| Clone Name | rbaal1j10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 432 bits (218), Expect = e-118 Identities = 397/456 (87%), Gaps = 3/456 (0%) Strand = Plus / Minus Query: 262 tcatatggcgtatatccggtctatctcggaatctga---ctccgagttgtggttccatga 318 |||||||||||||||||||||||||||||| ||||| ||| ||||| || | |||||| Sbjct: 9579958 tcatatggcgtatatccggtctatctcggagtctgaaaactctgagttttgctgccatga 9579899 Query: 319 gtttgagccgctccgccttgttgatttcaccttcttcctaattgaacgtgtgcgcttgga 378 ||||||||| |||| |||||| ||||||||||||||||| || ||||||||||||||||| Sbjct: 9579898 gtttgagccactcctccttgtagatttcaccttcttcctgatcgaacgtgtgcgcttgga 9579839 Query: 379 cttcaccacatagtatgtcatcgtaccgagcacgccagccatgatcaccccaccaatgag 438 ||||||||||||| ||||| ||||| ||||| |||||||||||||| || || || || Sbjct: 9579838 tctcaccacatagtaggtcattgtaccaagcacaccagccatgatcactccgccgattag 9579779 Query: 439 ggtcaccagaagcgccgcccacctgaagtgccgacccaccactatgtaagaggaggatat 498 |||||||||||||||||||||| ||||||| || || || || |||| ||| ||||| Sbjct: 9579778 ggtcaccagaagcgccgcccactggaagtgcttcccaactacaatataagcggatgatat 9579719 Query: 499 gaatgccaccgtggtgcataccgaagccagccacatcaacttgttgataacctccacaac 558 ||| ||||| || ||||| || |||||||||||||||||||| ||||||| ||| || || Sbjct: 9579718 gaacgccactgtagtgcacacagaagccagccacatcaacttattgataatctctactac 9579659 Query: 559 tcgcctctctgctttcgtctcgcccctaacaagtgttatctggaccaccactactgctaa 618 |||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| Sbjct: 9579658 ccgcctctctgctttagtctctcccctaacaagtgtaatctgaaccaccactactgctaa 9579599 Query: 619 tgatgtgaacaaggcgatggcattgaagatgaagaacaccttgaaggataacgcatgcac 678 ||||||||||||||| |||||||||||||||||||| | ||||||||||| |||||||| Sbjct: 9579598 tgatgtgaacaaggcaatggcattgaagatgaagaagatcttgaaggatacggcatgcac 9579539 Query: 679 aacgattgccacacctttctcatcgttaccacctgg 714 | | |||||||| || || | ||||||||||||||| Sbjct: 9579538 agctattgccacgccgttgttatcgttaccacctgg 9579503 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 acaccagcttattggaatgtatac 126 ||||||||||||||||| |||||| Sbjct: 9580098 acaccagcttattggaacgtatac 9580075
>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete sequence Length = 165113 Score = 432 bits (218), Expect = e-118 Identities = 397/456 (87%), Gaps = 3/456 (0%) Strand = Plus / Minus Query: 262 tcatatggcgtatatccggtctatctcggaatctga---ctccgagttgtggttccatga 318 |||||||||||||||||||||||||||||| ||||| ||| ||||| || | |||||| Sbjct: 857 tcatatggcgtatatccggtctatctcggagtctgaaaactctgagttttgctgccatga 798 Query: 319 gtttgagccgctccgccttgttgatttcaccttcttcctaattgaacgtgtgcgcttgga 378 ||||||||| |||| |||||| ||||||||||||||||| || ||||||||||||||||| Sbjct: 797 gtttgagccactcctccttgtagatttcaccttcttcctgatcgaacgtgtgcgcttgga 738 Query: 379 cttcaccacatagtatgtcatcgtaccgagcacgccagccatgatcaccccaccaatgag 438 ||||||||||||| ||||| ||||| ||||| |||||||||||||| || || || || Sbjct: 737 tctcaccacatagtaggtcattgtaccaagcacaccagccatgatcactccgccgattag 678 Query: 439 ggtcaccagaagcgccgcccacctgaagtgccgacccaccactatgtaagaggaggatat 498 |||||||||||||||||||||| ||||||| || || || || |||| ||| ||||| Sbjct: 677 ggtcaccagaagcgccgcccactggaagtgcttcccaactacaatataagcggatgatat 618 Query: 499 gaatgccaccgtggtgcataccgaagccagccacatcaacttgttgataacctccacaac 558 ||| ||||| || ||||| || |||||||||||||||||||| ||||||| ||| || || Sbjct: 617 gaacgccactgtagtgcacacagaagccagccacatcaacttattgataatctctactac 558 Query: 559 tcgcctctctgctttcgtctcgcccctaacaagtgttatctggaccaccactactgctaa 618 |||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| Sbjct: 557 ccgcctctctgctttagtctctcccctaacaagtgtaatctgaaccaccactactgctaa 498 Query: 619 tgatgtgaacaaggcgatggcattgaagatgaagaacaccttgaaggataacgcatgcac 678 ||||||||||||||| |||||||||||||||||||| | ||||||||||| |||||||| Sbjct: 497 tgatgtgaacaaggcaatggcattgaagatgaagaagatcttgaaggatacggcatgcac 438 Query: 679 aacgattgccacacctttctcatcgttaccacctgg 714 | | |||||||| || || | ||||||||||||||| Sbjct: 437 agctattgccacgccgttgttatcgttaccacctgg 402 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 acaccagcttattggaatgtatac 126 ||||||||||||||||| |||||| Sbjct: 997 acaccagcttattggaacgtatac 974
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 432 bits (218), Expect = e-118 Identities = 397/456 (87%), Gaps = 3/456 (0%) Strand = Plus / Minus Query: 262 tcatatggcgtatatccggtctatctcggaatctga---ctccgagttgtggttccatga 318 |||||||||||||||||||||||||||||| ||||| ||| ||||| || | |||||| Sbjct: 9578079 tcatatggcgtatatccggtctatctcggagtctgaaaactctgagttttgctgccatga 9578020 Query: 319 gtttgagccgctccgccttgttgatttcaccttcttcctaattgaacgtgtgcgcttgga 378 ||||||||| |||| |||||| ||||||||||||||||| || ||||||||||||||||| Sbjct: 9578019 gtttgagccactcctccttgtagatttcaccttcttcctgatcgaacgtgtgcgcttgga 9577960 Query: 379 cttcaccacatagtatgtcatcgtaccgagcacgccagccatgatcaccccaccaatgag 438 ||||||||||||| ||||| ||||| ||||| |||||||||||||| || || || || Sbjct: 9577959 tctcaccacatagtaggtcattgtaccaagcacaccagccatgatcactccgccgattag 9577900 Query: 439 ggtcaccagaagcgccgcccacctgaagtgccgacccaccactatgtaagaggaggatat 498 |||||||||||||||||||||| ||||||| || || || || |||| ||| ||||| Sbjct: 9577899 ggtcaccagaagcgccgcccactggaagtgcttcccaactacaatataagcggatgatat 9577840 Query: 499 gaatgccaccgtggtgcataccgaagccagccacatcaacttgttgataacctccacaac 558 ||| ||||| || ||||| || |||||||||||||||||||| ||||||| ||| || || Sbjct: 9577839 gaacgccactgtagtgcacacagaagccagccacatcaacttattgataatctctactac 9577780 Query: 559 tcgcctctctgctttcgtctcgcccctaacaagtgttatctggaccaccactactgctaa 618 |||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| Sbjct: 9577779 ccgcctctctgctttagtctctcccctaacaagtgtaatctgaaccaccactactgctaa 9577720 Query: 619 tgatgtgaacaaggcgatggcattgaagatgaagaacaccttgaaggataacgcatgcac 678 ||||||||||||||| |||||||||||||||||||| | ||||||||||| |||||||| Sbjct: 9577719 tgatgtgaacaaggcaatggcattgaagatgaagaagatcttgaaggatacggcatgcac 9577660 Query: 679 aacgattgccacacctttctcatcgttaccacctgg 714 | | |||||||| || || | ||||||||||||||| Sbjct: 9577659 agctattgccacgccgttgttatcgttaccacctgg 9577624 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 acaccagcttattggaatgtatac 126 ||||||||||||||||| |||||| Sbjct: 9578219 acaccagcttattggaacgtatac 9578196
>gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence Length = 131709 Score = 432 bits (218), Expect = e-118 Identities = 397/456 (87%), Gaps = 3/456 (0%) Strand = Plus / Plus Query: 262 tcatatggcgtatatccggtctatctcggaatctga---ctccgagttgtggttccatga 318 |||||||||||||||||||||||||||||| ||||| ||| ||||| || | |||||| Sbjct: 32728 tcatatggcgtatatccggtctatctcggagtctgaaaactctgagttttgctgccatga 32787 Query: 319 gtttgagccgctccgccttgttgatttcaccttcttcctaattgaacgtgtgcgcttgga 378 ||||||||| |||| |||||| ||||||||||||||||| || ||||||||||||||||| Sbjct: 32788 gtttgagccactcctccttgtagatttcaccttcttcctgatcgaacgtgtgcgcttgga 32847 Query: 379 cttcaccacatagtatgtcatcgtaccgagcacgccagccatgatcaccccaccaatgag 438 ||||||||||||| ||||| ||||| ||||| |||||||||||||| || || || || Sbjct: 32848 tctcaccacatagtaggtcattgtaccaagcacaccagccatgatcactccgccgattag 32907 Query: 439 ggtcaccagaagcgccgcccacctgaagtgccgacccaccactatgtaagaggaggatat 498 |||||||||||||||||||||| ||||||| || || || || |||| ||| ||||| Sbjct: 32908 ggtcaccagaagcgccgcccactggaagtgcttcccaactacaatataagcggatgatat 32967 Query: 499 gaatgccaccgtggtgcataccgaagccagccacatcaacttgttgataacctccacaac 558 ||| ||||| || ||||| || |||||||||||||||||||| ||||||| ||| || || Sbjct: 32968 gaacgccactgtagtgcacacagaagccagccacatcaacttattgataatctctactac 33027 Query: 559 tcgcctctctgctttcgtctcgcccctaacaagtgttatctggaccaccactactgctaa 618 |||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| Sbjct: 33028 ccgcctctctgctttagtctctcccctaacaagtgtaatctgaaccaccactactgctaa 33087 Query: 619 tgatgtgaacaaggcgatggcattgaagatgaagaacaccttgaaggataacgcatgcac 678 ||||||||||||||| |||||||||||||||||||| | ||||||||||| |||||||| Sbjct: 33088 tgatgtgaacaaggcaatggcattgaagatgaagaagatcttgaaggatacggcatgcac 33147 Query: 679 aacgattgccacacctttctcatcgttaccacctgg 714 | | |||||||| || || | ||||||||||||||| Sbjct: 33148 agctattgccacgccgttgttatcgttaccacctgg 33183 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 acaccagcttattggaatgtatac 126 ||||||||||||||||| |||||| Sbjct: 32588 acaccagcttattggaacgtatac 32611
>dbj|AK100495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099A04, full insert sequence Length = 2618 Score = 432 bits (218), Expect = e-118 Identities = 397/456 (87%), Gaps = 3/456 (0%) Strand = Plus / Minus Query: 262 tcatatggcgtatatccggtctatctcggaatctga---ctccgagttgtggttccatga 318 |||||||||||||||||||||||||||||| ||||| ||| ||||| || | |||||| Sbjct: 2256 tcatatggcgtatatccggtctatctcggagtctgaaaactctgagttttgctgccatga 2197 Query: 319 gtttgagccgctccgccttgttgatttcaccttcttcctaattgaacgtgtgcgcttgga 378 ||||||||| |||| |||||| ||||||||||||||||| || ||||||||||||||||| Sbjct: 2196 gtttgagccactcctccttgtagatttcaccttcttcctgatcgaacgtgtgcgcttgga 2137 Query: 379 cttcaccacatagtatgtcatcgtaccgagcacgccagccatgatcaccccaccaatgag 438 ||||||||||||| ||||| ||||| ||||| |||||||||||||| || || || || Sbjct: 2136 tctcaccacatagtaggtcattgtaccaagcacaccagccatgatcactccgccgattag 2077 Query: 439 ggtcaccagaagcgccgcccacctgaagtgccgacccaccactatgtaagaggaggatat 498 |||||||||||||||||||||| ||||||| || || || || |||| ||| ||||| Sbjct: 2076 ggtcaccagaagcgccgcccactggaagtgcttcccaactacaatataagcggatgatat 2017 Query: 499 gaatgccaccgtggtgcataccgaagccagccacatcaacttgttgataacctccacaac 558 ||| ||||| || ||||| || |||||||||||||||||||| ||||||| ||| || || Sbjct: 2016 gaacgccactgtagtgcacacagaagccagccacatcaacttattgataatctctactac 1957 Query: 559 tcgcctctctgctttcgtctcgcccctaacaagtgttatctggaccaccactactgctaa 618 |||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| Sbjct: 1956 ccgcctctctgctttagtctctcccctaacaagtgtaatctgaaccaccactactgctaa 1897 Query: 619 tgatgtgaacaaggcgatggcattgaagatgaagaacaccttgaaggataacgcatgcac 678 ||||||||||||||| |||||||||||||||||||| | ||||||||||| |||||||| Sbjct: 1896 tgatgtgaacaaggcaatggcattgaagatgaagaagatcttgaaggatacggcatgcac 1837 Query: 679 aacgattgccacacctttctcatcgttaccacctgg 714 | | |||||||| || || | ||||||||||||||| Sbjct: 1836 agctattgccacgccgttgttatcgttaccacctgg 1801 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 acaccagcttattggaatgtatac 126 ||||||||||||||||| |||||| Sbjct: 2396 acaccagcttattggaacgtatac 2373
>ref|NM_111789.2| Arabidopsis thaliana protein binding AT3G09550 mRNA, complete cds Length = 1730 Score = 61.9 bits (31), Expect = 3e-06 Identities = 127/159 (79%) Strand = Plus / Minus Query: 469 ccgacccaccactatgtaagaggaggatatgaatgccaccgtggtgcataccgaagccag 528 |||||| ||||| ||||| || ||||| ||||||||||| |||||||| || ||||| || Sbjct: 1359 ccgaccaaccacaatgtacgatgaggaaatgaatgccacggtggtgcagacagaagcgag 1300 Query: 529 ccacatcaacttgttgataacctccacaactcgcctctctgctttcgtctcgcccctaac 588 |||||| | ||| || || || ||||| || || ||||| | ||| ||||| || || || Sbjct: 1299 ccacatgagcttatttattacttccaccacacgtctctccgttttagtctctcctcttac 1240 Query: 589 aagtgttatctggaccaccactactgctaatgatgtgaa 627 ||| || || || || || ||||||||||| || ||||| Sbjct: 1239 aagcgtgatttgcacgacaactactgctaacgaagtgaa 1201
>gb|BT012564.1| Arabidopsis thaliana At3g09550 gene, complete cds Length = 1311 Score = 61.9 bits (31), Expect = 3e-06 Identities = 127/159 (79%) Strand = Plus / Minus Query: 469 ccgacccaccactatgtaagaggaggatatgaatgccaccgtggtgcataccgaagccag 528 |||||| ||||| ||||| || ||||| ||||||||||| |||||||| || ||||| || Sbjct: 1095 ccgaccaaccacaatgtacgatgaggaaatgaatgccacggtggtgcagacagaagcgag 1036 Query: 529 ccacatcaacttgttgataacctccacaactcgcctctctgctttcgtctcgcccctaac 588 |||||| | ||| || || || ||||| || || ||||| | ||| ||||| || || || Sbjct: 1035 ccacatgagcttatttattacttccaccacacgtctctccgttttagtctctcctcttac 976 Query: 589 aagtgttatctggaccaccactactgctaatgatgtgaa 627 ||| || || || || || ||||||||||| || ||||| Sbjct: 975 aagcgtgatttgcacgacaactactgctaacgaagtgaa 937
>gb|AC016661.7|AC016661 Arabidopsis thaliana chromosome 3 BAC F11F8 genomic sequence, complete sequence Length = 107603 Score = 61.9 bits (31), Expect = 3e-06 Identities = 127/159 (79%) Strand = Plus / Minus Query: 469 ccgacccaccactatgtaagaggaggatatgaatgccaccgtggtgcataccgaagccag 528 |||||| ||||| ||||| || ||||| ||||||||||| |||||||| || ||||| || Sbjct: 32356 ccgaccaaccacaatgtacgatgaggaaatgaatgccacggtggtgcagacagaagcgag 32297 Query: 529 ccacatcaacttgttgataacctccacaactcgcctctctgctttcgtctcgcccctaac 588 |||||| | ||| || || || ||||| || || ||||| | ||| ||||| || || || Sbjct: 32296 ccacatgagcttatttattacttccaccacacgtctctccgttttagtctctcctcttac 32237 Query: 589 aagtgttatctggaccaccactactgctaatgatgtgaa 627 ||| || || || || || ||||||||||| || ||||| Sbjct: 32236 aagcgtgatttgcacgacaactactgctaacgaagtgaa 32198
>ref|NM_190495.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1752 Score = 56.0 bits (28), Expect = 2e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 369 tgcgcttggacttcaccacatagtatgtcatcgtaccgagcacgccagccat 420 ||||||| || |||||||||||||||||||| ||||| || || |||||||| Sbjct: 1642 tgcgctttgatttcaccacatagtatgtcattgtacccagaacaccagccat 1591 Score = 46.1 bits (23), Expect = 0.16 Identities = 104/131 (79%) Strand = Plus / Minus Query: 524 gccagccacatcaacttgttgataacctccacaactcgcctctctgctttcgtctcgccc 583 ||||||||||| | ||||||||| ||||| ||||| |||||| | || || || ||| Sbjct: 1487 gccagccacataagcttgttgatcacctcaacaaccttcctctcagacttagtttctccc 1428 Query: 584 ctaacaagtgttatctggaccaccactactgctaatgatgtgaacaaggcgatggcattg 643 || |||| |||||||| || || || || || |||||||| |||| || || |||||| Sbjct: 1427 ctgacaaccgttatctgaactacgaccaccgccaatgatgtaaacagagctatagcattg 1368 Query: 644 aagatgaagaa 654 ||||||||||| Sbjct: 1367 aagatgaagaa 1357
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 56.0 bits (28), Expect = 2e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 369 tgcgcttggacttcaccacatagtatgtcatcgtaccgagcacgccagccat 420 ||||||| || |||||||||||||||||||| ||||| || || |||||||| Sbjct: 35878630 tgcgctttgatttcaccacatagtatgtcattgtacccagaacaccagccat 35878681 Score = 46.1 bits (23), Expect = 0.16 Identities = 104/131 (79%) Strand = Plus / Plus Query: 524 gccagccacatcaacttgttgataacctccacaactcgcctctctgctttcgtctcgccc 583 ||||||||||| | ||||||||| ||||| ||||| |||||| | || || || ||| Sbjct: 35878785 gccagccacataagcttgttgatcacctcaacaaccttcctctcagacttagtttctccc 35878844 Query: 584 ctaacaagtgttatctggaccaccactactgctaatgatgtgaacaaggcgatggcattg 643 || |||| |||||||| || || || || || |||||||| |||| || || |||||| Sbjct: 35878845 ctgacaaccgttatctgaactacgaccaccgccaatgatgtaaacagagctatagcattg 35878904 Query: 644 aagatgaagaa 654 ||||||||||| Sbjct: 35878905 aagatgaagaa 35878915
>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506B12 Length = 170759 Score = 56.0 bits (28), Expect = 2e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 369 tgcgcttggacttcaccacatagtatgtcatcgtaccgagcacgccagccat 420 ||||||| || |||||||||||||||||||| ||||| || || |||||||| Sbjct: 143088 tgcgctttgatttcaccacatagtatgtcattgtacccagaacaccagccat 143139 Score = 46.1 bits (23), Expect = 0.16 Identities = 104/131 (79%) Strand = Plus / Plus Query: 524 gccagccacatcaacttgttgataacctccacaactcgcctctctgctttcgtctcgccc 583 ||||||||||| | ||||||||| ||||| ||||| |||||| | || || || ||| Sbjct: 143243 gccagccacataagcttgttgatcacctcaacaaccttcctctcagacttagtttctccc 143302 Query: 584 ctaacaagtgttatctggaccaccactactgctaatgatgtgaacaaggcgatggcattg 643 || |||| |||||||| || || || || || |||||||| |||| || || |||||| Sbjct: 143303 ctgacaaccgttatctgaactacgaccaccgccaatgatgtaaacagagctatagcattg 143362 Query: 644 aagatgaagaa 654 ||||||||||| Sbjct: 143363 aagatgaagaa 143373
>gb|AC021483.11| Homo sapiens, clone RP11-38G5, complete sequence Length = 163065 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 aaagctgtttatactgagtgc 183 ||||||||||||||||||||| Sbjct: 9909 aaagctgtttatactgagtgc 9929
>gb|AC026826.7| Homo sapiens, clone RP11-591L14, complete sequence Length = 169462 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 aaagctgtttatactgagtgc 183 ||||||||||||||||||||| Sbjct: 92217 aaagctgtttatactgagtgc 92237
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 537 acttgttgataacctccacaa 557 ||||||||||||||||||||| Sbjct: 4473301 acttgttgataacctccacaa 4473321
>gb|AC119847.12| Mus musculus chromosome 3, clone RP23-46L5, complete sequence Length = 227081 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 ggaatctgactccgagttgt 308 |||||||||||||||||||| Sbjct: 175618 ggaatctgactccgagttgt 175637
>emb|AL163280.2|HS21C080 Homo sapiens chromosome 21 segment HS21C080 Length = 340000 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 tatacccacagcacctggag 158 |||||||||||||||||||| Sbjct: 76123 tatacccacagcacctggag 76142
>emb|AJ421825.1|SAU421825 Stigmatella aurantiaca ORF8, ORF7, ORF6, ORF5, ORF4, ORF3, ORF2, ORF1, stiA gene, stiB gene, stiC gene, stiD gene, stiE gene, stiF gene, stiG gene, stiH gene, stiJ gene, stiK gene, stiL gene and ORF9 Length = 66808 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tctgctcctggctcctgccc 94 |||||||||||||||||||| Sbjct: 55508 tctgctcctggctcctgccc 55489
>emb|AL669897.15| Mouse DNA sequence from clone RP23-78H4 on chromosome 11 Contains the Ywhae gene for tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon polypeptide, the Doc2b gene for double C2 beta, a novl gene, the 3' end of the gene for a novel protein similar to rat rabphilin-3a related protein and two CpG islands, complete sequence Length = 178980 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 634 gatggcattgaagatgaagaacac 657 ||||||| |||||||||||||||| Sbjct: 94606 gatggcaatgaagatgaagaacac 94629
>gb|AF064860.2| Homo sapiens chromosome 21 clone PAC 70I24 map 21q22.3, complete sequence Length = 170121 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 tatacccacagcacctggag 158 |||||||||||||||||||| Sbjct: 2714 tatacccacagcacctggag 2733
>gb|AC131971.9| Homo sapiens chromosome 11, clone CTC-343N3, complete sequence Length = 176226 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 accccatatacccacagcac 152 |||||||||||||||||||| Sbjct: 466 accccatatacccacagcac 485
>gb|AC108448.12| Homo sapiens chromosome 11, clone CTD-2544D21, complete sequence Length = 198599 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 accccatatacccacagcac 152 |||||||||||||||||||| Sbjct: 57855 accccatatacccacagcac 57836
>emb|AL954226.2|PTB126M21 Pan troglodytes chromosome 22 BAC PTB-126M21, complete sequence Length = 188320 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 tatacccacagcacctggag 158 |||||||||||||||||||| Sbjct: 121185 tatacccacagcacctggag 121204
>emb|AL162831.6|CNS01RI2 Human chromosome 14 DNA sequence BAC R-1077A2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 208102 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 ttctgatgatcacaatctat 39 |||||||||||||||||||| Sbjct: 190892 ttctgatgatcacaatctat 190873
>emb|AL161757.4|CNS01RHK Human chromosome 14 DNA sequence BAC R-1085N6 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 242832 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 ttctgatgatcacaatctat 39 |||||||||||||||||||| Sbjct: 93659 ttctgatgatcacaatctat 93640
>dbj|AK114784.1| Ciona intestinalis cDNA, clone:cieg017c10, full insert sequence Length = 1922 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 530 cacatcaacttgttgataac 549 |||||||||||||||||||| Sbjct: 1311 cacatcaacttgttgataac 1330
>gb|AF121897.4| Homo sapiens chromosome 21 clone RP1-160L9 map 21q22.2, complete sequence Length = 132088 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 tatacccacagcacctggag 158 |||||||||||||||||||| Sbjct: 80363 tatacccacagcacctggag 80382 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,137,497 Number of Sequences: 3902068 Number of extensions: 5137497 Number of successful extensions: 87629 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87476 Number of HSP's gapped (non-prelim): 140 length of query: 714 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 691 effective length of database: 17,143,297,704 effective search space: 11846018713464 effective search space used: 11846018713464 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)