ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28n12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC158684.7| Mus musculus 6 BAC RP23-332N21 (Roswell Park Canc... 50 0.004
2gb|AC161888.5| Mus musculus 6 BAC RP23-448G18 (Roswell Park Canc... 50 0.004
3gb|AC158679.8| Mus musculus 6 BAC RP23-345O17 (Roswell Park Canc... 50 0.004
4gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, comple... 46 0.064
5gb|AC159418.1| Trypanosoma brucei chromosome 5 clone RPCI93-25N2... 44 0.25
6gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence 44 0.25
7gb|AC102136.6| Mus musculus chromosome 3, clone RP23-269G19, com... 42 0.99
8gb|AC158583.3| Mus musculus chromosome 3, clone RP24-318B11, com... 42 0.99
9emb|AL590386.5| Human DNA sequence from clone RP11-721G21 on chr... 42 0.99
10emb|AL672297.7| Mouse DNA sequence from clone RP23-137E3 on chro... 42 0.99
11emb|AL807400.9| Mouse DNA sequence from clone RP23-196A4 on chro... 42 0.99
12gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.9
13gb|AC140985.3| Mus musculus BAC clone RP23-60H23 from chromosome... 40 3.9
14gb|AC130726.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.9
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 3.9
16gb|AC122244.5| Mus musculus BAC clone RP23-149I9 from chromosome... 40 3.9
17emb|CT025604.10| Mouse DNA sequence from clone RP23-332P8 on chr... 40 3.9
18emb|CR407551.12| Zebrafish DNA sequence from clone DKEYP-44H3 in... 40 3.9
19emb|CT010162.2| Pan troglodytes chromosome X BAC RP43-009H04, co... 40 3.9
20gb|AC122456.4| Mus musculus BAC clone RP24-265M23 from chromosom... 40 3.9
21gb|AC117237.2| Mus musculus BAC clone RP23-431G18 from 13, compl... 40 3.9
22gb|AC124120.5| Mus musculus chromosome 1, clone RP24-64M13, comp... 40 3.9
23emb|AL139278.12| Human DNA sequence from clone RP4-639D23 on chr... 40 3.9
24gb|AC131154.2| Homo sapiens 3 BAC RP13-489G4 (Roswell Park Cance... 40 3.9
25emb|AL078597.11|HSDJ442I1 Human DNA sequence from clone RP3-442I... 40 3.9
26gb|AC161432.5| Mus musculus chromosome 1, clone RP23-453N14, com... 40 3.9
27gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genom... 40 3.9
28gb|AC100862.2| Homo sapiens chromosome 8, clone RP11-1137L4, com... 40 3.9
29gb|AC096506.5| Homo sapiens Xp BAC RP11-64I1 (Roswell Park Cance... 40 3.9
30gb|AC012413.10| Homo sapiens chromosome 8, clone RP11-401H2, com... 40 3.9
31gb|AC080093.6| Homo sapiens BAC clone RP11-957J11 from 7, comple... 40 3.9
32emb|BX255959.11| Zebrafish DNA sequence from clone CH211-236E24 ... 40 3.9
33tpg|BK000023.1| TPA: TPA_exp: Mus musculus nuclear pore complex-... 40 3.9
34gb|AC020732.4|AC020732 Homo sapiens BAC clone RP11-556H16 from X... 40 3.9
35dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
36dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
37gb|AC055764.23| Homo sapiens 3 BAC RP11-803P9 (Roswell Park Canc... 40 3.9
38gb|AC068196.4| Homo sapiens BAC clone RP11-685J19 from 2, comple... 40 3.9
39gb|AC154615.2| Mus musculus BAC clone RP23-257K8 from chromosome... 40 3.9
40gb|AC154323.3| Mus musculus BAC clone RP23-307K19 from chromosom... 40 3.9
41gb|AC104076.5| Homo sapiens BAC clone RP11-397C2 from 2, complet... 40 3.9
42gb|AC154407.2| Mus musculus BAC clone RP24-257B4 from 14, comple... 40 3.9
43emb|CR753890.27| Zebrafish DNA sequence from clone CH211-207D8 i... 40 3.9
44emb|BX950865.11| Zebrafish DNA sequence from clone DKEYP-100E12 ... 40 3.9
45gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 3.9 
>gb|AC158684.7| Mus musculus 6 BAC RP23-332N21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 210307

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 145    tgtcctgatgcttgtgaagaaacat 169
              |||||||||||||||||||||||||
Sbjct: 200389 tgtcctgatgcttgtgaagaaacat 200413
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>gb|AC161888.5| Mus musculus 6 BAC RP23-448G18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 189867

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 145    tgtcctgatgcttgtgaagaaacat 169
              |||||||||||||||||||||||||
Sbjct: 139593 tgtcctgatgcttgtgaagaaacat 139617
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>gb|AC158679.8| Mus musculus 6 BAC RP23-345O17 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 192748

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 145    tgtcctgatgcttgtgaagaaacat 169
              |||||||||||||||||||||||||
Sbjct: 176882 tgtcctgatgcttgtgaagaaacat 176858
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>gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, complete sequence
          Length = 203739

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 211    aacaaaataaaaataatctaaca 233
              |||||||||||||||||||||||
Sbjct: 155819 aacaaaataaaaataatctaaca 155797
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>gb|AC159418.1| Trypanosoma brucei chromosome 5 clone RPCI93-25N21, complete sequence
          Length = 80752

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 241   taacagtaaataacaaataatg 262
             ||||||||||||||||||||||
Sbjct: 10674 taacagtaaataacaaataatg 10695
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>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence
          Length = 1608198

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 241   taacagtaaataacaaataatg 262
             ||||||||||||||||||||||
Sbjct: 70079 taacagtaaataacaaataatg 70058
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>gb|AC102136.6| Mus musculus chromosome 3, clone RP23-269G19, complete sequence
          Length = 186659

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 241    taacagtaaataacaaataat 261
              |||||||||||||||||||||
Sbjct: 125534 taacagtaaataacaaataat 125554
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>gb|AC158583.3| Mus musculus chromosome 3, clone RP24-318B11, complete sequence
          Length = 168986

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 241    taacagtaaataacaaataat 261
              |||||||||||||||||||||
Sbjct: 143458 taacagtaaataacaaataat 143478
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>emb|AL590386.5| Human DNA sequence from clone RP11-721G21 on chromosome 9, complete
             sequence
          Length = 90510

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 206   ttagcaacaaaataaaaataa 226
             |||||||||||||||||||||
Sbjct: 78878 ttagcaacaaaataaaaataa 78898
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>emb|AL672297.7| Mouse DNA sequence from clone RP23-137E3 on chromosome X, complete
             sequence
          Length = 195519

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 207   tagcaacaaaataaaaataat 227
             |||||||||||||||||||||
Sbjct: 71112 tagcaacaaaataaaaataat 71092
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>emb|AL807400.9| Mouse DNA sequence from clone RP23-196A4 on chromosome 2, complete
              sequence
          Length = 220579

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 4      tacataatataacacatataaatgt 28
              |||||||||||||||||||| ||||
Sbjct: 142330 tacataatataacacatatatatgt 142354
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>gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0077J22,
              complete sequence
          Length = 173903

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 214    aaaataaaaataatctaaca 233
              ||||||||||||||||||||
Sbjct: 162038 aaaataaaaataatctaaca 162057
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>gb|AC140985.3| Mus musculus BAC clone RP23-60H23 from chromosome 13, complete sequence
          Length = 222741

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   aacaaaataaaaataatcta 230
             ||||||||||||||||||||
Sbjct: 28326 aacaaaataaaaataatcta 28345
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>gb|AC130726.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0508G08,
             complete sequence
          Length = 141383

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 106   tccgagaactagatccattgaactatac 133
             ||||| || |||||||||||||||||||
Sbjct: 24431 tccgaaaaatagatccattgaactatac 24404
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 241      taacagtaaataacaaataa 260
                ||||||||||||||||||||
Sbjct: 31349932 taacagtaaataacaaataa 31349951
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>gb|AC122244.5| Mus musculus BAC clone RP23-149I9 from chromosome 10, complete sequence
          Length = 187474

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 211    aacaaaataaaaataatcta 230
              ||||||||||||||||||||
Sbjct: 147234 aacaaaataaaaataatcta 147215
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>emb|CT025604.10| Mouse DNA sequence from clone RP23-332P8 on chromosome 13, complete
             sequence
          Length = 200591

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   acaaaataaaaataatctaa 231
             ||||||||||||||||||||
Sbjct: 58504 acaaaataaaaataatctaa 58485
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>emb|CR407551.12| Zebrafish DNA sequence from clone DKEYP-44H3 in linkage group 6,
             complete sequence
          Length = 95004

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 199   aaaatggttagcaacaaaataaaaataa 226
             ||||||||| |||| |||||||||||||
Sbjct: 50652 aaaatggtttgcaaaaaaataaaaataa 50625
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>emb|CT010162.2| Pan troglodytes chromosome X BAC RP43-009H04, complete sequence
          Length = 195301

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 211   aacaaaataaaaataatctaacag 234
             |||||||||||||||| |||||||
Sbjct: 51446 aacaaaataaaaataacctaacag 51469
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>gb|AC122456.4| Mus musculus BAC clone RP24-265M23 from chromosome 16, complete
             sequence
          Length = 158610

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 69    agtgtatagtaattaagcatcaca 92
             ||||||| ||||||||||||||||
Sbjct: 46916 agtgtattgtaattaagcatcaca 46939
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>gb|AC117237.2| Mus musculus BAC clone RP23-431G18 from 13, complete sequence
          Length = 200110

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    aacaaaataaaaataatcta 230
              ||||||||||||||||||||
Sbjct: 189451 aacaaaataaaaataatcta 189470
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>gb|AC124120.5| Mus musculus chromosome 1, clone RP24-64M13, complete sequence
          Length = 242227

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      aatataacacatataaatgt 28
              ||||||||||||||||||||
Sbjct: 185516 aatataacacatataaatgt 185497
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>emb|AL139278.12| Human DNA sequence from clone RP4-639D23 on chromosome Xp21.1-21.3
             Contains part of the DMD gene for dystrophin (muscular
             dystrophy, Duchenne and Becker types), complete sequence
          Length = 95866

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 211   aacaaaataaaaataatctaacag 234
             |||||||||||||||| |||||||
Sbjct: 22599 aacaaaataaaaataacctaacag 22576
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>gb|AC131154.2| Homo sapiens 3 BAC RP13-489G4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 189348

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 69     agtgtatagtaattaagcatcaca 92
              ||||||| ||||||||||||||||
Sbjct: 180012 agtgtattgtaattaagcatcaca 179989
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>emb|AL078597.11|HSDJ442I1 Human DNA sequence from clone RP3-442I1 on chromosome 6q12-13
            Contains the 5' end of a novel gene, complete sequence
          Length = 138209

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 212  acaaaataaaaataatctaa 231
            ||||||||||||||||||||
Sbjct: 6136 acaaaataaaaataatctaa 6155
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>gb|AC161432.5| Mus musculus chromosome 1, clone RP23-453N14, complete sequence
          Length = 199303

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     aatataacacatataaatgt 28
             ||||||||||||||||||||
Sbjct: 92651 aatataacacatataaatgt 92632
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>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete
              sequence
          Length = 159091

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    taacagtaaataacaaataa 260
              ||||||||||||||||||||
Sbjct: 145868 taacagtaaataacaaataa 145849
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>gb|AC100862.2| Homo sapiens chromosome 8, clone RP11-1137L4, complete sequence
          Length = 149393

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   agcaacaaaataaaaataat 227
             ||||||||||||||||||||
Sbjct: 45725 agcaacaaaataaaaataat 45706
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>gb|AC096506.5| Homo sapiens Xp BAC RP11-64I1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 120135

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 211   aacaaaataaaaataatctaacag 234
             |||||||||||||||| |||||||
Sbjct: 66122 aacaaaataaaaataacctaacag 66099
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>gb|AC012413.10| Homo sapiens chromosome 8, clone RP11-401H2, complete sequence
          Length = 171226

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   agcaacaaaataaaaataat 227
             ||||||||||||||||||||
Sbjct: 19212 agcaacaaaataaaaataat 19231
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>gb|AC080093.6| Homo sapiens BAC clone RP11-957J11 from 7, complete sequence
          Length = 37522

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   aacaaaataaaaataatcta 230
             ||||||||||||||||||||
Sbjct: 35936 aacaaaataaaaataatcta 35955
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>emb|BX255959.11| Zebrafish DNA sequence from clone CH211-236E24 in linkage group 9,
           complete sequence
          Length = 39767

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 208 agcaacaaaataaaaataat 227
           ||||||||||||||||||||
Sbjct: 364 agcaacaaaataaaaataat 383
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>tpg|BK000023.1| TPA: TPA_exp: Mus musculus nuclear pore complex-associated intranuclear
             coiled-coil protein TPR (Tpr) gene, complete cds
          Length = 59413

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     aatataacacatataaatgt 28
             ||||||||||||||||||||
Sbjct: 48890 aatataacacatataaatgt 48909
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>gb|AC020732.4|AC020732 Homo sapiens BAC clone RP11-556H16 from X, complete sequence
          Length = 181559

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 211   aacaaaataaaaataatctaacag 234
             |||||||||||||||| |||||||
Sbjct: 64122 aacaaaataaaaataacctaacag 64099
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 106      tccgagaactagatccattgaactatac 133
                ||||| || |||||||||||||||||||
Sbjct: 12863885 tccgaaaaatagatccattgaactatac 12863858



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 214     aaaataaaaataatctaaca 233
               ||||||||||||||||||||
Sbjct: 2715518 aaaataaaaataatctaaca 2715537
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 241      taacagtaaataacaaataa 260
                ||||||||||||||||||||
Sbjct: 31440448 taacagtaaataacaaataa 31440467
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>gb|AC055764.23| Homo sapiens 3 BAC RP11-803P9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 74486

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   tagcaacaaaataaaaataa 226
             ||||||||||||||||||||
Sbjct: 62111 tagcaacaaaataaaaataa 62130
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>gb|AC068196.4| Homo sapiens BAC clone RP11-685J19 from 2, complete sequence
          Length = 162566

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   caacaaaataaaaataatct 229
             ||||||||||||||||||||
Sbjct: 37793 caacaaaataaaaataatct 37774
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>gb|AC154615.2| Mus musculus BAC clone RP23-257K8 from chromosome 13, complete sequence
          Length = 183054

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   acaaaataaaaataatctaa 231
             ||||||||||||||||||||
Sbjct: 21608 acaaaataaaaataatctaa 21589
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>gb|AC154323.3| Mus musculus BAC clone RP23-307K19 from chromosome 14, complete
             sequence
          Length = 191902

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   gtcctgatgcttgtgaagaa 165
             ||||||||||||||||||||
Sbjct: 17517 gtcctgatgcttgtgaagaa 17536
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>gb|AC104076.5| Homo sapiens BAC clone RP11-397C2 from 2, complete sequence
          Length = 174622

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    caacaaaataaaaataatct 229
              ||||||||||||||||||||
Sbjct: 143742 caacaaaataaaaataatct 143723
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>gb|AC154407.2| Mus musculus BAC clone RP24-257B4 from 14, complete sequence
          Length = 158436

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   gtcctgatgcttgtgaagaa 165
             ||||||||||||||||||||
Sbjct: 35090 gtcctgatgcttgtgaagaa 35071
to top
>emb|CR753890.27| Zebrafish DNA sequence from clone CH211-207D8 in linkage group 9,
             complete sequence
          Length = 201771

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   cattgttatacaacaaaatg 204
             ||||||||||||||||||||
Sbjct: 53749 cattgttatacaacaaaatg 53730
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>emb|BX950865.11| Zebrafish DNA sequence from clone DKEYP-100E12 in linkage group 6,
             complete sequence
          Length = 162517

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 121   cattgaactatacttcttcttctt 144
             ||||||||||| ||||||||||||
Sbjct: 68585 cattgaactattcttcttcttctt 68608
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 215     aaataaaaataatctaacag 234
               ||||||||||||||||||||
Sbjct: 2825383 aaataaaaataatctaacag 2825364


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,312,137
Number of Sequences: 3902068
Number of extensions: 5312137
Number of successful extensions: 136521
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 136227
Number of HSP's gapped (non-prelim): 294
length of query: 299
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 277
effective length of database: 17,147,199,772
effective search space: 4749774336844
effective search space used: 4749774336844
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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