaa 91780
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 109      ccagtgtttcacctccaaaa 128
                ||||||||||||||||||||
Sbjct: 26066730 ccagtgtttcacctccaaaa 26066711
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>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 511   gcatcaacatctaatcctgaatcg 534
             ||||| ||||||||||||||||||
Sbjct: 66508 gcatccacatctaatcctgaatcg 66485
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>dbj|AP004949.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45F11, TM0122,
             complete sequence
          Length = 90864

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   aaaacagagttttggggagt 473
             ||||||||||||||||||||
Sbjct: 77284 aaaacagagttttggggagt 77265


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,023,161
Number of Sequences: 3902068
Number of extensions: 5023161
Number of successful extensions: 98102
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 97843
Number of HSP's gapped (non-prelim): 254
length of query: 557
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 534
effective length of database: 17,143,297,704
effective search space: 9154520973936
effective search space used: 9154520973936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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