ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags29d06 |
|---|---|
| Clone Library Name | barley_pub |
>SRPRB_MOUSE (P47758) Signal recognition particle receptor beta subunit| (SR-beta) Length = 269 Score = 63.2 bits (152), Expect = 6e-10 Identities = 41/102 (40%), Positives = 56/102 (54%), Gaps = 8/102 (7%) Frame = -3 Query: 577 AEYLYDILAKATVVKKRVPVLIFCNKTDKVTAHSKEFIKKQLEKEVNKLRESRNAISS-- 404 AE+LY +L + +K +LI CNK D A S + I++QLEKE+N LR +R+A S Sbjct: 154 AEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL 213 Query: 403 -ADITDEIELGVPGEAFNFSQCQNKVTVAE-----GAGLTGN 296 + T +LG G+ F FSQ KV E G G TG+ Sbjct: 214 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGS 255
>SRPRB_HUMAN (Q9Y5M8) Signal recognition particle receptor beta subunit| (SR-beta) (Protein APMCF1) Length = 271 Score = 60.5 bits (145), Expect = 4e-09 Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 5/104 (4%) Frame = -3 Query: 577 AEYLYDILAKATVVKKRVPVLIFCNKTDKVTAHSKEFIKKQLEKEVNKLRESRNAISS-- 404 AE+LY +L + +K LI CNK D A S + I++QLEKE+N LR +R+A S Sbjct: 156 AEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL 215 Query: 403 -ADITDEIELGVPGEAFNFSQCQNKVTVAE--GAGLTGNVSAVE 281 + T +LG G+ F FSQ KV E G G+V + + Sbjct: 216 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDVGSAD 259
>ARL3_CAEEL (O45379) ADP-ribosylation factor-like protein 3| Length = 184 Score = 36.2 bits (82), Expect = 0.074 Identities = 24/67 (35%), Positives = 33/67 (49%) Frame = -3 Query: 532 KRVPVLIFCNKTDKVTAHSKEFIKKQLEKEVNKLRESRNAISSADITDEIELGVPGEAFN 353 ++VPVLIF NK D VTA S E I ++L ++ + R SA + I G+ A N Sbjct: 118 RKVPVLIFANKQDLVTAASSEEITRKLNLDLLRDRTWHIQACSALKNEGINDGITWVASN 177 Query: 352 FSQCQNK 332 K Sbjct: 178 LKPASKK 184
>ATM_ASPFU (Q4WVM7) Serine/threonine-protein kinase tel1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase tel1) (Telomere length regulation protein 1) (ATM homolog) Length = 2796 Score = 32.7 bits (73), Expect = 0.81 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 11/107 (10%) Frame = +2 Query: 296 IAGETSTFSNCHLVLALTEVKCLSRDTKLDFISDVGR*YRIPRFPKLVHFFFQLLLDELL 475 +A ++T V LT V+ T L + D + Y P H FFQ L++ Sbjct: 1354 LASTSATMQESESVAVLTIVQ-----TFLQWFEDYLKSYESPHLSPEAHAFFQRLMESSR 1408 Query: 476 RVSS-----------NFVCFIAEYKNRNPFLHHSSLCQNVIQVLCSS 583 R+S+ N + + + +N L S+ +++ +LC+S Sbjct: 1409 RISTPDKELDGTEECNLLLEVIQDRNSKTRLLSQSISDHILSLLCAS 1455
>U202_DROME (Q9W3C1) Polycomb protein l(1)G0020 (p110 protein)| Length = 1008 Score = 31.2 bits (69), Expect = 2.4 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Frame = -3 Query: 568 LYDILAKATVVKKRVPVLIFC--NKTDKVTAHSKEFIKKQLEKEVNKLRESRNAISSADI 395 LYDIL K+TV K P +++C NK + ++ H K K K+ + ++ AD+ Sbjct: 40 LYDILTKSTV--KARPTVLWCYKNKDEAISNHGK--------KRAKKIAVGKVDVNEADL 89 Query: 394 TDEIEL 377 D + Sbjct: 90 FDSFRV 95
>HXB5B_BRARE (P09013) Homeobox protein Hox-B5b (Hox-B5-like) (Zf-54)| Length = 276 Score = 30.8 bits (68), Expect = 3.1 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +2 Query: 38 VSSETCENIHVKTTNHVNQRQSGASSANRYTSTESAHPYPW 160 VSSET E TT+H +++S A+S ++ +PW Sbjct: 146 VSSETEEGAQTTTTSHTQKQESVATSTTTPNDGQTPQIFPW 186
>TETP_CLOPE (Q46306) Tetracycline resistance protein tetP (Tetb(P))| Length = 652 Score = 30.4 bits (67), Expect = 4.0 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Frame = -3 Query: 589 MQAAAEYLYDILAKATVVKKRVPVLIFCNKTDKVTAHSK---EFIKKQLEKEVNKLRESR 419 +Q+ L+D T+ + +P +IF NK D++ A+ E IKK + +V +L+E Sbjct: 106 IQSQTRILFD-----TLKELNIPTIIFVNKLDRIGANFNKVFEEIKKNMSNKVVRLQEVY 160 Query: 418 NAISSA 401 + S A Sbjct: 161 DVGSKA 166
>YHA5_YEAST (P38752) Hypothetical 15.4 kDa protein in STE20-MRP4 intergenic| region Length = 130 Score = 30.0 bits (66), Expect = 5.3 Identities = 19/58 (32%), Positives = 26/58 (44%) Frame = +2 Query: 389 ISDVGR*YRIPRFPKLVHFFFQLLLDELLRVSSNFVCFIAEYKNRNPFLHHSSLCQNV 562 IS +G YRI F L + L E+ R + C I E + + H SLC N+ Sbjct: 49 ISSLGFTYRIDFFLALFSDPARPFLTEINRKIGQYACVIREREQAGEYSFHYSLCINI 106
>SYI_SYNEL (Q8DGI7) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 953 Score = 29.6 bits (65), Expect = 6.9 Identities = 9/22 (40%), Positives = 14/22 (63%) Frame = -2 Query: 335 QGDSC*RCWSHRQCFSSRAIHP 270 QG+ C RCW++ + A+HP Sbjct: 918 QGEKCVRCWNYSESVGQSALHP 939
>RSMB_COXBU (P45679) Ribosomal RNA small subunit methyltransferase B (EC| 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) Length = 430 Score = 29.3 bits (64), Expect = 9.0 Identities = 16/39 (41%), Positives = 18/39 (46%) Frame = -2 Query: 131 RCNDLHC*LLTDVDSHDWWFSHEYFHKFQRKLPCSERGI 15 R L C LL DV D W S E F + PCS G+ Sbjct: 289 RQEHLQC-LLADVSQIDQWSSGELFDRILLDAPCSATGV 326
>AAT_STRVG (Q60013) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (ASPAT) Length = 397 Score = 29.3 bits (64), Expect = 9.0 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Frame = -3 Query: 514 IFCNKTDKVTAHSKEFIKKQLEKEVNKLRESRNAISSADITDEIELG-VPGEAF 356 +FC T + ++ +K+ L KE+ R + +A I DE+E+ VPGEAF Sbjct: 312 VFC-PTPEGAFYAYPSVKELLGKEIRGKRPQSSVELAALILDEVEVAVVPGEAF 364 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,630,307 Number of Sequences: 219361 Number of extensions: 1488466 Number of successful extensions: 4392 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4306 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4390 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
