Clone Information

BLAST Search Result

Clone Name	rbags29d09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_466633.1\| Oryza sativa (japonica cultivar-group), mRNA	184	3e-43
2	dbj\|AK063512.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	184	3e-43
3	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	111	3e-21
4	dbj\|AP006438.3\| Oryza sativa (japonica cultivar-group) genomic D...	111	3e-21
5	gb\|AY108135.1\| Zea mays PCO121188 mRNA sequence	50	0.010
6	emb\|AL445663.10\| Human DNA sequence from clone RP11-442A13 on ch...	48	0.039
7	emb\|AL161566.2\|ATCHRIV66 Arabidopsis thaliana DNA chromosome 4, ...	44	0.61
8	emb\|AL035440.2\|ATF10M23 Arabidopsis thaliana DNA chromosome 4, B...	44	0.61
9	gb\|AC009780.12\| Homo sapiens 12 BAC RP11-1C11 (Roswell Park Canc...	44	0.61
10	dbj\|AB016783.1\| Arabidopsis thaliana gene for glutamine amidotra...	44	0.61
11	gb\|AC130222.4\| Mus musculus BAC clone RP23-18K19 from chromosome...	42	2.4
12	gb\|AC164091.3\| Mus musculus BAC clone RP23-97M20 from chromosome...	42	2.4
13	gb\|AC131746.3\| Mus musculus BAC clone RP23-62F20 from 3, complet...	42	2.4
14	ref\|XM_648579.1\| Entamoeba histolytica HM-1:IMSS myotubularin (7...	42	2.4
15	emb\|AL731868.5\| Human DNA sequence from clone RP11-471L1 on chro...	42	2.4
16	emb\|AL136382.6\| Human DNA sequence from clone RP5-977L11 on chro...	42	2.4
17	gb\|DQ366599.2\| Camellia sinensis acetyl CoA carboxylase mRNA, co...	42	2.4
18	emb\|AL445066.1\|TACID4 Thermoplasma acidophilum complete genome; ...	42	2.4
19	gb\|AC108035.3\| Homo sapiens BAC clone RP11-140P5 from 4, complet...	42	2.4
20	dbj\|AB016897.1\| Homo sapiens genomic DNA, chromosome 6q27, compl...	42	2.4
21	dbj\|AB011399.1\| Homo sapiens gene for AF-6, complete cds	42	2.4
22	ref\|NM_101971.1\| Arabidopsis thaliana unknown protein AT1G21170 ...	40	9.5
23	ref\|NM_124017.2\| Arabidopsis thaliana ATP binding / nucleoside-t...	40	9.5
24	gb\|AC113050.9\| Mus musculus chromosome 1, clone RP23-250O14, com...	40	9.5
25	gb\|AC165170.2\| Mus musculus BAC clone CH25-458O4 from chromosome...	40	9.5
26	gb\|AF016671.3\| Caenorhabditis elegans cosmid W09G10, complete se...	40	9.5
27	ref\|XM_420276.1\| PREDICTED: Gallus gallus similar to hypothetica...	40	9.5
28	gb\|AE006219.1\| Pasteurella multocida subsp. multocida str. Pm70 ...	40	9.5
29	ref\|NM_015825.1\| Mus musculus SH3-binding domain glutamic acid-r...	40	9.5
30	emb\|CR456631.7\| Zebrafish DNA sequence from clone DKEY-101N15 in...	40	9.5
31	emb\|BX640478.14\| Zebrafish DNA sequence from clone CH211-42D10 i...	40	9.5
32	gb\|AC133889.9\| Mus musculus chromosome 16, clone RP23-380I13, co...	40	9.5
33	gb\|AC007033.3\| Homo sapiens BAC clone RP11-28D14 from 7, complet...	40	9.5
34	gb\|BC055870.1\| Mus musculus cDNA clone IMAGE:4486581, **** WARNI...	40	9.5
35	emb\|AL451140.15\| Human DNA sequence from clone RP11-540H22 on ch...	40	9.5
36	emb\|AL445664.14\| Human DNA sequence from clone RP11-343J18 on ch...	40	9.5
37	gb\|AC163388.5\| Mus musculus chromosome 1, clone RP24-74P5, compl...	40	9.5
38	emb\|AJ272170.1\|MMU272170 Mus musculus partial mRNA for putative ...	40	9.5
39	emb\|AJ239082.1\|MMU239082 Mus musculus mRNA for sh3bgr protein (s...	40	9.5
40	emb\|AL844182.10\| Mouse DNA sequence from clone RP23-399H17 on ch...	40	9.5
41	emb\|CR788247.9\| Zebrafish DNA sequence from clone DKEY-47M24 in ...	40	9.5
42	emb\|BX255917.3\| Zebrafish DNA sequence from clone DKEY-1H6 in li...	40	9.5
43	emb\|BX571760.8\| Zebrafish DNA sequence from clone DKEYP-78A1 in ...	40	9.5
44	emb\|BX927404.7\| Zebrafish DNA sequence from clone DKEY-18F7 in l...	40	9.5
45	gb\|AC099679.3\| Homo sapiens chromosome 1 clone RP4-683M8, comple...	40	9.5
46	emb\|BX927099.10\| Zebrafish DNA sequence from clone RP71-47P12 in...	40	9.5
47	emb\|BX004828.21\| Zebrafish DNA sequence from clone DKEY-185M8, c...	40	9.5
48	gb\|AC007497.6\| Homo sapiens chromosome 16 clone RP11-36I17, comp...	40	9.5
49	gb\|AC102621.12\| Mus musculus chromosome 1, clone RP23-429G8, com...	40	9.5
50	emb\|AL670860.6\| Mouse DNA sequence from clone RP23-50K11 on chro...	40	9.5
51	emb\|BX950786.1\| Gallus gallus finished cDNA, clone ChEST720g8	40	9.5
52	gb\|AC012190.3\|T22I11 Arabidopsis thaliana chromosome 1 BAC T22I1...	40	9.5
53	dbj\|BA000022.2\| Synechocystis sp. PCC 6803 DNA, complete genome	40	9.5
54	emb\|BX276128.8\| Zebrafish DNA sequence from clone CH211-215C18 i...	40	9.5
55	dbj\|AB019223.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	40	9.5
56	emb\|BX649261.3\| Zebrafish DNA sequence from clone DKEY-215A8 in ...	40	9.5
57	gb\|AY112647.1\| Zea mays CL30332_1 mRNA sequence	40	9.5
58	gb\|AC109499.21\| Mus musculus chromosome 18, clone RP23-349E12, c...	40	9.5
59	emb\|BX005399.30\| Zebrafish DNA sequence from clone DKEY-3D16 in ...	40	9.5
60	gb\|AE017226.1\| Treponema denticola ATCC 35405, complete genome	40	9.5
61	emb\|AL807796.16\| Mouse DNA sequence from clone RP23-167I12 on ch...	40	9.5

>ref|XM_466633.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1337

 Score =  184 bits (93), Expect = 3e-43
 Identities = 228/273 (83%)
 Strand = Plus / Minus

                                                                       
Query: 407 ttatcgcctgaaatcgagagacgcctactgatgtctggaagaatttcaggctccagttcc 466
           ||||| |||||| | ||| |||||||| || | ||||||||||| ||||| ||||| |||
Sbjct: 853 ttatcacctgaacttgagcgacgcctattgttctctggaagaatctcaggttccagctcc 794

                                                                       
Query: 467 agcacgttcacttcttcataaaatggtgcaactgccttagctggaaacagcagaggatca 526
           | | | || ||||||||| |||| | ||| ||  ||| || |||||| |||| | |||||
Sbjct: 793 atctcttttacttcttcaaaaaacgctgctaccacctcagatggaaaaagcacatgatca 734

                                                                       
Query: 527 aatatcacatttgaccagtcatgcaatgctgacgtcattttctccacttttttcttgaca 586
           |||| | | | || |||||| |||||||||||| | ||||||||||| || |||||||||
Sbjct: 733 aataccgcgtctggccagtcgtgcaatgctgacattattttctccaccttcttcttgaca 674

                                                                       
Query: 587 cgtttgtctatcttgtcattgtccaacttctgagcatcattcccagtgaagtgggtgcgt 646
           |||||||||    |||| || ||||||||||||| |||||||||||||||||||||||  
Sbjct: 673 cgtttgtcttgactgtccttttccaacttctgagaatcattcccagtgaagtgggtgccc 614

                                            
Query: 647 tccaccccacccttagcccattcatgacatttt 679
           ||||||||| |||||||||||||||||||||||
Sbjct: 613 tccaccccatccttagcccattcatgacatttt 581

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>dbj|AK063512.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-G03, full
           insert sequence
          Length = 1337

 Score =  184 bits (93), Expect = 3e-43
 Identities = 228/273 (83%)
 Strand = Plus / Minus

                                                                       
Query: 407 ttatcgcctgaaatcgagagacgcctactgatgtctggaagaatttcaggctccagttcc 466
           ||||| |||||| | ||| |||||||| || | ||||||||||| ||||| ||||| |||
Sbjct: 853 ttatcacctgaacttgagcgacgcctattgttctctggaagaatctcaggttccagctcc 794

                                                                       
Query: 467 agcacgttcacttcttcataaaatggtgcaactgccttagctggaaacagcagaggatca 526
           | | | || ||||||||| |||| | ||| ||  ||| || |||||| |||| | |||||
Sbjct: 793 atctcttttacttcttcaaaaaacgctgctaccacctcagatggaaaaagcacatgatca 734

                                                                       
Query: 527 aatatcacatttgaccagtcatgcaatgctgacgtcattttctccacttttttcttgaca 586
           |||| | | | || |||||| |||||||||||| | ||||||||||| || |||||||||
Sbjct: 733 aataccgcgtctggccagtcgtgcaatgctgacattattttctccaccttcttcttgaca 674

                                                                       
Query: 587 cgtttgtctatcttgtcattgtccaacttctgagcatcattcccagtgaagtgggtgcgt 646
           |||||||||    |||| || ||||||||||||| |||||||||||||||||||||||  
Sbjct: 673 cgtttgtcttgactgtccttttccaacttctgagaatcattcccagtgaagtgggtgccc 614

                                            
Query: 647 tccaccccacccttagcccattcatgacatttt 679
           ||||||||| |||||||||||||||||||||||
Sbjct: 613 tccaccccatccttagcccattcatgacatttt 581

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  111 bits (56), Expect = 3e-21
 Identities = 68/72 (94%)
 Strand = Plus / Minus

                                                                            
Query: 608      tccaacttctgagcatcattcccagtgaagtgggtgcgttccaccccacccttagcccat 667
                ||||||||||||| |||||||||||||||||||||||  ||||||||| |||||||||||
Sbjct: 23790286 tccaacttctgagaatcattcccagtgaagtgggtgccctccaccccatccttagcccat 23790227

                            
Query: 668      tcatgacatttt 679
                ||||||||||||
Sbjct: 23790226 tcatgacatttt 23790215



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                            
Query: 508      tggaaacagcagaggatcaaatatcacatttgaccagtcatgcaatgctgacgtcatttt 567
                |||||| |||| | ||||||||| | | | || |||||| |||||||||||| | |||||
Sbjct: 23790489 tggaaaaagcacatgatcaaataccgcgtctggccagtcgtgcaatgctgacattatttt 23790430

                                    
Query: 568      ctccacttttttcttgacac 587
                |||||| || ||||||||||
Sbjct: 23790429 ctccaccttcttcttgacac 23790410



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                            
Query: 413      cctgaaatcgagagacgcctactgatgtctggaagaatttcaggctccagttccagcacg 472
                |||||| | ||| |||||||| || | ||||||||||| ||||| ||||| |||| | | 
Sbjct: 23791575 cctgaacttgagcgacgcctattgttctctggaagaatctcaggttccagctccatctct 23791516

                                 
Query: 473      ttcacttcttcataaaa 489
                || ||||||||| ||||
Sbjct: 23791515 tttacttcttcaaaaaa 23791499



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 317      tctctcagctgaaactcaac 336
                ||||||||||||||||||||
Sbjct: 23791792 tctctcagctgaaactcaac 23791773

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>dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0030C08
          Length = 163423

 Score =  111 bits (56), Expect = 3e-21
 Identities = 68/72 (94%)
 Strand = Plus / Minus

                                                                         
Query: 608   tccaacttctgagcatcattcccagtgaagtgggtgcgttccaccccacccttagcccat 667
             ||||||||||||| |||||||||||||||||||||||  ||||||||| |||||||||||
Sbjct: 11952 tccaacttctgagaatcattcccagtgaagtgggtgccctccaccccatccttagcccat 11893

                         
Query: 668   tcatgacatttt 679
             ||||||||||||
Sbjct: 11892 tcatgacatttt 11881



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                         
Query: 508   tggaaacagcagaggatcaaatatcacatttgaccagtcatgcaatgctgacgtcatttt 567
             |||||| |||| | ||||||||| | | | || |||||| |||||||||||| | |||||
Sbjct: 12155 tggaaaaagcacatgatcaaataccgcgtctggccagtcgtgcaatgctgacattatttt 12096

                                 
Query: 568   ctccacttttttcttgacac 587
             |||||| || ||||||||||
Sbjct: 12095 ctccaccttcttcttgacac 12076



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                         
Query: 413   cctgaaatcgagagacgcctactgatgtctggaagaatttcaggctccagttccagcacg 472
             |||||| | ||| |||||||| || | ||||||||||| ||||| ||||| |||| | | 
Sbjct: 13241 cctgaacttgagcgacgcctattgttctctggaagaatctcaggttccagctccatctct 13182

                              
Query: 473   ttcacttcttcataaaa 489
             || ||||||||| ||||
Sbjct: 13181 tttacttcttcaaaaaa 13165



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   tctctcagctgaaactcaac 336
             ||||||||||||||||||||
Sbjct: 13458 tctctcagctgaaactcaac 13439

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>gb|AY108135.1| Zea mays PCO121188 mRNA sequence
          Length = 633

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 422 gagagacgcctactgatgtctggaagaatttcaggctccagttccagcacgtt 474
           |||||||||| ||||||||| || ||||| ||||| ||||  |||||||||||
Sbjct: 199 gagagacgccaactgatgtccgggagaatctcaggttccacctccagcacgtt 147



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 570 ccacttttttcttgacacgtttgtcta 596
           ||||||| |||||||||||||||||||
Sbjct: 51  ccactttcttcttgacacgtttgtcta 25

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>emb|AL445663.10| Human DNA sequence from clone RP11-442A13 on chromosome 9 Contains a
              tumor protein, translationally-controlled 1 (TPT1)
              pseudogene, complete sequence
          Length = 192226

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 483    cataaaatggtgcaactgccttag 506
              ||||||||||||||||||||||||
Sbjct: 110886 cataaaatggtgcaactgccttag 110863

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>emb|AL161566.2|ATCHRIV66 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 66
          Length = 198372

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 206   agcaatgttgcaaaggaggcag 227
             ||||||||||||||||||||||
Sbjct: 20952 agcaatgttgcaaaggaggcag 20931

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>emb|AL035440.2|ATF10M23 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M23 (ESSA project)
          Length = 128574

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 206   agcaatgttgcaaaggaggcag 227
             ||||||||||||||||||||||
Sbjct: 65109 agcaatgttgcaaaggaggcag 65088

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>gb|AC009780.12| Homo sapiens 12 BAC RP11-1C11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 144454

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 638   tgggtgcgttccaccccaccct 659
             ||||||||||||||||||||||
Sbjct: 98370 tgggtgcgttccaccccaccct 98349

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>dbj|AB016783.1| Arabidopsis thaliana gene for glutamine amidotransferase/cyclase,
            partial cds
          Length = 4581

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 206  agcaatgttgcaaaggaggcag 227
            ||||||||||||||||||||||
Sbjct: 3460 agcaatgttgcaaaggaggcag 3439

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>gb|AC130222.4| Mus musculus BAC clone RP23-18K19 from chromosome 12, complete sequence
          Length = 218608

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 154   aacagcagcatctaggattctaattctat 182
             ||||| ||||||||| |||||||||||||
Sbjct: 79683 aacagaagcatctagaattctaattctat 79655

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>gb|AC164091.3| Mus musculus BAC clone RP23-97M20 from chromosome 3, complete sequence
          Length = 218807

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 499    tgccttagctggaaacagcag 519
              |||||||||||||||||||||
Sbjct: 158095 tgccttagctggaaacagcag 158115

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>gb|AC131746.3| Mus musculus BAC clone RP23-62F20 from 3, complete sequence
          Length = 201620

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 499    tgccttagctggaaacagcag 519
              |||||||||||||||||||||
Sbjct: 150444 tgccttagctggaaacagcag 150424

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>ref|XM_648579.1| Entamoeba histolytica HM-1:IMSS myotubularin (75.t00006)  partial
           mRNA
          Length = 2871

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 434 ctgatgtctggaagaatttca 454
           |||||||||||||||||||||
Sbjct: 940 ctgatgtctggaagaatttca 960

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>emb|AL731868.5| Human DNA sequence from clone RP11-471L1 on chromosome 6 Contains
            part of the MLLT4 gene for myeloid/lymphoid or
            mixed-lineage leukemia (trithorax (Drosophila) homolog)
            translocated gene protein 4, complete sequence
          Length = 54929

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 244  taagctttttcaggtgggcag 264
            |||||||||||||||||||||
Sbjct: 6309 taagctttttcaggtgggcag 6329

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>emb|AL136382.6| Human DNA sequence from clone RP5-977L11 on chromosome 1p22.3-31.2
             Contains the 3' end of a novel gene (KIAA1229), complete
             sequence
          Length = 136387

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 49    tgaaaaagcatctcagccaaa 69
             |||||||||||||||||||||
Sbjct: 60600 tgaaaaagcatctcagccaaa 60580

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>gb|DQ366599.2| Camellia sinensis acetyl CoA carboxylase mRNA, complete cds
          Length = 1800

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 250 ttttcaggtgggcagagggac 270
           |||||||||||||||||||||
Sbjct: 913 ttttcaggtgggcagagggac 933

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>emb|AL445066.1|TACID4 Thermoplasma acidophilum complete genome; segment 4/5
          Length = 297750

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 579    tcttgacacgtttgtctatcttgtcattg 607
              ||||||||||||| |||||| ||||||||
Sbjct: 188308 tcttgacacgtttctctatcatgtcattg 188280

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>gb|AC108035.3| Homo sapiens BAC clone RP11-140P5 from 4, complete sequence
          Length = 137055

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 562   cattttctccacttttttcttgaca 586
             |||||| ||||||||||||||||||
Sbjct: 70633 cattttgtccacttttttcttgaca 70657

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>dbj|AB016897.1| Homo sapiens genomic DNA, chromosome 6q27, complete sequence
          Length = 331211

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 244    taagctttttcaggtgggcag 264
              |||||||||||||||||||||
Sbjct: 149318 taagctttttcaggtgggcag 149338

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>dbj|AB011399.1| Homo sapiens gene for AF-6, complete cds
          Length = 163974

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 244   taagctttttcaggtgggcag 264
             |||||||||||||||||||||
Sbjct: 18889 taagctttttcaggtgggcag 18909

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>ref|NM_101971.1| Arabidopsis thaliana unknown protein AT1G21170 mRNA, complete cds
          Length = 3273

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 451  ttcaggctccagttccagca 470
            ||||||||||||||||||||
Sbjct: 1293 ttcaggctccagttccagca 1274

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>ref|NM_124017.2| Arabidopsis thaliana ATP binding / nucleoside-triphosphatase/
            nucleotide binding / transmembrane receptor AT5G46470
            mRNA, complete cds
          Length = 4849

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 364  gtcaagctcaacttcatcaa 383
            ||||||||||||||||||||
Sbjct: 2755 gtcaagctcaacttcatcaa 2774

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>gb|AC113050.9| Mus musculus chromosome 1, clone RP23-250O14, complete sequence
          Length = 207359

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   cttcatcaaaagaaacttca 394
             ||||||||||||||||||||
Sbjct: 55471 cttcatcaaaagaaacttca 55452

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>gb|AC165170.2| Mus musculus BAC clone CH25-458O4 from chromosome 16, complete sequence
          Length = 105383

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 561   tcattttctccacttttttc 580
             ||||||||||||||||||||
Sbjct: 22964 tcattttctccacttttttc 22945

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>gb|AF016671.3| Caenorhabditis elegans cosmid W09G10, complete sequence
          Length = 35075

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 562   cattttctccacttttttct 581
             ||||||||||||||||||||
Sbjct: 26135 cattttctccacttttttct 26154

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>ref|XM_420276.1| PREDICTED: Gallus gallus similar to hypothetical protein FLJ30046
           (LOC422298), mRNA
          Length = 1959

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 457 ctccagttccagcacgttcacttc 480
           ||||||||||||||| ||||||||
Sbjct: 783 ctccagttccagcactttcacttc 760

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>gb|AE006219.1| Pasteurella multocida subsp. multocida str. Pm70 section 186 of 204
            of the complete genome
          Length = 9873

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 199  ttgagcaagcaatgttgcaa 218
            ||||||||||||||||||||
Sbjct: 1812 ttgagcaagcaatgttgcaa 1831

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>ref|NM_015825.1| Mus musculus SH3-binding domain glutamic acid-rich protein
           (Sh3bgr), mRNA
          Length = 645

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 561 tcattttctccacttttttc 580
           ||||||||||||||||||||
Sbjct: 419 tcattttctccacttttttc 400

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>emb|CR456631.7| Zebrafish DNA sequence from clone DKEY-101N15 in linkage group 12,
             complete sequence
          Length = 92620

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   gctcaacttcatcaaaagaa 388
             ||||||||||||||||||||
Sbjct: 59705 gctcaacttcatcaaaagaa 59724

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>emb|BX640478.14| Zebrafish DNA sequence from clone CH211-42D10 in linkage group 8,
              complete sequence
          Length = 191201

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 369    gctcaacttcatcaaaagaa 388
              ||||||||||||||||||||
Sbjct: 130439 gctcaacttcatcaaaagaa 130458

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>gb|AC133889.9| Mus musculus chromosome 16, clone RP23-380I13, complete sequence
          Length = 235574

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    caaacaggaagctaagctgc 90
             ||||||||||||||||||||
Sbjct: 93379 caaacaggaagctaagctgc 93398

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>gb|AC007033.3| Homo sapiens BAC clone RP11-28D14 from 7, complete sequence
          Length = 76385

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 550   caatgctgacgtcattttctccac 573
             ||||||||| ||||||||||||||
Sbjct: 43884 caatgctgatgtcattttctccac 43907

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>gb|BC055870.1| Mus musculus cDNA clone IMAGE:4486581, **** WARNING: chimeric clone
           ****
          Length = 1168

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 561 tcattttctccacttttttc 580
           ||||||||||||||||||||
Sbjct: 470 tcattttctccacttttttc 451

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>emb|AL451140.15| Human DNA sequence from clone RP11-540H22 on chromosome 9 Contains the
             5' end of a novel gene and the 3' end of a novel gene,
             complete sequence
          Length = 187738

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 606   tgtccaacttctgagcatca 625
             ||||||||||||||||||||
Sbjct: 13719 tgtccaacttctgagcatca 13700

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>emb|AL445664.14| Human DNA sequence from clone RP11-343J18 on chromosome 9 Contains part
              of a novel gene, the 3' end of a novel gene and a CpG
              island, complete sequence
          Length = 161002

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 561    tcattttctccacttttttc 580
              ||||||||||||||||||||
Sbjct: 130621 tcattttctccacttttttc 130640

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>gb|AC163388.5| Mus musculus chromosome 1, clone RP24-74P5, complete sequence
          Length = 208139

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    aaaacaaacaggaagctaag 86
             ||||||||||||||||||||
Sbjct: 95688 aaaacaaacaggaagctaag 95669

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>emb|AJ272170.1|MMU272170 Mus musculus partial mRNA for putative SH3BGR protein (SH3BGR gene)
          Length = 1163

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 561 tcattttctccacttttttc 580
           ||||||||||||||||||||
Sbjct: 481 tcattttctccacttttttc 462

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>emb|AJ239082.1|MMU239082 Mus musculus mRNA for sh3bgr protein (sh3bgr gene)
          Length = 645

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 561 tcattttctccacttttttc 580
           ||||||||||||||||||||
Sbjct: 419 tcattttctccacttttttc 400

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>emb|AL844182.10| Mouse DNA sequence from clone RP23-399H17 on chromosome 4, complete
              sequence
          Length = 201590

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     actgaaaaagcatctcagcc 66
              ||||||||||||||||||||
Sbjct: 186784 actgaaaaagcatctcagcc 186765

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>emb|CR788247.9| Zebrafish DNA sequence from clone DKEY-47M24 in linkage group 13,
             complete sequence
          Length = 151044

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   gctcaacttcatcaaaagaa 388
             ||||||||||||||||||||
Sbjct: 78512 gctcaacttcatcaaaagaa 78493

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>emb|BX255917.3| Zebrafish DNA sequence from clone DKEY-1H6 in linkage group 20 Contains
             a novel gene, two transposase genes, a gene for a novel
             zinc finger protein and a gene for a novel protein similar
             to vertebrate MTHFD1, complete sequence
          Length = 218068

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   gctcaacttcatcaaaagaa 388
             ||||||||||||||||||||
Sbjct: 91717 gctcaacttcatcaaaagaa 91736

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>emb|BX571760.8| Zebrafish DNA sequence from clone DKEYP-78A1 in linkage group 20 Contains
              a novel gene and a CpG island, complete sequence
          Length = 156509

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 369    gctcaacttcatcaaaagaa 388
              ||||||||||||||||||||
Sbjct: 122722 gctcaacttcatcaaaagaa 122741

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>emb|BX927404.7| Zebrafish DNA sequence from clone DKEY-18F7 in linkage group 19,
             complete sequence
          Length = 94279

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 663   cccattcatgacattttttg 682
             ||||||||||||||||||||
Sbjct: 27107 cccattcatgacattttttg 27088

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>gb|AC099679.3| Homo sapiens chromosome 1 clone RP4-683M8, complete sequence
          Length = 106610

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 210  atgttgcaaaggaggcagtg 229
            ||||||||||||||||||||
Sbjct: 5524 atgttgcaaaggaggcagtg 5543

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>emb|BX927099.10| Zebrafish DNA sequence from clone RP71-47P12 in linkage group 10,
            complete sequence
          Length = 14850

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 369  gctcaacttcatcaaaagaa 388
            ||||||||||||||||||||
Sbjct: 9989 gctcaacttcatcaaaagaa 9970

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>emb|BX004828.21| Zebrafish DNA sequence from clone DKEY-185M8, complete sequence
          Length = 161870

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   gctcaacttcatcaaaagaa 388
             ||||||||||||||||||||
Sbjct: 62382 gctcaacttcatcaaaagaa 62401

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>gb|AC007497.6| Homo sapiens chromosome 16 clone RP11-36I17, complete sequence
          Length = 164269

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 438    tgtctggaagaatttcaggc 457
              ||||||||||||||||||||
Sbjct: 130658 tgtctggaagaatttcaggc 130677

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>gb|AC102621.12| Mus musculus chromosome 1, clone RP23-429G8, complete sequence
          Length = 175286

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     aaaacaaacaggaagctaag 86
              ||||||||||||||||||||
Sbjct: 145977 aaaacaaacaggaagctaag 145958

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>emb|AL670860.6| Mouse DNA sequence from clone RP23-50K11 on chromosome 2, complete
             sequence
          Length = 83914

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    taagctgcttccactgcaac 102
             ||||||||||||||||||||
Sbjct: 46414 taagctgcttccactgcaac 46395

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>emb|BX950786.1| Gallus gallus finished cDNA, clone ChEST720g8
          Length = 1284

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 457 ctccagttccagcacgttcacttc 480
           ||||||||||||||| ||||||||
Sbjct: 511 ctccagttccagcactttcacttc 488

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>gb|AC012190.3|T22I11 Arabidopsis thaliana chromosome 1 BAC T22I11 sequence, complete
            sequence
          Length = 68986

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 451  ttcaggctccagttccagca 470
            ||||||||||||||||||||
Sbjct: 1198 ttcaggctccagttccagca 1217

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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 621     catcattcccagtgaagtgg 640
               ||||||||||||||||||||
Sbjct: 2419544 catcattcccagtgaagtgg 2419525

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>emb|BX276128.8| Zebrafish DNA sequence from clone CH211-215C18 in linkage group 5,
             complete sequence
          Length = 176461

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   gctcaacttcatcaaaagaa 388
             ||||||||||||||||||||
Sbjct: 14715 gctcaacttcatcaaaagaa 14696

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>dbj|AB019223.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K11I1
          Length = 51529

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 364   gtcaagctcaacttcatcaa 383
             ||||||||||||||||||||
Sbjct: 17663 gtcaagctcaacttcatcaa 17682

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>emb|BX649261.3| Zebrafish DNA sequence from clone DKEY-215A8 in linkage group 4,
             complete sequence
          Length = 147890

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 472   gttcacttcttcataaaatg 491
             ||||||||||||||||||||
Sbjct: 47455 gttcacttcttcataaaatg 47436

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>gb|AY112647.1| Zea mays CL30332_1 mRNA sequence
          Length = 734

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 606 tgtccaacttctgagcatcattcccagt 633
           |||||||||||||| |||| ||||||||
Sbjct: 701 tgtccaacttctgatcatctttcccagt 728

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>gb|AC109499.21| Mus musculus chromosome 18, clone RP23-349E12, complete sequence
          Length = 190594

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 531    tcacatttgaccagtcatgc 550
              ||||||||||||||||||||
Sbjct: 128272 tcacatttgaccagtcatgc 128291

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>emb|BX005399.30| Zebrafish DNA sequence from clone DKEY-3D16 in linkage group 8,
             complete sequence
          Length = 193926

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   gctcaacttcatcaaaagaa 388
             ||||||||||||||||||||
Sbjct: 53205 gctcaacttcatcaaaagaa 53186



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   gctcaacttcatcaaaagaa 388
             ||||||||||||||||||||
Sbjct: 47025 gctcaacttcatcaaaagaa 47006

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>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 373    aacttcatcaaaagaaactt 392
              ||||||||||||||||||||
Sbjct: 185726 aacttcatcaaaagaaactt 185707

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>emb|AL807796.16| Mouse DNA sequence from clone RP23-167I12 on chromosome 4, complete
             sequence
          Length = 168268

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   gctttttcaggtgggcagag 266
             ||||||||||||||||||||
Sbjct: 24746 gctttttcaggtgggcagag 24765


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,517,125
Number of Sequences: 3902068
Number of extensions: 7517125
Number of successful extensions: 145269
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 145044
Number of HSP's gapped (non-prelim): 223
length of query: 693
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 670
effective length of database: 17,143,297,704
effective search space: 11486009461680
effective search space used: 11486009461680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result