ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags29d21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463663.1| Oryza sativa (japonica cultivar-group), predic... 101 3e-18
2dbj|AB117999.1| Oryza sativa (japonica cultivar-group) bip112 mR... 101 3e-18
3dbj|AK067886.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
4gb|AY107984.1| Zea mays PCO090168 mRNA sequence 101 3e-18
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
6dbj|AP004223.2| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
7gb|AY110624.1| Zea mays CL9618_2 mRNA sequence 54 6e-04
8ref|NM_114730.1| Arabidopsis thaliana unknown protein AT3G48710 ... 46 0.14
9gb|AC121611.3| Mus musculus BAC clone RP23-330I2 from chromosome... 46 0.14
10gb|AY084914.1| Arabidopsis thaliana clone 121300 mRNA, complete ... 46 0.14
11gb|AC103388.6| Mus musculus chromosome 7, clone RP24-403B15, com... 42 2.3
12gb|AC161930.7| Mus musculus chromosome 7, clone RP23-157P17, com... 42 2.3
13gb|AC079354.4| Homo sapiens BAC clone RP11-1145F21 from 2, compl... 42 2.3
14gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 2.3
15gb|AY123253.3| Klebsiella pneumoniae plasmid pRMH760, partial se... 40 8.9
16ref|NM_125750.3| Arabidopsis thaliana unknown protein AT5G63550 ... 40 8.9
17gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 8.9
18gb|AC102751.14| Mus musculus chromosome 19, clone RP24-531N3, co... 40 8.9
19gb|AE009191.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 8.9
20gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118... 40 8.9
21ref|NG_001333.1| Homo sapiens T cell receptor beta locus (TRB@) ... 40 8.9
22gb|AC138618.5| Mus musculus BAC clone RP23-335D4 from chromosome... 40 8.9
23ref|XM_380749.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 8.9
24ref|XM_804615.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 8.9
25emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete ch... 40 8.9
26gb|AC123834.4| Mus musculus BAC clone RP24-132N9 from chromosome... 40 8.9
27gb|AC117550.8| Mus musculus chromosome 1, clone RP24-571N3, comp... 40 8.9
28emb|BX927413.10| Zebrafish DNA sequence from clone DKEY-29D8 in ... 40 8.9
29emb|BX883045.1| Rattus norvegicus chromosome 20, major histocomp... 40 8.9
30emb|AL445065.1|TACID3 Thermoplasma acidophilum complete genome; ... 40 8.9
31gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 8.9
32gb|AC093852.3| Homo sapiens BAC clone RP11-500G9 from 4, complet... 40 8.9
33gb|AC008860.7| Homo sapiens chromosome 5 clone CTD-2185A1, compl... 40 8.9
34gb|AC016612.6| Homo sapiens chromosome 5 clone CTD-2197M16, comp... 40 8.9
35emb|BX936387.9| Zebrafish DNA sequence from clone CH211-245M11 i... 40 8.9
36gb|AC159966.5| Mus musculus chromosome 1, clone RP23-287P12, com... 40 8.9
37gb|AC158529.2| Mus musculus BAC clone RP23-263H3 from chromosome... 40 8.9
38emb|BX890624.9| Zebrafish DNA sequence from clone DKEY-9I9, comp... 40 8.9
39gb|AF288464.2|AF288464 Sinorhizobium meliloti response regulator... 40 8.9
40gb|BT005478.1| Arabidopsis thaliana clone U50052 unknown protein... 40 8.9
41gb|BT004149.1| Arabidopsis thaliana clone RAFL15-28-O07 (R50052)... 40 8.9
42gb|AC112204.2| Homo sapiens chromosome 5 clone RP11-79C6, comple... 40 8.9
43gb|AC011893.7| Homo sapiens BAC clone RP11-34L23 from 2, complet... 40 8.9
44ref|XM_319682.2| Anopheles gambiae str. PEST ENSANGP00000021424 ... 40 8.9
45gb|AC147267.6| Mus musculus BAC clone RP24-263E13 from chromosom... 40 8.9
46gb|U66060.1| Human germline T-cell receptor beta chain TCRBV13S1... 40 8.9
47emb|AL138974.4|CNS01DWW Human chromosome 14 DNA sequence BAC C-2... 40 8.9
48gb|M24940.1|PDUMERR Plasmid pDU1358 (from Serratia marcescens) m... 40 8.9
49emb|AL135878.4|CNS01DVK Human chromosome 14 DNA sequence BAC R-1... 40 8.9 
>ref|XM_463663.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1671

 Score =  101 bits (51), Expect = 3e-18
 Identities = 150/183 (81%)
 Strand = Plus / Minus

                                                                        
Query: 448  atcatcggacatgctgttgatcacttcctctatgatgcgcttcacctccgacttcctatc 507
            |||||| ||||| || || || |||||||| || ||| | |||||||| || ||||||||
Sbjct: 1578 atcatcagacatactatttattacttcctcaataatgtgtttcacctctgatttcctatc 1519

                                                                        
Query: 508  catgaggtccatgtcaaagtggtctcctaatttcttgagaatgtcagccagagttgccgt 567
            |||||||||||| | ||| ||    ||||||| |   ||||| || ||||  || |||||
Sbjct: 1518 catgaggtccatcttaaaatgagtacctaattgccgaagaatatctgccaatgtcgccgt 1459

                                                                        
Query: 568  attgaagtccacttctttcaatatgttactaacaacagcatgcaactgtttagtggttgg 627
            ||||||||| ||||| |||||||||| ||||||||||||||||| || || |||||||||
Sbjct: 1458 attgaagtcaacttccttcaatatgtcactaacaacagcatgcagctcttcagtggttgg 1399

               
Query: 628  ggc 630
            |||
Sbjct: 1398 ggc 1396
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>dbj|AB117999.1| Oryza sativa (japonica cultivar-group) bip112 mRNA for BRI1-KD
           interacting protein 112, partial cds
          Length = 1204

 Score =  101 bits (51), Expect = 3e-18
 Identities = 150/183 (81%)
 Strand = Plus / Minus

                                                                       
Query: 448 atcatcggacatgctgttgatcacttcctctatgatgcgcttcacctccgacttcctatc 507
           |||||| ||||| || || || |||||||| || ||| | |||||||| || ||||||||
Sbjct: 751 atcatcagacatactatttattacttcctcaataatgtgtttcacctctgatttcctatc 692

                                                                       
Query: 508 catgaggtccatgtcaaagtggtctcctaatttcttgagaatgtcagccagagttgccgt 567
           |||||||||||| | ||| ||    ||||||| |   ||||| || ||||  || |||||
Sbjct: 691 catgaggtccatcttaaaatgagtacctaattgccgaagaatatctgccaatgtcgccgt 632

                                                                       
Query: 568 attgaagtccacttctttcaatatgttactaacaacagcatgcaactgtttagtggttgg 627
           ||||||||| ||||| |||||||||| ||||||||||||||||| || || |||||||||
Sbjct: 631 attgaagtcaacttccttcaatatgtcactaacaacagcatgcagctcttcagtggttgg 572

              
Query: 628 ggc 630
           |||
Sbjct: 571 ggc 569



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 119  acagctattgtacatgaccagcaacta 145
            |||||||||||||||||||||||||||
Sbjct: 1079 acagctattgtacatgaccagcaacta 1053



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 249 ttgttgcggtgccatcattgtacag 273
           ||||||||||||| |||||||||||
Sbjct: 958 ttgttgcggtgccctcattgtacag 934



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 11   actgttttacatggataaaatgcaaggaacag 42
            |||||||||||||||| ||||| |||||||||
Sbjct: 1169 actgttttacatggat-aaatggaaggaacag 1139



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 63   ctgcaaattacagtcagggctagctacctaag 94
            ||||| |||||||||||| |||||||||||||
Sbjct: 1125 ctgcatattacagtcagg-ctagctacctaag 1095
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>dbj|AK067886.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128L13, full
            insert sequence
          Length = 1962

 Score =  101 bits (51), Expect = 3e-18
 Identities = 150/183 (81%)
 Strand = Plus / Minus

                                                                        
Query: 448  atcatcggacatgctgttgatcacttcctctatgatgcgcttcacctccgacttcctatc 507
            |||||| ||||| || || || |||||||| || ||| | |||||||| || ||||||||
Sbjct: 1536 atcatcagacatactatttattacttcctcaataatgtgtttcacctctgatttcctatc 1477

                                                                        
Query: 508  catgaggtccatgtcaaagtggtctcctaatttcttgagaatgtcagccagagttgccgt 567
            |||||||||||| | ||| ||    ||||||| |   ||||| || ||||  || |||||
Sbjct: 1476 catgaggtccatcttaaaatgagtacctaattgccgaagaatatctgccaatgtcgccgt 1417

                                                                        
Query: 568  attgaagtccacttctttcaatatgttactaacaacagcatgcaactgtttagtggttgg 627
            ||||||||| ||||| |||||||||| ||||||||||||||||| || || |||||||||
Sbjct: 1416 attgaagtcaacttccttcaatatgtcactaacaacagcatgcagctcttcagtggttgg 1357

               
Query: 628  ggc 630
            |||
Sbjct: 1356 ggc 1354



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 119  acagctattgtacatgaccagcaacta 145
            |||||||||||||||||||||||||||
Sbjct: 1864 acagctattgtacatgaccagcaacta 1838



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 249  ttgttgcggtgccatcattgtacag 273
            ||||||||||||| |||||||||||
Sbjct: 1743 ttgttgcggtgccctcattgtacag 1719



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 11   actgttttacatggataaaatgcaaggaacag 42
            |||||||||||||||| ||||| |||||||||
Sbjct: 1954 actgttttacatggat-aaatggaaggaacag 1924



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 63   ctgcaaattacagtcagggctagctacctaag 94
            ||||| |||||||||||| |||||||||||||
Sbjct: 1910 ctgcatattacagtcagg-ctagctacctaag 1880
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>gb|AY107984.1| Zea mays PCO090168 mRNA sequence
          Length = 1298

 Score =  101 bits (51), Expect = 3e-18
 Identities = 129/155 (83%)
 Strand = Plus / Minus

                                                                       
Query: 476 tctatgatgcgcttcacctccgacttcctatccatgaggtccatgtcaaagtggtctcct 535
           ||||| ||||||||||| || |  || || |||||||||||||| ||||| |||   |||
Sbjct: 839 tctataatgcgcttcacttctgcttttctgtccatgaggtccatttcaaaatgggtccct 780

                                                                       
Query: 536 aatttcttgagaatgtcagccagagttgccgtattgaagtccacttctttcaatatgtta 595
           |||| | ||||||| ||||||| |||||| || |||||||| ||||| ||||| |||  |
Sbjct: 779 aattgcctgagaatatcagccaaagttgctgtgttgaagtcaacttccttcaaaatgcca 720

                                              
Query: 596 ctaacaacagcatgcaactgtttagtggttggggc 630
           |||||||||||||| | ||||| ||||||||||||
Sbjct: 719 ctaacaacagcatgaagctgttcagtggttggggc 685



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 63   ctgcaaattacagtcagggctagctacctaag 94
            ||||| |||||||||||| |||||||||||||
Sbjct: 1224 ctgcatattacagtcagg-ctagctacctaag 1194
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                            
Query: 564      ccgtattgaagtccacttctttcaatatgttactaacaacagcatgcaactgtttagtgg 623
                ||||||||||||| ||||| |||||||||| ||||||||||||||||| || || |||||
Sbjct: 40499109 ccgtattgaagtcaacttccttcaatatgtcactaacaacagcatgcagctcttcagtgg 40499050

                       
Query: 624      ttggggc 630
                |||||||
Sbjct: 40499049 ttggggc 40499043



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                            
Query: 448      atcatcggacatgctgttgatcacttcctctatgatgcgcttcacctccgacttcctatc 507
                |||||| ||||| || || || |||||||| || ||| | |||||||| || ||||||||
Sbjct: 40499431 atcatcagacatactatttattacttcctcaataatgtgtttcacctctgatttcctatc 40499372

                            
Query: 508      catgaggtccat 519
                ||||||||||||
Sbjct: 40499371 catgaggtccat 40499360



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                           
Query: 119      acagctattgtacatgaccagcaacta 145
                |||||||||||||||||||||||||||
Sbjct: 40499759 acagctattgtacatgaccagcaacta 40499733



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 249      ttgttgcggtgccatcattgtacag 273
                ||||||||||||| |||||||||||
Sbjct: 40499638 ttgttgcggtgccctcattgtacag 40499614



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                                
Query: 11       actgttttacatggataaaatgcaaggaacag 42
                |||||||||||||||| ||||| |||||||||
Sbjct: 40499849 actgttttacatggat-aaatggaaggaacag 40499819



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                                
Query: 63       ctgcaaattacagtcagggctagctacctaag 94
                ||||| |||||||||||| |||||||||||||
Sbjct: 40499805 ctgcatattacagtcagg-ctagctacctaag 40499775
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>dbj|AP004223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1033B05
          Length = 138882

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                         
Query: 564   ccgtattgaagtccacttctttcaatatgttactaacaacagcatgcaactgtttagtgg 623
             ||||||||||||| ||||| |||||||||| ||||||||||||||||| || || |||||
Sbjct: 60733 ccgtattgaagtcaacttccttcaatatgtcactaacaacagcatgcagctcttcagtgg 60674

                    
Query: 624   ttggggc 630
             |||||||
Sbjct: 60673 ttggggc 60667



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                         
Query: 448   atcatcggacatgctgttgatcacttcctctatgatgcgcttcacctccgacttcctatc 507
             |||||| ||||| || || || |||||||| || ||| | |||||||| || ||||||||
Sbjct: 61055 atcatcagacatactatttattacttcctcaataatgtgtttcacctctgatttcctatc 60996

                         
Query: 508   catgaggtccat 519
             ||||||||||||
Sbjct: 60995 catgaggtccat 60984



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                        
Query: 119   acagctattgtacatgaccagcaacta 145
             |||||||||||||||||||||||||||
Sbjct: 61383 acagctattgtacatgaccagcaacta 61357



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 249   ttgttgcggtgccatcattgtacag 273
             ||||||||||||| |||||||||||
Sbjct: 61262 ttgttgcggtgccctcattgtacag 61238



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 11    actgttttacatggataaaatgcaaggaacag 42
             |||||||||||||||| ||||| |||||||||
Sbjct: 61473 actgttttacatggat-aaatggaaggaacag 61443



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 63    ctgcaaattacagtcagggctagctacctaag 94
             ||||| |||||||||||| |||||||||||||
Sbjct: 61429 ctgcatattacagtcagg-ctagctacctaag 61399
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>gb|AY110624.1| Zea mays CL9618_2 mRNA sequence
          Length = 633

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 131/163 (80%), Gaps = 2/163 (1%)
 Strand = Plus / Plus

                                                                       
Query: 448 atcatcggacatgctgttgatcacttcctctatgatgcgcttcacctccgacttcctatc 507
           |||||| |||||||| || || || || ||||||||||| ||||| || |  || || ||
Sbjct: 470 atcatcagacatgctatttattacatcttctatgatgcgtttcacttctgcttttctgtc 529

                                                                       
Query: 508 catgaggtccatgtcaaagtggtctcctaatttcttgagaat-gtcagccagagttgccg 566
           |||||||||||| || || |||   ||||| || ||||||||  ||||||| |||||| |
Sbjct: 530 catgaggtccatttcgaaatgggtccctaa-ttgttgagaatattcagccaaagttgctg 588

                                                      
Query: 567 tattgaagtccacttctttcaatatgttactaacaacagcatg 609
           | |||||||| ||||| ||||  ||| | ||||||||||||||
Sbjct: 589 tgttgaagtcaacttccttcagaatgctgctaacaacagcatg 631
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>ref|NM_114730.1| Arabidopsis thaliana unknown protein AT3G48710 mRNA, complete cds
          Length = 1629

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 557  agagttgccgtattgaagtccacttctttca 587
            |||||||||||||||||||| ||||| ||||
Sbjct: 1270 agagttgccgtattgaagtctacttccttca 1240
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>gb|AC121611.3| Mus musculus BAC clone RP23-330I2 from chromosome 6, complete sequence
          Length = 197889

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 143   ctaagagactacaggtcaataac 165
             |||||||||||||||||||||||
Sbjct: 35735 ctaagagactacaggtcaataac 35713
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>gb|AY084914.1| Arabidopsis thaliana clone 121300 mRNA, complete sequence
          Length = 1629

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 557  agagttgccgtattgaagtccacttctttca 587
            |||||||||||||||||||| ||||| ||||
Sbjct: 1270 agagttgccgtattgaagtctacttccttca 1240
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>gb|AC103388.6| Mus musculus chromosome 7, clone RP24-403B15, complete sequence
          Length = 164394

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 352    tttctcatccttctcttcatc 372
              |||||||||||||||||||||
Sbjct: 161015 tttctcatccttctcttcatc 161035
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>gb|AC161930.7| Mus musculus chromosome 7, clone RP23-157P17, complete sequence
          Length = 212109

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 352    tttctcatccttctcttcatc 372
              |||||||||||||||||||||
Sbjct: 211249 tttctcatccttctcttcatc 211229
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>gb|AC079354.4| Homo sapiens BAC clone RP11-1145F21 from 2, complete sequence
          Length = 162554

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 92    aagaaagaaacatagtcatat 112
             |||||||||||||||||||||
Sbjct: 33847 aagaaagaaacatagtcatat 33827
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 10     aactgttttacatggataaaa 30
              |||||||||||||||||||||
Sbjct: 113533 aactgttttacatggataaaa 113513
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>gb|AY123253.3| Klebsiella pneumoniae plasmid pRMH760, partial sequence
          Length = 45325

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 271   caggcgaaaaacagcgccagcaac 294
             ||||||||||||||||||| ||||
Sbjct: 43203 caggcgaaaaacagcgccaccaac 43226
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>ref|NM_125750.3| Arabidopsis thaliana unknown protein AT5G63550 mRNA, complete cds
          Length = 1871

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 560  gttgccgtattgaagtccacttctttca 587
            ||||||||||||||||| ||||| ||||
Sbjct: 1386 gttgccgtattgaagtctacttccttca 1359
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 275     cgaaaaacagcgccagcaac 294
               ||||||||||||||||||||
Sbjct: 4989743 cgaaaaacagcgccagcaac 4989762
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>gb|AC102751.14| Mus musculus chromosome 19, clone RP24-531N3, complete sequence
          Length = 178150

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 630    ccaccttgccttttcctttatttt 653
              |||||||||||| |||||||||||
Sbjct: 120062 ccaccttgccttgtcctttatttt 120039
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>gb|AE009191.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 217
            of 256 of the complete sequence
          Length = 10816

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 198  gccaccaaatggttaacaaa 217
            ||||||||||||||||||||
Sbjct: 1803 gccaccaaatggttaacaaa 1784
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>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome
          Length = 1827111

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 569     ttgaagtccacttctttcaa 588
               ||||||||||||||||||||
Sbjct: 1158807 ttgaagtccacttctttcaa 1158826
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>ref|NG_001333.1| Homo sapiens T cell receptor beta locus (TRB@) on chromosome 7
          Length = 684973

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     gcaaggaacagaacaaggat 51
              ||||||||||||||||||||
Sbjct: 451830 gcaaggaacagaacaaggat 451811
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>gb|AC138618.5| Mus musculus BAC clone RP23-335D4 from chromosome 7, complete sequence
          Length = 189419

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 348   cttatttctcatccttctcttcat 371
             |||||||||| |||||||||||||
Sbjct: 87215 cttatttctcttccttctcttcat 87192
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>ref|XM_380749.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00573.1)
           partial mRNA
          Length = 1998

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 367 ttcatcaggatcctcctttg 386
           ||||||||||||||||||||
Sbjct: 941 ttcatcaggatcctcctttg 960
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>ref|XM_804615.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053506865.70) partial mRNA
          Length = 4404

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 262  atcattgtacaggcgaaaaa 281
            ||||||||||||||||||||
Sbjct: 2211 atcattgtacaggcgaaaaa 2230
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>emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/12
          Length = 340900

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    gccaccaaatggttaacaaa 217
              ||||||||||||||||||||
Sbjct: 216248 gccaccaaatggttaacaaa 216229
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>gb|AC123834.4| Mus musculus BAC clone RP24-132N9 from chromosome 13, complete sequence
          Length = 153028

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     cctaagaaagaaacatagtc 108
              ||||||||||||||||||||
Sbjct: 126279 cctaagaaagaaacatagtc 126260
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>gb|AC117550.8| Mus musculus chromosome 1, clone RP24-571N3, complete sequence
          Length = 156349

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 297   agaagaacactcgacaaatacagg 320
             |||||||||||| |||||||||||
Sbjct: 72928 agaagaacactccacaaatacagg 72951
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>emb|BX927413.10| Zebrafish DNA sequence from clone DKEY-29D8 in linkage group 2,
             complete sequence
          Length = 96453

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 524   aagtggtctcctaatttctt 543
             ||||||||||||||||||||
Sbjct: 83099 aagtggtctcctaatttctt 83080
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>emb|BX883045.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 4/11
          Length = 346406

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    cactgcccaggccaccaaaa 245
              ||||||||||||||||||||
Sbjct: 192383 cactgcccaggccaccaaaa 192364
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>emb|AL445065.1|TACID3 Thermoplasma acidophilum complete genome; segment 3/5
          Length = 316900

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    ttttacatggataaaatgca 34
             ||||||||||||||||||||
Sbjct: 82422 ttttacatggataaaatgca 82403
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 198     gccaccaaatggttaacaaa 217
               ||||||||||||||||||||
Sbjct: 2404851 gccaccaaatggttaacaaa 2404832
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>gb|AC093852.3| Homo sapiens BAC clone RP11-500G9 from 4, complete sequence
          Length = 158901

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 97   agaaacatagtcatatgacc 116
            ||||||||||||||||||||
Sbjct: 9623 agaaacatagtcatatgacc 9642
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>gb|AC008860.7| Homo sapiens chromosome 5 clone CTD-2185A1, complete sequence
          Length = 105885

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    ttacatggataaaatgcaag 36
             ||||||||||||||||||||
Sbjct: 35731 ttacatggataaaatgcaag 35750
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>gb|AC016612.6| Homo sapiens chromosome 5 clone CTD-2197M16, complete sequence
          Length = 179513

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     ttacatggataaaatgcaag 36
              ||||||||||||||||||||
Sbjct: 139112 ttacatggataaaatgcaag 139131
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>emb|BX936387.9| Zebrafish DNA sequence from clone CH211-245M11 in linkage group 18,
             complete sequence
          Length = 71220

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    aagtatgcatgctgcaaatt 71
             ||||||||||||||||||||
Sbjct: 18906 aagtatgcatgctgcaaatt 18925
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>gb|AC159966.5| Mus musculus chromosome 1, clone RP23-287P12, complete sequence
          Length = 208142

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 297    agaagaacactcgacaaatacagg 320
              |||||||||||| |||||||||||
Sbjct: 207095 agaagaacactccacaaatacagg 207118
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>gb|AC158529.2| Mus musculus BAC clone RP23-263H3 from chromosome 13, complete sequence
          Length = 172769

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    cctaagaaagaaacatagtc 108
             ||||||||||||||||||||
Sbjct: 10542 cctaagaaagaaacatagtc 10523
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>emb|BX890624.9| Zebrafish DNA sequence from clone DKEY-9I9, complete sequence
          Length = 152103

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    aagtatgcatgctgcaaatt 71
             ||||||||||||||||||||
Sbjct: 97698 aagtatgcatgctgcaaatt 97679
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>gb|AF288464.2|AF288464 Sinorhizobium meliloti response regulator CtrA (ctrA) gene, complete
            cds
          Length = 4556

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 198  gccaccaaatggttaacaaa 217
            ||||||||||||||||||||
Sbjct: 3186 gccaccaaatggttaacaaa 3167
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>gb|BT005478.1| Arabidopsis thaliana clone U50052 unknown protein (At5g63550) mRNA,
            complete cds
          Length = 1624

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 560  gttgccgtattgaagtccacttctttca 587
            ||||||||||||||||| ||||| ||||
Sbjct: 1346 gttgccgtattgaagtctacttccttca 1319
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>gb|BT004149.1| Arabidopsis thaliana clone RAFL15-28-O07 (R50052) unknown protein
            (At5g63550) mRNA, complete cds
          Length = 1928

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 560  gttgccgtattgaagtccacttctttca 587
            ||||||||||||||||| ||||| ||||
Sbjct: 1427 gttgccgtattgaagtctacttccttca 1400
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>gb|AC112204.2| Homo sapiens chromosome 5 clone RP11-79C6, complete sequence
          Length = 165304

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     ttacatggataaaatgcaag 36
              ||||||||||||||||||||
Sbjct: 154894 ttacatggataaaatgcaag 154875
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>gb|AC011893.7| Homo sapiens BAC clone RP11-34L23 from 2, complete sequence
          Length = 177901

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     atgcatgctgcaaattacag 75
              ||||||||||||||||||||
Sbjct: 123392 atgcatgctgcaaattacag 123411
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>ref|XM_319682.2| Anopheles gambiae str. PEST ENSANGP00000021424
           (ENSANGG00000018935), partial mRNA
          Length = 2243

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 481 gatgcgcttcacctccgact 500
           ||||||||||||||||||||
Sbjct: 507 gatgcgcttcacctccgact 488
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>gb|AC147267.6| Mus musculus BAC clone RP24-263E13 from chromosome 3, complete sequence
          Length = 155979

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    aggaacagaacaaggataag 54
             ||||||||||||||||||||
Sbjct: 57922 aggaacagaacaaggataag 57903
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>gb|U66060.1| Human germline T-cell receptor beta chain TCRBV13S1, TCRBV6S8A2T,
              TCRBV5S6A3N2T, TCRBV13S6A2T, TCRBV6S9P, TCRBV5S3A2T,
              TCRBV13S8P, TCRBV6S3A1N1T, TCRBV5S2, TCRBV6S6A2T,
              TCRBV5S7P, TCRBV13S4, TCRBV6S2A1N1T, TCRBV5S4A2T,
              TCRBV6S4A1, TCRBV23S1A2T, TCRBV12S1A1N2, TCRBV21S2A2,
              TCRBV8S1, TCRBV8S2A1T, TCRBV8S3, TCRBV16S1A1N1,
              TCRBV24S1A3T, TCRBV25S1A2PT, TCRBV26S1P, TCRBV18S1,
              TCRBV17S1A1T, TCRBV2S1, TCRBV10S1P genes from bases 257519
              to 472940 (section 2 of 3)
          Length = 215422

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     gcaaggaacagaacaaggat 51
              ||||||||||||||||||||
Sbjct: 194312 gcaaggaacagaacaaggat 194293
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>emb|AL138974.4|CNS01DWW Human chromosome 14 DNA sequence BAC C-2384A14 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 88522

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 528   ggtctcctaatttcttgagaatgt 551
             ||||||||| ||||||||||||||
Sbjct: 85769 ggtctcctattttcttgagaatgt 85792
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>gb|M24940.1|PDUMERR Plasmid pDU1358 (from Serratia marcescens) mercury resistance protein
            genes merR, merP and merT, complete cds, and merA gene,
            5' end
          Length = 2923

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 271  caggcgaaaaacagcgccagcaac 294
            ||||||||||||||||||| ||||
Sbjct: 1379 caggcgaaaaacagcgccaccaac 1356
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>emb|AL135878.4|CNS01DVK Human chromosome 14 DNA sequence BAC R-148E17 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 144554

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 528   ggtctcctaatttcttgagaatgt 551
             ||||||||| ||||||||||||||
Sbjct: 90196 ggtctcctattttcttgagaatgt 90173


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,601,890
Number of Sequences: 3902068
Number of extensions: 5601890
Number of successful extensions: 127565
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127324
Number of HSP's gapped (non-prelim): 236
length of query: 654
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 631
effective length of database: 17,143,297,704
effective search space: 10817420851224
effective search space used: 10817420851224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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