>gb|AY111604.1| Zea mays CL11280_1 mRNA sequence
          Length = 517

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                          
Query: 180 atcagtgcacggagtggcagcagatgaagggcatccacggctgcttc 226
           ||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 277 atcagcgcacggagtggcagcagatgaacggcatccacggctgcttc 323

>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBb0004A05, complete sequence
          Length = 157913

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                    
Query: 183   agtgcacggagtggcagcagatgaagggcatccacggctgcttcctcactttgga 237
             ||||||| ||||| ||||| ||||| |||||||| |||||||||||  |||||||
Sbjct: 63938 agtgcaccgagtgacagcaaatgaacggcatccatggctgcttccttgctttgga 63992

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                       
Query: 183      agtgcacggagtggcagcagatgaagggcatccacggctgcttcctcactttgga 237
                ||||||| ||||| ||||| ||||| |||||||| |||||||||||  |||||||
Sbjct: 19132918 agtgcaccgagtgacagcaaatgaacggcatccatggctgcttccttgctttgga 19132972

>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 242     ttgtcgacgttgttgctgtcgt 263
               ||||||||||||||||||||||
Sbjct: 2000655 ttgtcgacgttgttgctgtcgt 2000634

>gb|AC134382.13| Mus musculus strain C57BL/6J clone rp23-167l1, complete sequence
          Length = 194086

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 209    ggcatccacggctgcttcctca 230
              ||||||||||||||||||||||
Sbjct: 165722 ggcatccacggctgcttcctca 165701



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    ggcatccacggctgcttcct 228
              ||||||||||||||||||||
Sbjct: 164942 ggcatccacggctgcttcct 164923

>gb|AC007961.32| Mus musculus strain 129S6/SvEvTac clone rp21-594l4 map 10, complete
             sequence
          Length = 180585

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 209   ggcatccacggctgcttcctca 230
             ||||||||||||||||||||||
Sbjct: 12653 ggcatccacggctgcttcctca 12632



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   ggcatccacggctgcttcct 228
             ||||||||||||||||||||
Sbjct: 11873 ggcatccacggctgcttcct 11854

>gb|AC005302.70| Mus musculus strain 129S6/SvEvTac chromosome 10 clone rp21-481n4,
             complete sequence
          Length = 204653

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 209   ggcatccacggctgcttcctca 230
             ||||||||||||||||||||||
Sbjct: 32949 ggcatccacggctgcttcctca 32970



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   ggcatccacggctgcttcct 228
             ||||||||||||||||||||
Sbjct: 33729 ggcatccacggctgcttcct 33748

>dbj|AK107247.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-F11, full
            insert sequence
          Length = 1510

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 242  ttgtcgacgttgttgctgtcg 262
            |||||||||||||||||||||
Sbjct: 1098 ttgtcgacgttgttgctgtcg 1078

>gb|AC160972.4| Mus musculus BAC clone RP24-571D21 from chromosome 12, complete sequence
          Length = 184921

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    tccacggctgcttcctcact 232
              ||||||||||||||||||||
Sbjct: 102388 tccacggctgcttcctcact 102369

>emb|AL354814.19| Human DNA sequence from clone RP11-94N9 on chromosome 13q13.3-14.3
             Contains a guanine nucleotide binding protein (G protein),
             gamma 5 (GNG5) pseudogene, complete sequence
          Length = 70126

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    catatgtttgcaaggcataa 68
             ||||||||||||||||||||
Sbjct: 45720 catatgtttgcaaggcataa 45739

>gb|AC004667.3| Arabidopsis thaliana chromosome 2 clone T4C15 map ve016, complete
            sequence
          Length = 91863

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 18   atctacacgaacacgacagtagtt 41
            |||||||||||||||||| |||||
Sbjct: 6023 atctacacgaacacgacaatagtt 6000

>gb|AC105032.4| Homo sapiens chromosome 18, clone CTD-2272L2, complete sequence
          Length = 95865

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   ctcactttggacctcttgtc 246
             ||||||||||||||||||||
Sbjct: 35148 ctcactttggacctcttgtc 35129

>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 161   acggagaatgaatggcggcatcag 184
             ||||| ||||||||||||||||||
Sbjct: 45530 acggataatgaatggcggcatcag 45553

>gb|AF250200.1|AF250200 Human T-cell lymphotropic virus type 1 envelope glycoprotein (env)
            gene, partial cds
          Length = 1466

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 152  tcgtagctgacggagaatgaatgg 175
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381

>emb|BX005049.6| Zebrafish DNA sequence from clone DKEY-89O18 in linkage group 24,
              complete sequence
          Length = 251421

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 213    tccacggctgcttcctcactttgg 236
              ||||| ||||||||||||||||||
Sbjct: 132571 tccactgctgcttcctcactttgg 132594

>emb|BX296533.9| Zebrafish DNA sequence from clone DKEY-54O1 in linkage group 5,
             complete sequence
          Length = 200047

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 213   tccacggctgcttcctcactttgg 236
             ||||| ||||||||||||||||||
Sbjct: 67427 tccactgctgcttcctcactttgg 67450

>gb|AC163357.5| Mus musculus BAC clone RP23-3K10 from chromosome 12, complete sequence
          Length = 236266

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    tccacggctgcttcctcact 232
              ||||||||||||||||||||
Sbjct: 234926 tccacggctgcttcctcact 234907

>gb|AY604930.1| Human T-lymphotropic virus 1 isolate 2917 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 152  tcgtagctgacggagaatgaatgg 175
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381

>gb|AY604929.1| Human T-lymphotropic virus 1 isolate 2903 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 152  tcgtagctgacggagaatgaatgg 175
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381

>gb|AY604928.1| Human T-lymphotropic virus 1 isolate 2902 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 152  tcgtagctgacggagaatgaatgg 175
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381

>gb|AY604926.1| Human T-lymphotropic virus 1 isolate 2899 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 152  tcgtagctgacggagaatgaatgg 175
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381

>gb|AY604918.1| Human T-lymphotropic virus 1 isolate 2808 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 152  tcgtagctgacggagaatgaatgg 175
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381

>gb|AY604917.1| Human T-lymphotropic virus 1 isolate 2806 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 152  tcgtagctgacggagaatgaatgg 175
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381

>gb|AY604908.1| Human T-lymphotropic virus 1 isolate 2551 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 152  tcgtagctgacggagaatgaatgg 175
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381

>gb|AY604906.1| Human T-lymphotropic virus 1 isolate 2515 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 152  tcgtagctgacggagaatgaatgg 175
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381

>gb|AY604903.1| Human T-lymphotropic virus 1 isolate 2504 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 152  tcgtagctgacggagaatgaatgg 175
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381

>gb|AY604902.1| Human T-lymphotropic virus 1 isolate 2387 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 152  tcgtagctgacggagaatgaatgg 175
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381

>gb|AY604900.1| Human T-lymphotropic virus 1 isolate 2371-2 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 152  tcgtagctgacggagaatgaatgg 175
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381

>gb|AY604899.1| Human T-lymphotropic virus 1 isolate 2371-1 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 152  tcgtagctgacggagaatgaatgg 175
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381

>gb|AY604897.1| Human T-lymphotropic virus 1 isolate 2307 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 152  tcgtagctgacggagaatgaatgg 175
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,714,114
Number of Sequences: 3902068
Number of extensions: 2714114
Number of successful extensions: 54159
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54087
Number of HSP's gapped (non-prelim): 72
length of query: 409
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 387
effective length of database: 17,147,199,772
effective search space: 6635966311764
effective search space used: 6635966311764
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)