ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28n21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470005.1| Oryza sativa (japonica cultivar-group), mRNA 117 3e-23
2dbj|AK100651.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 60 7e-06
4gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genom... 60 7e-06
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
6gb|AY109440.1| Zea mays CL8405_1 mRNA sequence 60 7e-06
7gb|AC133218.3| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
8dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
10gb|BC045040.1| Xenopus laevis chaperonin containing TCP1, subuni... 46 0.10
11emb|CR848261.2| Xenopus tropicalis finished cDNA, clone TNeu069e02 46 0.10
12gb|AY251815.1| Bigelowiella natans chaperonin-containing TCP-1 t... 42 1.6
13emb|BX569684.2|OSJN00290 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
14gb|AC009990.9| Homo sapiens chromosome 05 clone RP11-94N1, compl... 42 1.6
15gb|AC116339.2| Homo sapiens chromosome 5 clone RP11-1006G2, comp... 42 1.6
16gb|AC097510.3| Homo sapiens BAC clone RP11-390C19 from 4, comple... 42 1.6
17gb|AC092798.3| Homo sapiens chromosome 3 clone RP11-653E17, comp... 42 1.6
18gb|AC010259.7| Homo sapiens chromosome 5 clone CTC-454M9, comple... 42 1.6
19dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
20emb|AL662972.3|OSJN00173 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
21emb|AL731631.2|OSJN00279 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
22gb|AC146033.2| Pan troglodytes BAC clone RP43-14B18 from 7, comp... 40 6.3
23emb|Z93382.1|CEF45G2 Caenorhabditis elegans Cosmid F45G2, comple... 40 6.3
24gb|AC006463.4| Homo sapiens BAC clone RP11-395G17 from 7, comple... 40 6.3
25gb|AC102663.6| Mus musculus chromosome 6, clone RP23-244M15, com... 40 6.3
26ref|NM_001007874.1| Xenopus tropicalis cct8 protein (cct8), mRNA 40 6.3
27gb|BC080140.1| Xenopus tropicalis cct8 protein, mRNA (cDNA clone... 40 6.3
28emb|AL590031.6| Human DNA sequence from clone RP11-285F11 on chr... 40 6.3
29emb|AL449104.5| Human DNA sequence from clone RP1-173P22 on chro... 40 6.3
30emb|Y15898.1|CBQPRS Coxiella burnetii plasmid QpRS DNA 40 6.3
31emb|X75356.1|CBQPH1 C.burnetii QpH1 plasmid, complete genomic se... 40 6.3
32dbj|AK139153.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 40 6.3
33gb|AY062031.1| Homo sapiens hypocretin receptor 2 (HCRTR2) gene,... 40 6.3
34gb|AE016829.1| Coxiella burnetii strain RSA 493 plasmid pQpH1, c... 40 6.3
35gb|AC158624.4| Mus musculus BAC RP23-299I16 (Roswell Park Cance... 40 6.3
36gb|AC135977.5| Homo sapiens chromosome 11, clone RP11-61N20, com... 40 6.3
37gb|AC118942.4| Homo sapiens chromosome 11, clone RP11-15P23, com... 40 6.3
38emb|BX004813.5| Zebrafish DNA sequence from clone CH211-55K22 in... 40 6.3
39emb|X85964.1|CBDNA9ORF C.burnetii ORF 611, ORF 206 & unknown ORF 40 6.3
40gb|AF162715.2|AF162715 Homo sapiens Skn-1a/i-like mRNA 40 6.3
41gb|AF131076.1|AF131076 Coxiella burnetii strain R1140 plasmid Qp... 40 6.3
42dbj|AP001150.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.3
43gb|AC153968.3| Mus musculus 10 BAC RP24-343C11 (Roswell Park Can... 40 6.3
44gb|L34077.1|COXROA307X Coxiella burnetii plasmid replication-par... 40 6.3 
>ref|XM_470005.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2070

 Score =  117 bits (59), Expect = 3e-23
 Identities = 104/119 (87%)
 Strand = Plus / Minus

                                                                        
Query: 338  ggctttgccatgataatctggtcaactcgtaaaacagtacatacagcatctgctgagtat 397
            |||||||||||||| ||||||||||| || |  ||||||||| ||||||| || ||||||
Sbjct: 1694 ggctttgccatgatgatctggtcaacccgcagtacagtacatgcagcatccgcagagtat 1635

                                                                       
Query: 398  tttagagcaaaggactttgtaacatagagatcccatattttcatgattgaagcatcctt 456
            |||||||| ||  ||||||||||||| || ||||||||||||||||||||  |||||||
Sbjct: 1634 tttagagcgaataactttgtaacataaaggtcccatattttcatgattgagacatcctt 1576
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>dbj|AK100651.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111D11, full
            insert sequence
          Length = 2070

 Score =  117 bits (59), Expect = 3e-23
 Identities = 104/119 (87%)
 Strand = Plus / Minus

                                                                        
Query: 338  ggctttgccatgataatctggtcaactcgtaaaacagtacatacagcatctgctgagtat 397
            |||||||||||||| ||||||||||| || |  ||||||||| ||||||| || ||||||
Sbjct: 1694 ggctttgccatgatgatctggtcaacccgcagtacagtacatgcagcatccgcagagtat 1635

                                                                       
Query: 398  tttagagcaaaggactttgtaacatagagatcccatattttcatgattgaagcatcctt 456
            |||||||| ||  ||||||||||||| || ||||||||||||||||||||  |||||||
Sbjct: 1634 tttagagcgaataactttgtaacataaaggtcccatattttcatgattgagacatcctt 1576
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                              
Query: 411      actttgtaacatagagatcccatattttcatgattgaagcatcctt 456
                ||||||||||||| || ||||||||||||||||||||  |||||||
Sbjct: 33293424 actttgtaacataaaggtcccatattttcatgattgagacatcctt 33293379



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 371      acagtacatacagcatctgctgagtattttagagc 405
                ||||||||| ||||||| || ||||||||||||||
Sbjct: 33293646 acagtacatgcagcatccgcagagtattttagagc 33293612
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>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete
             sequence
          Length = 122815

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                           
Query: 411   actttgtaacatagagatcccatattttcatgattgaagcatcctt 456
             ||||||||||||| || ||||||||||||||||||||  |||||||
Sbjct: 49940 actttgtaacataaaggtcccatattttcatgattgagacatcctt 49895



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 371   acagtacatacagcatctgctgagtattttagagc 405
             ||||||||| ||||||| || ||||||||||||||
Sbjct: 50162 acagtacatgcagcatccgcagagtattttagagc 50128
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                              
Query: 411      actttgtaacatagagatcccatattttcatgattgaagcatcctt 456
                ||||||||||||| || ||||||||||||||||||||  |||||||
Sbjct: 33383934 actttgtaacataaaggtcccatattttcatgattgagacatcctt 33383889



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 371      acagtacatacagcatctgctgagtattttagagc 405
                ||||||||| ||||||| || ||||||||||||||
Sbjct: 33384156 acagtacatgcagcatccgcagagtattttagagc 33384122
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>gb|AY109440.1| Zea mays CL8405_1 mRNA sequence
          Length = 1151

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 87/106 (82%)
 Strand = Plus / Plus

                                                                       
Query: 335 gccggctttgccatgataatctggtcaactcgtaaaacagtacatacagcatctgctgag 394
           |||||||| ||||| || ||||||||||| || |  || || ||| | ||||| || || 
Sbjct: 423 gccggcttcgccataatgatctggtcaacccgcagcacggtgcatgcggcatcggcagaa 482

                                                         
Query: 395 tattttagagcaaaggactttgtaacatagagatcccatattttca 440
           |||||||| |||||| ||||||| ||||| || |||||||||||||
Sbjct: 483 tattttagggcaaagaactttgtgacataaaggtcccatattttca 528
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>gb|AC133218.3| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0549G05, complete sequence
          Length = 147182

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                            
Query: 414   ttgtaacatagagatcccatattttcatgat 444
             ||||||||||||| |||||||||||||||||
Sbjct: 66814 ttgtaacatagaggtcccatattttcatgat 66784



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 374   gtacatacagcatctgctgagtattttagag 404
             |||||| |||||||||| |||||||||||||
Sbjct: 67060 gtacatgcagcatctgcagagtattttagag 67030
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                               
Query: 414      ttgtaacatagagatcccatattttcatgat 444
                ||||||||||||| |||||||||||||||||
Sbjct: 20945202 ttgtaacatagaggtcccatattttcatgat 20945172



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 374      gtacatacagcatctgctgagtattttagag 404
                |||||| |||||||||| |||||||||||||
Sbjct: 20945448 gtacatgcagcatctgcagagtattttagag 20945418
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                               
Query: 414      ttgtaacatagagatcccatattttcatgat 444
                ||||||||||||| |||||||||||||||||
Sbjct: 21255437 ttgtaacatagaggtcccatattttcatgat 21255407



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 374      gtacatacagcatctgctgagtattttagag 404
                |||||| |||||||||| |||||||||||||
Sbjct: 21255683 gtacatgcagcatctgcagagtattttagag 21255653
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>gb|BC045040.1| Xenopus laevis chaperonin containing TCP1, subunit 8 (theta), mRNA
            (cDNA clone MGC:53230 IMAGE:5543459), complete cds
          Length = 1876

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 329  ccgcccgccggctttgccatgataatctggtcaac 363
            |||||||| || ||||||||||| |||||||||||
Sbjct: 1654 ccgcccgctggttttgccatgatgatctggtcaac 1620
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>emb|CR848261.2| Xenopus tropicalis finished cDNA, clone TNeu069e02
          Length = 1870

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 341  tttgccatgataatctggtcaac 363
            |||||||||||||||||||||||
Sbjct: 1651 tttgccatgataatctggtcaac 1629
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>gb|AY251815.1| Bigelowiella natans chaperonin-containing TCP-1 theta mRNA, complete
            cds
          Length = 1977

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 325  cggcccgcccgccggctttgccatgataatctg 357
            |||||| || ||||||||||||||||| |||||
Sbjct: 1667 cggcccaccagccggctttgccatgatgatctg 1635
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>emb|BX569684.2|OSJN00290 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0046K02,
            complete sequence
          Length = 109366

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 32   aattttacaaaaccaatctttgaag 56
            ||||||| |||||||||||||||||
Sbjct: 4031 aattttaaaaaaccaatctttgaag 4007
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>gb|AC009990.9| Homo sapiens chromosome 05 clone RP11-94N1, complete sequence
          Length = 159772

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 403    agcaaaggactttgtaacata 423
              |||||||||||||||||||||
Sbjct: 146037 agcaaaggactttgtaacata 146017
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>gb|AC116339.2| Homo sapiens chromosome 5 clone RP11-1006G2, complete sequence
          Length = 74705

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 403   agcaaaggactttgtaacata 423
             |||||||||||||||||||||
Sbjct: 73725 agcaaaggactttgtaacata 73745
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>gb|AC097510.3| Homo sapiens BAC clone RP11-390C19 from 4, complete sequence
          Length = 177467

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 290   taatcttcatccattgcacct 310
             |||||||||||||||||||||
Sbjct: 82368 taatcttcatccattgcacct 82388
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>gb|AC092798.3| Homo sapiens chromosome 3 clone RP11-653E17, complete sequence
          Length = 156180

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 218   ataggatgaaacagtcttctgcatg 242
             |||| ||||||||||||||||||||
Sbjct: 90272 atagcatgaaacagtcttctgcatg 90248
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>gb|AC010259.7| Homo sapiens chromosome 5 clone CTC-454M9, complete sequence
          Length = 195476

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 403    agcaaaggactttgtaacata 423
              |||||||||||||||||||||
Sbjct: 154657 agcaaaggactttgtaacata 154637
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 32       aattttacaaaaccaatctttgaag 56
                ||||||| |||||||||||||||||
Sbjct: 15462478 aattttaaaaaaccaatctttgaag 15462454
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>emb|AL662972.3|OSJN00173 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063G07,
              complete sequence
          Length = 157622

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 32     aattttacaaaaccaatctttgaag 56
              ||||||| |||||||||||||||||
Sbjct: 151330 aattttaaaaaaccaatctttgaag 151306
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>emb|AL731631.2|OSJN00279 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0112E13,
             complete sequence
          Length = 133197

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 32    aattttacaaaaccaatctttgaag 56
             ||||||| |||||||||||||||||
Sbjct: 86545 aattttaaaaaaccaatctttgaag 86521
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>gb|AC146033.2| Pan troglodytes BAC clone RP43-14B18 from 7, complete sequence
          Length = 170094

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 367   taaaacagtacatacagcat 386
             ||||||||||||||||||||
Sbjct: 75825 taaaacagtacatacagcat 75806
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>emb|Z93382.1|CEF45G2 Caenorhabditis elegans Cosmid F45G2, complete sequence
          Length = 36309

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 422  tagagatcccatattttcatgatt 445
            ||||||||||||||||| ||||||
Sbjct: 1902 tagagatcccatattttgatgatt 1925
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>gb|AC006463.4| Homo sapiens BAC clone RP11-395G17 from 7, complete sequence
          Length = 120984

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   taaaacagtacatacagcat 386
             ||||||||||||||||||||
Sbjct: 94253 taaaacagtacatacagcat 94272
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>gb|AC102663.6| Mus musculus chromosome 6, clone RP23-244M15, complete sequence
          Length = 223742

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    tttggttcatataacaataa 82
             ||||||||||||||||||||
Sbjct: 97283 tttggttcatataacaataa 97302
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>ref|NM_001007874.1| Xenopus tropicalis cct8 protein (cct8), mRNA
          Length = 1967

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 340  ctttgccatgataatctggtcaac 363
            ||||||||| ||||||||||||||
Sbjct: 1650 ctttgccattataatctggtcaac 1627
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>gb|BC080140.1| Xenopus tropicalis cct8 protein, mRNA (cDNA clone MGC:89698
            IMAGE:7026586), complete cds
          Length = 1967

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 340  ctttgccatgataatctggtcaac 363
            ||||||||| ||||||||||||||
Sbjct: 1650 ctttgccattataatctggtcaac 1627
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>emb|AL590031.6| Human DNA sequence from clone RP11-285F11 on chromosome X Contains the
             5' end of the gene for a novel WD repeat domain protein,
             complete sequence
          Length = 145153

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 396   attttagagcaaaggacttt 415
             ||||||||||||||||||||
Sbjct: 49303 attttagagcaaaggacttt 49284
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>emb|AL449104.5| Human DNA sequence from clone RP1-173P22 on chromosome 6 Contains the
             3' end of the HCRTR2 gene for hypocretin (orexin) receptor
             2, complete sequence
          Length = 120466

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    attttacaaaaccaatcttt 52
             ||||||||||||||||||||
Sbjct: 46350 attttacaaaaccaatcttt 46331
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>emb|Y15898.1|CBQPRS Coxiella burnetii plasmid QpRS DNA
          Length = 39280

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 45   caatctttgaagacaagctt 64
            ||||||||||||||||||||
Sbjct: 4644 caatctttgaagacaagctt 4625
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>emb|X75356.1|CBQPH1 C.burnetii QpH1 plasmid, complete genomic sequence
          Length = 37329

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 45   caatctttgaagacaagctt 64
            ||||||||||||||||||||
Sbjct: 4646 caatctttgaagacaagctt 4627
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>dbj|AK139153.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:A730051F21
            product:unclassifiable, full insert sequence
          Length = 3347

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 63   tttggttcatataacaataa 82
            ||||||||||||||||||||
Sbjct: 2897 tttggttcatataacaataa 2916
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>gb|AY062031.1| Homo sapiens hypocretin receptor 2 (HCRTR2) gene, complete cds
          Length = 168575

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    attttacaaaaccaatcttt 52
             ||||||||||||||||||||
Sbjct: 80946 attttacaaaaccaatcttt 80927
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>gb|AE016829.1| Coxiella burnetii strain RSA 493 plasmid pQpH1, complete sequence
          Length = 37393

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    caatctttgaagacaagctt 64
             ||||||||||||||||||||
Sbjct: 31656 caatctttgaagacaagctt 31675
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>gb|AC158624.4| Mus musculus  BAC RP23-299I16 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 174188

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     gcagaacagaattttacaaa 42
              ||||||||||||||||||||
Sbjct: 149801 gcagaacagaattttacaaa 149782
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>gb|AC135977.5| Homo sapiens chromosome 11, clone RP11-61N20, complete sequence
          Length = 152868

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 278    gcacagaaaaactaatcttc 297
              ||||||||||||||||||||
Sbjct: 117998 gcacagaaaaactaatcttc 118017
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>gb|AC118942.4| Homo sapiens chromosome 11, clone RP11-15P23, complete sequence
          Length = 161527

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   gcacagaaaaactaatcttc 297
             ||||||||||||||||||||
Sbjct: 29590 gcacagaaaaactaatcttc 29609
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>emb|BX004813.5| Zebrafish DNA sequence from clone CH211-55K22 in linkage group 8,
             complete sequence
          Length = 148955

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   ctttgccatgataatctggt 359
             ||||||||||||||||||||
Sbjct: 92866 ctttgccatgataatctggt 92847
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>emb|X85964.1|CBDNA9ORF C.burnetii ORF 611, ORF 206 & unknown ORF
          Length = 7465

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 45  caatctttgaagacaagctt 64
           ||||||||||||||||||||
Sbjct: 337 caatctttgaagacaagctt 318
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>gb|AF162715.2|AF162715 Homo sapiens Skn-1a/i-like mRNA
          Length = 3450

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 374 gtacatacagcatctgctga 393
           ||||||||||||||||||||
Sbjct: 595 gtacatacagcatctgctga 576
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>gb|AF131076.1|AF131076 Coxiella burnetii strain R1140 plasmid QpDV, complete sequence
          Length = 32601

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 45   caatctttgaagacaagctt 64
            ||||||||||||||||||||
Sbjct: 4646 caatctttgaagacaagctt 4627
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>dbj|AP001150.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-778O17, complete
             sequence
          Length = 157282

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 374   gtacatacagcatctgctga 393
             ||||||||||||||||||||
Sbjct: 71130 gtacatacagcatctgctga 71111
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>gb|AC153968.3| Mus musculus 10 BAC RP24-343C11 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 151710

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    gcagaacagaattttacaaa 42
             ||||||||||||||||||||
Sbjct: 85501 gcagaacagaattttacaaa 85482
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>gb|L34077.1|COXROA307X Coxiella burnetii plasmid replication-partition related protein
            (roa307) gene, complete cds and qsopA gene, partial cds
          Length = 1320

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 45   caatctttgaagacaagctt 64
            ||||||||||||||||||||
Sbjct: 1177 caatctttgaagacaagctt 1158


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,309,997
Number of Sequences: 3902068
Number of extensions: 4309997
Number of successful extensions: 79823
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79593
Number of HSP's gapped (non-prelim): 229
length of query: 468
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 446
effective length of database: 17,147,199,772
effective search space: 7647651098312
effective search space used: 7647651098312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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