>PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte|
            stimulating factor) (Superficial zone proteoglycan)
            [Contains: Proteoglycan-4 C-terminal part]
          Length = 1404

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 328  VTEVQPEKKPKAAAYTEAPAEDIDDVIELPDVPTKAPERPEATEKTK 188
            +T  +   KP+  A  +  A +       P  PTKAP++P +T+K K
Sbjct: 992  ITTTEIMNKPEETAKPKDRATNSKATTPKPQKPTKAPKKPTSTKKPK 1038

>K501_ACTCH (P43393) Fruit protein PKIWI501|
          Length = 184

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
 Frame = -2

Query: 367 EXELALESLPNAPVTEVQPEKK-------PKAAAYTEA--PAEDIDDVIELPDVPTKAPE 215
           E  +A    P  PVTE +PEK        P+  A T+A  PAE  +   E+ + P + PE
Sbjct: 31  EAAVAAPPAPAEPVTE-EPEKAAPEAVEAPEEPAATDAKDPAEVAEAEEEVVEEPQEVPE 89

Query: 214 RPEATEKTK 188
            P A    K
Sbjct: 90  EPVAEAAAK 98

>NP1L3_HUMAN (Q99457) Nucleosome assembly protein 1-like 3|
          Length = 506

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 328 VTEVQPEKKPKAAAYTEAPAEDIDDVIELPDVPTKAPERPEATE 197
           + EV+ E+K  +    EA  E  +D  E+P V     E+P+ATE
Sbjct: 227 IPEVKAEEKADSKDCMEATPEVKEDPKEVPQVKADDKEQPKATE 270

>TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-like protein)|
          Length = 4289

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 301  PKAAAYTEAPAEDIDDVIELPDVPTKAPERPE 206
            P++     AP ED+D+     ++ T+APE PE
Sbjct: 1427 PESVVAKTAPQEDVDETPSPTELGTEAPESPE 1458

>FTSK1_RALSO (Q8XRH0) DNA translocase ftsK 1|
          Length = 959

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 331 PVTEVQPEKKPKAAAYTEAPAEDIDDVIELPDVPTKAPE 215
           P  E +PE +P+A A  EA AE   +    P+    APE
Sbjct: 347 PEAEAEPEAEPEAEAEPEAEAEAEAEAEAEPEAEAPAPE 385

>SH3BG_HUMAN (P55822) SH3 domain-binding glutamic acid-rich protein (SH3BGR|
           protein) (21-glutamic acid-rich protein) (21-GARP)
          Length = 239

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 367 EXELALESLPNAPVTEVQPEKKPKAAAYTEAPAEDIDDVIELPDVPTKAPERPE-ATEKT 191
           E  +    L  AP  + +  +K +    TEA  E  +DV  LP+   K  E  E ATE+T
Sbjct: 150 EENIIYSFLGLAPPPDSKGSEKAEEGGETEAQKEGSEDVGNLPEAQEKNEEEGETATEET 209

Query: 190 K 188
           +
Sbjct: 210 E 210

>NFM_MOUSE (P08553) Neurofilament triplet M protein (160 kDa neurofilament|
           protein) (Neurofilament medium polypeptide) (NF-M)
          Length = 848

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = -2

Query: 361 ELALESLPNAPVTEVQPEKKPKAAAYTEAPAEDIDDVIELPDVPTKAPERPEATEK 194
           E A   +P +PV EV+P+ + KA    +   E +++  E  +V  ++P+  +  +K
Sbjct: 601 EKAKSPMPKSPVEEVKPKPEAKAGKGEQKEEEKVEE--EKKEVTKESPKEEKVEKK 654

>TBX12_CAEEL (P90971) T-box protein 12 (Protein male abnormal 9)|
          Length = 346

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 280 EAPAEDIDDVIELPDVPTKAPERPEATEK 194
           E   ED+DDV +L  +P+K+PER     K
Sbjct: 38  EVDVEDVDDV-DLSSIPSKSPERSRGRPK 65

>NFM_RAT (P12839) Neurofilament triplet M protein (160 kDa neurofilament|
           protein) (Neurofilament medium polypeptide) (NF-M)
          Length = 845

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -2

Query: 361 ELALESLPNAPVTEVQPEKKPKAAAYTEAPAEDIDDVIELPDVPTKAPERPEATEKTK 188
           E A   +P +PV EV+P+ + KA    +   E +++  E+     K  +  +  EK K
Sbjct: 599 EKAKSPVPKSPVEEVKPKPEAKAGKDEQKEEEKVEEKKEVAKESPKEEKVEKKEEKPK 656

>KIN3_YEAST (P22209) Serine/threonine-protein kinase KIN3 (EC 2.7.11.1)|
          Length = 435

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 242 KLNNIINVFSWSFSVSRCFRFLFRLYFSNGSIRQRLK 352
           K  NI+  ++W F   +   +L+  Y S G + Q +K
Sbjct: 80  KHENIVEFYNWDFDEQKEVLYLYMEYCSRGDLSQMIK 116

>SON_MOUSE (Q9QX47) SON protein|
          Length = 2404

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 325 TEVQPEKKPKAAAYTEAPAEDIDDVIELPDVPTKAPERPEATEKTK 188
           TEV PE  P    + E+   D+     LP+ P +AP     +  T+
Sbjct: 310 TEVHPEPSPSTMDFPESSTTDVQ---RLPEQPVEAPSEIADSSMTR 352

>NCA11_MOUSE (P13595) Neural cell adhesion molecule 1, 180 kDa isoform precursor|
           (N-CAM 180) (NCAM-180)
          Length = 1115

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 337 NAPVTEVQPEKKPKAAAYTEAPAEDIDDVIELPDVPTKAP 218
           + P  +  P K   A++ + A A  +  +++L D PT AP
Sbjct: 869 SVPAGQATPSKGVTASSSSPASAPKVAPLVDLSDTPTSAP 908

>IF4F1_YEAST (P39935) Eukaryotic initiation factor 4F subunit p150 (eIF4F p150)|
           (eIF-4F p150) (mRNA cap-binding protein complex subunit
           p150)
          Length = 952

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -2

Query: 367 EXELALESLPNAPVTEVQPEKKPKAAAYTEAPAEDIDDVIELPDVPTKAPERPEATE 197
           E + A+ES P  P  +V+ E +       E    +ID+    P +PTK+ E     E
Sbjct: 330 ETKSAIESAPVPPSEQVKEETE-----VAETEQSNIDESATTPAIPTKSDEAEAEVE 381

>CEAM1_MOUSE (P31809) Carcinoembryonic antigen-related cell adhesion molecule 1|
           precursor (Biliary glycoprotein 1) (BGP-1) (Murine
           hepatitis virus receptor) (MHV-R) (Biliary glycoprotein
           D)
          Length = 521

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 12/50 (24%)
 Frame = -2

Query: 310 EKKPKAAAYTEAPAED----IDDVI--------ELPDVPTKAPERPEATE 197
           E KP  + +  AP+++    +DDV         + P+ PT AP  P ATE
Sbjct: 463 EHKPSTSNHNLAPSDNSPNKVDDVAYTVLNFNSQQPNRPTSAPSSPRATE 512

>YNQ2_PARDE (P29908) Hypothetical 22.9 kDa protein in nqo2 3'region (URF2)|
          Length = 214

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 346 SLPNAPVTEVQPEKKPKAAAYTEAPAEDI 260
           ++P  P+ E +PE KP AAA     A+D+
Sbjct: 109 AMPAEPLVEHRPEPKPAAAAKVARGADDL 137

>M4K1_HUMAN (Q92918) Mitogen-activated protein kinase kinase kinase kinase 1|
           (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 1) (MEK
           kinase kinase 1) (MEKKK 1) (Hematopoietic progenitor
           kinase)
          Length = 833

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -2

Query: 352 LESLPNAPVTEVQPEKKPKAAAYTEAPAEDIDDVIELPDVPTKAPERP 209
           +E+ P A    +QP +  ++++  +  +E  DD  +  D+PT A + P
Sbjct: 347 METRPPANTARLQPPRDLRSSSPRKQLSESSDDDYDDVDIPTPAEDTP 394

>NFH_HUMAN (P12036) Neurofilament triplet H protein (200 kDa neurofilament|
            protein) (Neurofilament heavy polypeptide) (NF-H)
          Length = 1026

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 349  ESLPNAPVTEVQPEKKPKAAAYTEAPAEDIDDVIELPDVPTKAPERPEATEKTK 188
            E+ P    T+ +  KKP+    TEA A++ D  +      +K P +P+A +  K
Sbjct: 955  EAAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTL------SKEPSKPKAEKAEK 1002

>RB3GP_DROME (Q9VQ26) Rab3 GTPase-activating protein catalytic subunit|
          Length = 916

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = +2

Query: 38  ESVHNETYEMTELSNTIKWHDILQLLQTAGLGVPCSAQLHQLCR*WLFQDFCFFCXFRPL 217
           E V  E  E+T L  T   HD++    + G  +  S +LH L R +  + F       P 
Sbjct: 83  ELVRAEAKEITCLQRTSCHHDLMSTGNSFGPPIRSSQELHILARIYGLRRFIVLHPVNPT 142

Query: 218 WRFSRXIRKLN 250
             + R   + N
Sbjct: 143 LNYMRSTSEFN 153

>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 653

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = -2

Query: 349 ESLPNAPVTEVQPEKKPKAAAYTEAPAEDIDDVIELPDVPTKAPERP 209
           E   N P TE QPEKK +       P+E          V T +   P
Sbjct: 31  EESSNTPSTETQPEKKAEEPEAAAEPSESTSTPTNASSVATPSGTAP 77

>NACAM_MOUSE (P70670) Nascent polypeptide-associated complex alpha subunit,|
            muscle-specific form (Alpha-NAC, muscle-specific form)
          Length = 2187

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 340  PNAPVTEVQPEKKPKAAAYTEAPAEDIDDVIELPDVPTKAPERP 209
            P      + P++ PK AA  E PA   + V  +P   + +P  P
Sbjct: 1218 PKENSATLPPKRSPKTAAPKETPATSSEGVTAVPSEISPSPPTP 1261

>SEC16_SCHPO (O14029) Multidomain vesicle coat protein|
          Length = 1995

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = -2

Query: 367  EXELALESLPNAPVTEVQPEKKPKAAAYTEAPAEDIDDVIELPDVPTKAPERPEATEK 194
            E  + L S+PNAP +     K P A+       + ++D+++    PT    R + +++
Sbjct: 1932 ETAVPLSSMPNAPPSVASNAKLPPAS--NNRKVDPLEDILQAMPPPTTRKARGKTSKR 1987

>NIFN_RHISN (P55674) Nitrogenase iron-molybdenum cofactor biosynthesis protein|
           nifN
          Length = 469

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 191 KSLGRATTCIAGGAELNRELQVLQFAGAVKY 99
           + LGRA  CIA G  + R  ++LQ    V Y
Sbjct: 249 QELGRAVRCIAIGEHMRRPAELLQTLTGVPY 279

>SSRA_RABIT (P53815) Translocon-associated protein alpha subunit precursor|
           (TRAP-alpha) (Signal sequence receptor alpha subunit)
           (SSR-alpha)
          Length = 286

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 26  NSISESVHNETYEMTELSNTIKWHDILQLLQTAGLGVPCSAQLHQL 163
           N   ++V N+T  + E  + +    I   +  AGLG+     LHQL
Sbjct: 183 NVFQDAVFNQTVTVIEREDGLDGQTIFMYMSLAGLGLLVVVGLHQL 228


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,582,122
Number of Sequences: 219361
Number of extensions: 547254
Number of successful extensions: 2253
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2246
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)