>RPOC_VIBPA (Q87KQ5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1400

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 68  THHSCYKHQGIDPFLHSS*SDTKLAPKQLDLCRM 169
           T H C  H+G+D   H    D K+A  +L L R+
Sbjct: 810 TEHDCGTHEGVDMMPHIEGGDVKVALSELALGRV 843

>ICA69_HUMAN (Q05084) Islet cell autoantigen 1 (69 kDa islet cell autoantigen)|
           (ICA69) (p69) (Islet cell autoantigen p69) (ICAp69)
          Length = 483

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 80  CYKHQGIDPFLHSS*SDTKLAPKQLDLCR---MGGKLW 184
           C  HQ ++ F H + SDT L   +++ CR    G  LW
Sbjct: 135 CRFHQEVETFRHRAISDTWLTVNRMEQCRTEYRGALLW 172

>ICA69_RAT (Q63054) Islet cell autoantigen 1 (69 kDa islet cell autoantigen)|
           (ICA69) (p69) (Islet cell autoantigen p69) (ICAp69)
          Length = 480

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 80  CYKHQGIDPFLHSS*SDTKLAPKQLDLCR---MGGKLW 184
           C  HQ ++ F H + SDT L   +++ CR    G  LW
Sbjct: 134 CRFHQEVETFRHRAISDTWLTVNRMEQCRTEYRGALLW 171

>TAP1_GORGO (Q28433) Antigen peptide transporter 1 (APT1) (Peptide transporter|
           TAP1) (ATP-binding cassette sub-family B member 2)
          Length = 748

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 158 LCRMGGKLWSSISYTMVXLV 217
           LC +G  LW S+S TMV LV
Sbjct: 314 LCLLGIMLWGSVSLTMVTLV 333

>TAP1_HUMAN (Q03518) Antigen peptide transporter 1 (APT1) (Peptide transporter|
           TAP1) (ATP-binding cassette sub-family B member 2)
           (Peptide transporter PSF1) (Peptide supply factor 1)
           (PSF-1) (Peptide transporter involved in antigen
           processing 1)
          Length = 748

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 158 LCRMGGKLWSSISYTMVXLV 217
           LC +G  LW S+S TMV L+
Sbjct: 314 LCLLGIMLWGSVSLTMVTLI 333


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,406,404
Number of Sequences: 219361
Number of extensions: 481162
Number of successful extensions: 782
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 80,573,946
effective HSP length: 52
effective length of database: 69,167,174
effective search space used: 1660012176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)