ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags29c09 |
|---|---|
| Clone Library Name | barley_pub |
>PTBP2_ARATH (Q9FGL9) Polypyrimidine tract-binding protein homolog 2| Length = 429 Score = 42.7 bits (99), Expect = 0.001 Identities = 34/110 (30%), Positives = 43/110 (39%), Gaps = 17/110 (15%) Frame = -1 Query: 712 SRHTDLNVRINNERGRDYTGGN------SAPANHEPSILGPQPMLAVGST-----APPCA 566 SRHTDL++++NN+R RDYT N P + P PQ A G + P Sbjct: 321 SRHTDLSIKVNNDRSRDYTMPNPPVPMPQQPVQN-PYAGNPQQYHAAGGSHHQQQQQPQG 379 Query: 565 SQGVPQGYGAPGFQQGSNQAQMA------QHSVQGNQQMPNHQAMSFPGH 434 P G G+ G G + MA H G P H P H Sbjct: 380 GWVQPGGQGSMGMGGGGHNHYMAPPSSSSMHQGPGGHMPPQHYGGPGPMH 429
>OTX1_BRARE (Q91994) Homeobox protein OTX1 (ZOTX1)| Length = 323 Score = 38.1 bits (87), Expect = 0.027 Identities = 33/98 (33%), Positives = 47/98 (47%) Frame = -3 Query: 569 RQPGSPTRLWSPRVPARLKSSSNGTAFSPRKSTDAQSSSDVIPWPWKAAATSRSSNDARS 390 +Q GS T+ PA+ KSS R+ST ++SS P A +++ SS+ + S Sbjct: 97 QQSGSSTKTR----PAKKKSSPT------RESTGSESSGQFTP---PAVSSAGSSSSSSS 143 Query: 389 RLQRPAISSRSYAINAAVSGIWQPAVSSWCRAADDGLP 276 ISS S +I+ VS IW PA+S LP Sbjct: 144 STNNTGISSTSTSIST-VSSIWSPAISPGSAPPSVSLP 180
>PTBP1_ARATH (Q9MAC5) Polypyrimidine tract-binding protein homolog 1| Length = 399 Score = 37.4 bits (85), Expect = 0.046 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 5/82 (6%) Frame = -1 Query: 712 SRHTDLNVRINNERGRDYTGGNSAPANHEPSILGPQPMLAVGSTAPPCA-----SQGVPQ 548 SRHTDLNV+ +++ RDYT + S+L Q AV +APP +Q Sbjct: 320 SRHTDLNVKAFSDKSRDYT-------LPDLSLLVAQKGPAVSGSAPPAGWQNPQAQSQYS 372 Query: 547 GYGAPGFQQGSNQAQMAQHSVQ 482 GYG + S+ A S Q Sbjct: 373 GYGGSPYMYPSSDPNGASPSGQ 394 Score = 30.0 bits (66), Expect = 7.3 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -1 Query: 712 SRHTDLNVRINNERGRDYT 656 S HTDLN++ + R RDYT Sbjct: 194 SAHTDLNIKFQSHRSRDYT 212
>PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) Length = 557 Score = 35.8 bits (81), Expect = 0.13 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Frame = -1 Query: 712 SRHTDLNVRINNERGRDYTGGNSAPANHEPSILGPQPMLAVGS-----TAPPCASQGVPQ 548 S+ T LNV+ NN++ RDYT + +++PS+ Q M A +A P A G P Sbjct: 258 SKLTSLNVKYNNDKSRDYTRPDLPSGDNQPSL--DQTMAAAFGAPGIMSASPYAGAGFPP 315 Query: 547 GYGAP 533 + P Sbjct: 316 TFAIP 320
>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)| (Translocated in liposarcoma protein) (POMp75) (75 kDa DNA-pairing protein) Length = 526 Score = 35.4 bits (80), Expect = 0.17 Identities = 27/102 (26%), Positives = 36/102 (35%) Frame = -1 Query: 565 SQGVPQGYGAPGFQQGSNQAQMAQHSVQGNQQMPNHQAMSFPGHXXXXXXXXXXXXXXXX 386 +Q PQGYG+ G GS+Q+ + + Q S+PG+ Sbjct: 68 TQSTPQGYGSTG-GYGSSQSSQSSYGQQS----------SYPGYGQQPAPSSTSGSYGSS 116 Query: 385 XXXXPFPQGHMQSMPQFPVYGNQQFPPGAGPQMMAFQGQGGQ 260 + Q S Q P YG QQ G QG G Q Sbjct: 117 SQSSSYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQ 158
>DFRA_SYNY3 (P73212) Putative dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)| (Dihydrokaempferol 4-reductase) Length = 343 Score = 33.9 bits (76), Expect = 0.50 Identities = 18/41 (43%), Positives = 23/41 (56%) Frame = +2 Query: 452 RLMIGHLLISLD*MLCHLSLI*ALLEPWGSIALWDSLAGAW 574 R ++GH ISL +L HLS I L P ++ LW L AW Sbjct: 238 RYILGHENISLQGILAHLSTITGLPAPKNTVPLWLPLTFAW 278
>ALX1_CAEEL (P34552) Apoptosis-linked gene 2-interacting protein X 1 (Protein| pqn-58) (Protein YNK1) Length = 882 Score = 33.5 bits (75), Expect = 0.66 Identities = 40/142 (28%), Positives = 47/142 (33%), Gaps = 14/142 (9%) Frame = -1 Query: 658 TGGNSA---PANHEPSILGPQPML-AVGSTAPPCASQ-------GVPQGYGAPGFQQGSN 512 TGG +A PAN P P+P +V S PP +Q G P Y QQ Sbjct: 741 TGGTNAAQSPANAPPRPPPPRPAAPSVESPIPPPRTQQSMQATPGAPPQYNPYQQQQQPQ 800 Query: 511 QAQMAQHSVQGNQQMP--NHQAMSFPGHXXXXXXXXXXXXXXXXXXXXPFPQGHMQ-SMP 341 Q QH Q MP Q M P + +PQ Q P Sbjct: 801 MQQFQQHPGYYQQPMPYGQPQPMFQPQYQPTFAAPYPTFPGAFPSYQQQWPQQQQQGGFP 860 Query: 340 QFPVYGNQQFPPGAGPQMMAFQ 275 P +G Q G G FQ Sbjct: 861 PNPQFGQQNQQQGGGGGANPFQ 882
>S12A1_MOUSE (P55014) Solute carrier family 12 member 1 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 2) (BSC1) (Kidney-specific Na-K-Cl symporter) Length = 1095 Score = 33.5 bits (75), Expect = 0.66 Identities = 18/52 (34%), Positives = 25/52 (48%) Frame = -1 Query: 658 TGGNSAPANHEPSILGPQPMLAVGSTAPPCASQGVPQGYGAPGFQQGSNQAQ 503 TG S P + PS+L LA T P ++ V G G PG +Q N+ + Sbjct: 114 TGSVSGPKVNRPSLLEIHEQLAKNVTVAPGSADRVANGDGMPGDEQAENKEE 165
>PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) (Pyrimidine-binding protein) (PYBP) Length = 555 Score = 33.5 bits (75), Expect = 0.66 Identities = 20/69 (28%), Positives = 30/69 (43%) Frame = -1 Query: 712 SRHTDLNVRINNERGRDYTGGNSAPANHEPSILGPQPMLAVGSTAPPCASQGVPQGYGAP 533 S+ T LNV+ NN++ RDYT + + +PS+ Q + +GAP Sbjct: 257 SKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL-----------------DQTMAAAFGAP 299 Query: 532 GFQQGSNQA 506 G S A Sbjct: 300 GIMSASPYA 308
>PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) (57 kDa RNA-binding protein PPTB-1) Length = 531 Score = 33.1 bits (74), Expect = 0.86 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 15/67 (22%) Frame = -1 Query: 712 SRHTDLNVRINNERGRDYT-----GGNSAPANHE----------PSILGPQPMLAVGSTA 578 S+ T LNV+ NN++ RDYT G+S P+ + P++ G LA+ S A Sbjct: 258 SKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAA 317 Query: 577 PPCASQG 557 A+ G Sbjct: 318 AAAAAAG 324
>PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)| Length = 531 Score = 33.1 bits (74), Expect = 0.86 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 15/67 (22%) Frame = -1 Query: 712 SRHTDLNVRINNERGRDYT-----GGNSAPANHE----------PSILGPQPMLAVGSTA 578 S+ T LNV+ NN++ RDYT G+S P+ + P++ G LA+ S A Sbjct: 258 SKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAA 317 Query: 577 PPCASQG 557 A+ G Sbjct: 318 AAAAAAG 324
>ROD1_HUMAN (O95758) Regulator of differentiation 1 (Rod1)| Length = 521 Score = 33.1 bits (74), Expect = 0.86 Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 14/107 (13%) Frame = -1 Query: 712 SRHTDLNVRINNERGRDYTGGNSAPANHEPSILGPQPMLAVGSTAPPCASQ--------- 560 S+ T LNV+ NN++ RD+T + + +PS+ +P +A AP S Sbjct: 225 SKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL---EPPMAAAFGAPGIISSPYAGAAGFA 281 Query: 559 ---GVPQ--GYGAPGFQQGSNQAQMAQHSVQGNQQMPNHQAMSFPGH 434 G PQ G P + +V G +P A PG+ Sbjct: 282 PAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPG--ASGIPGN 326
>VE2_BPV4 (P08345) Regulatory protein E2| Length = 334 Score = 33.1 bits (74), Expect = 0.86 Identities = 34/109 (31%), Positives = 45/109 (41%), Gaps = 1/109 (0%) Frame = -3 Query: 587 LYSTT-MRQPGSPTRLWSPRVPARLKSSSNGTAFSPRKSTDAQSSSDVIPWPWKAAATSR 411 LYS + M Q +++ SP V + L+ S G + A+ S P R Sbjct: 105 LYSNSGMGQVHFESKVLSPSVTSSLRVGSTGGQRGTQTGDHARGRSRPSP---------R 155 Query: 410 SSNDARSRLQRPAISSRSYAINAAVSGIWQPAVSSWCRAADDGLPGAGR 264 SS DAR R QR SSRS + + + S P D LP GR Sbjct: 156 SSRDARGRQQRAQSSSRSRSRSRSRS----PTKGPHSSGRDTRLPSPGR 200
>EGL10_CAEEL (P49809) Regulator of G-protein signaling egl-10 (Egg-laying| defective protein 10) Length = 555 Score = 32.7 bits (73), Expect = 1.1 Identities = 19/61 (31%), Positives = 33/61 (54%) Frame = -3 Query: 524 ARLKSSSNGTAFSPRKSTDAQSSSDVIPWPWKAAATSRSSNDARSRLQRPAISSRSYAIN 345 A L S+SNG+A SPRK+ S+S P ++A + ++ + P +++ + IN Sbjct: 254 ASLPSTSNGSATSPRKNDQEPSTSSGGESPSTSSAAAGTATTSAPSTSTPPVTTITATIN 313 Query: 344 A 342 A Sbjct: 314 A 314
>ROD1_RAT (Q9Z118) Regulator of differentiation 1 (Rod1)| Length = 523 Score = 32.7 bits (73), Expect = 1.1 Identities = 25/76 (32%), Positives = 36/76 (47%) Frame = -1 Query: 712 SRHTDLNVRINNERGRDYTGGNSAPANHEPSILGPQPMLAVGSTAPPCASQGVPQGYGAP 533 S+ T LNV+ NN++ RD+T + + +PS+ +P +A AP S GA Sbjct: 227 SKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL---EPPMAAAFGAPGIMSSPYA---GAA 280 Query: 532 GFQQGSNQAQMAQHSV 485 GF Q A SV Sbjct: 281 GFAPAIAFPQAAGLSV 296
>ROD1_MOUSE (Q8BHD7) Regulator of differentiation 1 (Rod1)| Length = 523 Score = 32.7 bits (73), Expect = 1.1 Identities = 25/76 (32%), Positives = 36/76 (47%) Frame = -1 Query: 712 SRHTDLNVRINNERGRDYTGGNSAPANHEPSILGPQPMLAVGSTAPPCASQGVPQGYGAP 533 S+ T LNV+ NN++ RD+T + + +PS+ +P +A AP S GA Sbjct: 227 SKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL---EPPMAAAFGAPGIMSSPYA---GAA 280 Query: 532 GFQQGSNQAQMAQHSV 485 GF Q A SV Sbjct: 281 GFAPAIAFPQAAGLSV 296
>PAT1_YEAST (P25644) Topoisomerase II-associated protein PAT1| Length = 796 Score = 32.3 bits (72), Expect = 1.5 Identities = 35/127 (27%), Positives = 47/127 (37%), Gaps = 8/127 (6%) Frame = -1 Query: 652 GNSAPANHEPSILGP---QPMLAVGSTAPPCASQGVPQGYGAPG---FQQGSNQAQMAQH 491 G S P + GP +PM ++ STAPP A PQ AP Q Q ++ Sbjct: 86 GISGPRTDGTAAAGPLDLKPMESLWSTAPPPAMAPSPQSTMAPAPAPQQMAPLQPILSMQ 145 Query: 490 SVQGNQQMPNHQAMSFPGHXXXXXXXXXXXXXXXXXXXXPFPQGHMQSMPQFPVYGNQQF 311 ++ Q+ Q M+F GH Q +PQ P QQF Sbjct: 146 DLERQQRQMQQQFMNF------------------------HAMGHPQGLPQGP--PQQQF 179 Query: 310 P--PGAG 296 P P +G Sbjct: 180 PMQPASG 186
>S12A1_HUMAN (Q13621) Solute carrier family 12 member 1 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 2) (Kidney-specific Na-K-Cl symporter) Length = 1099 Score = 32.0 bits (71), Expect = 1.9 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = -1 Query: 658 TGGNSAPANHEPSILGPQPMLAVGSTAPPCASQGVPQGYGAPGFQQGSNQ 509 TG S P + PS+L LA P ++ V G G PG +Q N+ Sbjct: 118 TGSISGPKVNRPSLLEIHEQLAKNVAVTPSSADRVANGDGIPGDEQAENK 167
>PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) Length = 527 Score = 32.0 bits (71), Expect = 1.9 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Frame = -1 Query: 712 SRHTDLNVRINNERGRDYT-----GGNSAPANHE----------PSILGPQPMLAVGSTA 578 S+ T LNV+ NN++ RDYT G+S P+ + P++ G LA+ S A Sbjct: 257 SKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAA 316 Query: 577 PPCASQGVPQGYGAPGFQQGSNQAQMAQH 491 A+ + PG N + + Sbjct: 317 AAAAASRI----AIPGLAGAGNSVLLVSN 341
>PP65_HCMVT (P18139) 64 kDa lower matrix phosphoprotein (PP64) (GP64)| Length = 551 Score = 32.0 bits (71), Expect = 1.9 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 15/98 (15%) Frame = -3 Query: 521 RLKSSSNGTAFSPRKSTDAQSSSD-----VIPWP-WKAAATSRSSNDARSRLQRPAISSR 360 RLK+ S +P + TD S ++ V WP W+A +R+ + +Q + + Sbjct: 445 RLKAEST---VAPEEDTDEDSDNEIHNPAVFTWPPWQAGILARNLVPMVATVQGQNLKYQ 501 Query: 359 S--------YAINAAVSGIWQPAVS-SWCRAADDGLPG 273 Y I A + G+WQPA R D LPG Sbjct: 502 EFFWDANDIYRIFAELEGVWQPAAQPKRRRHRQDALPG 539
>PP65_HCMVA (P06725) 65 kDa lower matrix phosphoprotein (PP65) (Tegument| protein UL83) Length = 561 Score = 32.0 bits (71), Expect = 1.9 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 15/98 (15%) Frame = -3 Query: 521 RLKSSSNGTAFSPRKSTDAQSSSD-----VIPWP-WKAAATSRSSNDARSRLQRPAISSR 360 RLK+ S +P + TD S ++ V WP W+A +R+ + +Q + + Sbjct: 455 RLKAEST---VAPEEDTDEDSDNEIHNPAVFTWPPWQAGILARNLVPMVATVQGQNLKYQ 511 Query: 359 S--------YAINAAVSGIWQPAVS-SWCRAADDGLPG 273 Y I A + G+WQPA R D LPG Sbjct: 512 EFFWDANDIYRIFAELEGVWQPAAQPKRRRHRQDALPG 549
>YP95_YEAST (Q02891) Hypothetical UPF0017 protein YPL095c| Length = 456 Score = 31.6 bits (70), Expect = 2.5 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = +2 Query: 497 CHLSLI*ALLEPWGSIALWDSLAGAWW 577 C L+ AL PW + WD LA WW Sbjct: 268 CPLNAAVALSNPWDFVHTWDKLAHDWW 294
>SYM_HALSA (Q9HSA4) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 689 Score = 31.6 bits (70), Expect = 2.5 Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Frame = +1 Query: 247 QIED---TDLPAPGRPSSAARHQEETAGCHIPETAALIAYDLEEMAGLCNLDLASFE--- 408 +IED T+L A E+ G + + A +LE +A D SFE Sbjct: 538 KIEDDRVTELDEALAAKIEAASSEDADGEGMADETADDGIELEPLAE----DDISFEEFQ 593 Query: 409 --DLEVAAAFHGQGMTSLDDWASVDFLGLNAVPFELDLSLAGTLGLHSLVGLPGWRMVVL 582 DL V +G+ DD A ++ + E+ +AG LH L LPG R+VV+ Sbjct: 594 ALDLRVGEVVEAEGIEGADDLARLEV----DIGHEVRQIVAGIKQLHDLDALPGTRVVVV 649
>CBPA_DICDI (P35085) Calcium-binding protein| Length = 467 Score = 31.6 bits (70), Expect = 2.5 Identities = 43/141 (30%), Positives = 44/141 (31%), Gaps = 7/141 (4%) Frame = -1 Query: 655 GGNSAP-ANHEPSILGPQPMLAVGSTAPPCASQGVPQGYGAPGFQQGSNQAQMAQHSVQG 479 G S P A P PQ A GS PP P GAPG Q Sbjct: 32 GSQSTPGAPGAPGQYPPQQPGAPGSNLPPYPGTQQPGAPGAPGQYPPQQPGQYPPQQPGA 91 Query: 478 NQQMPNHQAMSFPGHXXXXXXXXXXXXXXXXXXXXPFPQGHMQS------MPQFPVYGNQ 317 Q P Q PG+ PQ QS P P Y Q Sbjct: 92 PGQYPPQQPGQ-PGYP---------------------PQQPGQSGQYPPQQPGQPGYPPQ 129 Query: 316 QFPPGAGPQMMAFQGQGGQYP 254 Q PGA Q QGQ GQYP Sbjct: 130 Q--PGAPGQYPPQQGQPGQYP 148 Score = 31.2 bits (69), Expect = 3.3 Identities = 42/146 (28%), Positives = 45/146 (30%), Gaps = 8/146 (5%) Frame = -1 Query: 652 GNSAPANHEPSILGPQPMLAVGSTAPPCASQGVPQGYGAPGF----QQGSNQAQMAQHSV 485 G P +P PQ G P Q PQ G PG Q G A Q V Sbjct: 135 GQYPPQQGQPGQYPPQQPGQPGQYPPQQQGQYPPQQPGQPGAYPPQQPGQPGAYPPQQGV 194 Query: 484 QGNQQMPNHQAMSFPGHXXXXXXXXXXXXXXXXXXXXPFPQGHMQSMPQFP----VYGNQ 317 Q + A PG PQG P P Y Q Sbjct: 195 QNT--LAKTGAPGQPGVPP--------------------PQGAYPGQPGVPPQQGAYPGQ 232 Query: 316 QFPPGAGPQMMAFQGQGGQYPRFGRP 239 Q P GA P QGQ G YP G+P Sbjct: 233 QPPMGAYPP----QGQPGAYPPQGQP 254
>PTBP2_RAT (Q66H20) Polypyrimidine tract-binding protein 2 (Neural| polypyrimidine tract-binding protein) (PTB-like protein) Length = 531 Score = 31.2 bits (69), Expect = 3.3 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 17/105 (16%) Frame = -1 Query: 712 SRHTDLNVRINNERGRDYT-----GGNSAPA---------NHEPSIL---GPQPMLAVGS 584 S+ +LNV+ NN++ RDYT G+ PA E S+L G LA+ + Sbjct: 255 SKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVPGALSPLAIPN 314 Query: 583 TAPPCASQGVPQGYGAPGFQQGSNQAQMAQHSVQGNQQMPNHQAM 449 A A+ + G PG G N + + N++M Q++ Sbjct: 315 AAAAAAAAAAGR-VGMPGVSAGGNTVLLVSNL---NEEMVTPQSL 355
>PTBP2_MOUSE (Q91Z31) Polypyrimidine tract-binding protein 2 (Brain-enriched| polypyrimidine tract-binding protein) (Brain-enriched PTB) (RRM-type RNA-binding protein brPTB) (Neural polypyrimidine tract-binding protein) Length = 531 Score = 31.2 bits (69), Expect = 3.3 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 17/105 (16%) Frame = -1 Query: 712 SRHTDLNVRINNERGRDYT-----GGNSAPA---------NHEPSIL---GPQPMLAVGS 584 S+ +LNV+ NN++ RDYT G+ PA E S+L G LA+ + Sbjct: 255 SKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVPGALSPLAIPN 314 Query: 583 TAPPCASQGVPQGYGAPGFQQGSNQAQMAQHSVQGNQQMPNHQAM 449 A A+ + G PG G N + + N++M Q++ Sbjct: 315 AAAAAAAAAAGR-VGMPGVSAGGNTVLLVSNL---NEEMVTPQSL 355
>PTBP2_HUMAN (Q9UKA9) Polypyrimidine tract-binding protein 2 (Neurally-enriched| homolog of PTB) (Neural polypyrimidine tract-binding protein) (PTB-like protein) Length = 531 Score = 31.2 bits (69), Expect = 3.3 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 17/105 (16%) Frame = -1 Query: 712 SRHTDLNVRINNERGRDYT-----GGNSAPA---------NHEPSIL---GPQPMLAVGS 584 S+ +LNV+ NN++ RDYT G+ PA E S+L G LA+ + Sbjct: 255 SKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVPGALSPLAIPN 314 Query: 583 TAPPCASQGVPQGYGAPGFQQGSNQAQMAQHSVQGNQQMPNHQAM 449 A A+ + G PG G N + + N++M Q++ Sbjct: 315 AAAAAAAAAAGR-VGMPGVSAGGNTVLLVSNL---NEEMVTPQSL 355
>RAVR2_MOUSE (Q7TPD6) Protein raver-2| Length = 673 Score = 31.2 bits (69), Expect = 3.3 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 4/76 (5%) Frame = -1 Query: 652 GNSAPANHEPSILGPQPMLAVGSTAPPCASQGVPQGYGAPG----FQQGSNQAQMAQHSV 485 G+ A+ +++ PQ LA G P S +P G PG ++ S +++ S Sbjct: 450 GHHGEAHKTSNLIPPQTTLAAGLGMLPFFSNQLPAGQAGPGRGTTQEKQSASVSISEASF 509 Query: 484 QGNQQMPNHQAMSFPG 437 G+Q H +FPG Sbjct: 510 SGSQ----HYLQTFPG 521
>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)| Length = 512 Score = 31.2 bits (69), Expect = 3.3 Identities = 27/110 (24%), Positives = 37/110 (33%) Frame = -1 Query: 589 GSTAPPCASQGVPQGYGAPGFQQGSNQAQMAQHSVQGNQQMPNHQAMSFPGHXXXXXXXX 410 G T ++Q PQGYG+ G GS+Q+ + + Q S+PG+ Sbjct: 60 GQTQNSYSTQSAPQGYGSAG-GYGSSQSSQSSYG----------QQSSYPGYGQQPAPSS 108 Query: 409 XXXXXXXXXXXXPFPQGHMQSMPQFPVYGNQQFPPGAGPQMMAFQGQGGQ 260 + Q Q YG QQ G QG G Q Sbjct: 109 TSGSYGSSSQSSGYGQPQGGGYGQQSGYGGQQQSYGQQQSYNPPQGYGQQ 158
>ERF2_YEAST (P05453) Eukaryotic peptide chain release factor GTP-binding| subunit (ERF2) (Translation release factor 3) (Polypeptide release factor 3) (ERF3) (ERF-3) (Omnipotent suppressor protein 2) (G1 to S phase transition protein 1) Length = 685 Score = 30.8 bits (68), Expect = 4.3 Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 5/105 (4%) Frame = -1 Query: 523 QGSNQAQMAQHSVQGNQQMPNHQAMSFPGHXXXXXXXXXXXXXXXXXXXXPFPQGHMQSM 344 QG+NQ Q+S GNQQ N++ + + G+ Q+ Sbjct: 6 QGNNQQNYQQYSQNGNQQQGNNRYQGYQAYNAQAQPAG----------------GYYQNY 49 Query: 343 PQFPVY---GNQQFPPGAGPQMMAFQGQGG--QYPRFGRPLHPFN 224 + Y G QQ+ P AG Q + QGG QY G FN Sbjct: 50 QGYSGYQQGGYQQYNPDAGYQQQ-YNPQGGYQQYNPQGGYQQQFN 93
>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID| domain-containing protein 1A) (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like pr Length = 2285 Score = 30.8 bits (68), Expect = 4.3 Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 10/73 (13%) Frame = -1 Query: 658 TGGNSAPANHEPSILGPQPMLA------VGSTAPPCASQGVP----QGYGAPGFQQGSNQ 509 +GG P P P + G T P QG P QG+G PG GS Sbjct: 367 SGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQT 426 Query: 508 AQMAQHSVQGNQQ 470 Q ++QG Q Sbjct: 427 PQRYPMTMQGRAQ 439
>XTP3B_PONPY (Q5R8S4) XTP3-transactivated gene B protein homolog precursor| Length = 483 Score = 30.4 bits (67), Expect = 5.6 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -1 Query: 688 RINNERGRDYTGGNSAPANHEPSILGPQPMLAVGST 581 R N E T PA H+P +G QP+L VG+T Sbjct: 289 RRNKEEDLQSTKEERFPAIHKPIAIGSQPVLTVGTT 324
>UMP1_ARATH (Q9LKA5) Unknown mitochondrial protein At3g15000| Length = 395 Score = 30.4 bits (67), Expect = 5.6 Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 6/73 (8%) Frame = -1 Query: 655 GGNSAPANH----EPSILGPQPMLAVGSTAPPCASQGVPQGYGA-PGFQQGSNQAQMAQH 491 GG P N+ P+ G P +G PP G P YGA P Q G Q + Sbjct: 307 GGPRPPQNYGGTPPPNYGGAPPANNMGGAPPPNYGGGPPPQYGAVPPPQYGGAPPQNNNY 366 Query: 490 SVQGN-QQMPNHQ 455 QG+ Q P +Q Sbjct: 367 QQQGSGMQQPQYQ 379 Score = 30.0 bits (66), Expect = 7.3 Identities = 22/77 (28%), Positives = 31/77 (40%) Frame = -1 Query: 682 NNERGRDYTGGNSAPANHEPSILGPQPMLAVGSTAPPCASQGVPQGYGAPGFQQGSNQAQ 503 N ER R+ G P P + GP P +G +APP G G P G N Sbjct: 229 NFERRRENMAGGPPP--QRPPMGGPPPPPHIGGSAPPPPHMG---GSAPPPPHMGQNYGP 283 Query: 502 MAQHSVQGNQQMPNHQA 452 +++ G + P + A Sbjct: 284 PPPNNMGGPRHPPPYGA 300
>SOX17_HUMAN (Q9H6I2) Transcription factor SOX-17| Length = 414 Score = 30.4 bits (67), Expect = 5.6 Identities = 27/83 (32%), Positives = 32/83 (38%), Gaps = 11/83 (13%) Frame = -1 Query: 664 DYTGGNSAPANHEPSILGPQPM--LAVGSTAPPCA------SQGVPQGYGAPGFQ---QG 518 DY G PA LGP+P G APP A + G P G GFQ Q Sbjct: 258 DYAGPPEPPAGPMHPRLGPEPAGPSIPGLLAPPSALHVYYGAMGSPGAGGGRGFQMQPQH 317 Query: 517 SNQAQMAQHSVQGNQQMPNHQAM 449 +Q Q H Q P +A+ Sbjct: 318 QHQHQHQHHPPGPGQPSPPPEAL 340
>CLIC6_RAT (Q811Q2) Chloride intracellular channel 6| Length = 612 Score = 30.4 bits (67), Expect = 5.6 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Frame = -1 Query: 676 ERGRDYTGGNSAPANHEPSILGP--QPMLAVGSTAPPCASQGVPQGYGAPGFQQGSNQAQ 503 E G++ GG++ + P + GP M P S+G PQG G Q + Sbjct: 159 ESGQEALGGSAPESQINPEVQGPVGDNMDTEAPAGEPQGSEGEPQGGGESSPQPQDEAIE 218 Query: 502 MAQHSVQGNQ 473 +A V G++ Sbjct: 219 IAAAEVGGHE 228
>PALI_NEUCR (Q7SFN5) pH-response regulator protein palI/rim-9| Length = 705 Score = 30.0 bits (66), Expect = 7.3 Identities = 43/161 (26%), Positives = 52/161 (32%), Gaps = 14/161 (8%) Frame = -1 Query: 679 NERGRD------YTGGNSAPANHEPSILGPQPMLAVGSTAPPCASQG----VPQGYGAPG 530 N RGR Y G P P G P G PP +G P+GYG PG Sbjct: 322 NSRGRGGMPPGGYRGRGGFPG---PGRGGGPPQNGRGGYGPPGRGRGGYGPPPRGYGGPG 378 Query: 529 FQQGSNQAQMAQHSVQGNQQMPNHQAMSFPGHXXXXXXXXXXXXXXXXXXXXPFPQGHMQ 350 + G G + P+ A PG P + Q Sbjct: 379 PRGGRGPPPQGYQG--GPDRRPSPGAPYGPGPGVGTYGPSQPS-----------PYANRQ 425 Query: 349 SM--PQF--PVYGNQQFPPGAGPQMMAFQGQGGQYPRFGRP 239 PQF P YGN + P GPQ A+ + PR P Sbjct: 426 QSPGPQFAAPGYGNPEQP---GPQYSAYNPRRVSLPRAESP 463
>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)| Length = 644 Score = 30.0 bits (66), Expect = 7.3 Identities = 22/86 (25%), Positives = 41/86 (47%) Frame = -3 Query: 584 YSTTMRQPGSPTRLWSPRVPARLKSSSNGTAFSPRKSTDAQSSSDVIPWPWKAAATSRSS 405 +++ P +PT +P A ++ A SP S+ + S++ AAA + ++ Sbjct: 167 FASISASPSTPTTTLAPPTTA----AAGALAGSPTSSSPSSSAAS-------AAAAAAAA 215 Query: 404 NDARSRLQRPAISSRSYAINAAVSGI 327 A + L A++S +Y N A SG+ Sbjct: 216 AAAAADLGAAAVASAAYGWNTAYSGL 241
>YBM6_YEAST (P38216) Protein YBR016W| Length = 128 Score = 30.0 bits (66), Expect = 7.3 Identities = 36/124 (29%), Positives = 42/124 (33%), Gaps = 1/124 (0%) Frame = -1 Query: 664 DYTGGNSAPANHEPSILGPQPMLAVGSTAPPC-ASQGVPQGYGAPGFQQGSNQAQMAQHS 488 DY GG + G + + S PP A Q Q G P QQ Q QH Sbjct: 5 DYYGGTA----------GEKSQYSRPSNPPPSSAHQNKTQERGYPPQQQQQYYQQQQQHP 54 Query: 487 VQGNQQMPNHQAMSFPGHXXXXXXXXXXXXXXXXXXXXPFPQGHMQSMPQFPVYGNQQFP 308 NQQ N Q + G+ QG+ Q Q PVY QQ P Sbjct: 55 GYYNQQGYNQQGYNQQGYNQQGYNQQGYN-----------QQGYNQQGHQQPVYVQQQ-P 102 Query: 307 PGAG 296 P G Sbjct: 103 PQRG 106
>SET2_CAEEL (Q18221) Protein set-2| Length = 1507 Score = 30.0 bits (66), Expect = 7.3 Identities = 28/75 (37%), Positives = 35/75 (46%) Frame = -3 Query: 581 STTMRQPGSPTRLWSPRVPARLKSSSNGTAFSPRKSTDAQSSSDVIPWPWKAAATSRSSN 402 ST+ +PT P+ SSS+ A S R S D +S SD P + TS SN Sbjct: 879 STSRNSSVAPT----PQRTVSTSSSSSSAATSARVSED-ESDSDSTPGEVQRRKTSVLSN 933 Query: 401 DARSRLQRPAISSRS 357 D R R R + SS S Sbjct: 934 DKRRR--RASFSSTS 946
>S12A1_RABIT (P55015) Solute carrier family 12 member 1 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 2) (Kidney-specific Na-K-Cl symporter) Length = 1099 Score = 30.0 bits (66), Expect = 7.3 Identities = 16/52 (30%), Positives = 23/52 (44%) Frame = -1 Query: 658 TGGNSAPANHEPSILGPQPMLAVGSTAPPCASQGVPQGYGAPGFQQGSNQAQ 503 TG S P + PS+L LA P ++ V G G PG + N+ + Sbjct: 117 TGSVSGPKVNRPSLLEIHEQLAKNVAVTPGSADRVANGEGMPGEEHAENKEE 168
>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)| Length = 1362 Score = 30.0 bits (66), Expect = 7.3 Identities = 23/53 (43%), Positives = 26/53 (49%), Gaps = 11/53 (20%) Frame = -1 Query: 655 GGNSAPANHEPSI---LGPQPMLAVGSTAPPCAS--------QGVPQGYGAPG 530 GGN A A ++PS GP PM +G PP AS QGVP G PG Sbjct: 72 GGNFA-AQYDPSKAADFGPGPMGLMGPRGPPGASGPPGPPGFQGVPGEPGEPG 123
>ATX2L_MOUSE (Q7TQH0) Ataxin-2-like protein| Length = 1049 Score = 30.0 bits (66), Expect = 7.3 Identities = 21/75 (28%), Positives = 31/75 (41%) Frame = -1 Query: 658 TGGNSAPANHEPSILGPQPMLAVGSTAPPCASQGVPQGYGAPGFQQGSNQAQMAQHSVQG 479 TG +AP H + PQ ML PP G PQG P + + + + G Sbjct: 975 TGVTAAPPPHPGAPHPPQVMLL----HPPQGHGGPPQGAVPPSGVPALSASTPSPYPYIG 1030 Query: 478 NQQMPNHQAMSFPGH 434 + Q+ +H + P H Sbjct: 1031 HPQVQSHPSQQLPFH 1045
>PO6F2_HUMAN (P78424) POU domain, class 6, transcription factor 2| (Retina-derived POU-domain factor 1) (RPF-1) Length = 684 Score = 30.0 bits (66), Expect = 7.3 Identities = 23/73 (31%), Positives = 26/73 (35%) Frame = -1 Query: 658 TGGNSAPANHEPSILGPQPMLAVGSTAPPCASQGVPQGYGAPGFQQGSNQAQMAQHSVQG 479 T + PA PS QP+ PP ASQ P Q Q HS Sbjct: 194 TNQHPQPAPQAPSQSQQQPLQPTPPQQPPPASQQPPAPTSQLQQAPQPQQHQPHSHSHNQ 253 Query: 478 NQQMPNHQAMSFP 440 NQ P Q+ S P Sbjct: 254 NQPSPTQQSSSPP 266
>VLPF_MYCHR (Q49538) Variant surface antigen F precursor (VLPF prolipoprotein)| Length = 174 Score = 30.0 bits (66), Expect = 7.3 Identities = 16/40 (40%), Positives = 19/40 (47%) Frame = -1 Query: 589 GSTAPPCASQGVPQGYGAPGFQQGSNQAQMAQHSVQGNQQ 470 GS + P QG QG P +QG+NQ QGN Q Sbjct: 54 GSGSTPTPEQGNNQGGSTPTPEQGNNQGGSTPTPEQGNNQ 93
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 30.0 bits (66), Expect = 7.3 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 5/59 (8%) Frame = -1 Query: 616 LGPQPMLAVGSTAPPCASQGVPQ--GYGAPGFQQGSNQAQMAQHSVQG---NQQMPNHQ 455 +GP M+ PP SQGV Q G G PG M ++Q QQ P+HQ Sbjct: 1673 VGPGGMVKPPYAMPPPPSQGVGQQVGQGPPGGMMSQKPPPMPGQAMQQQPLQQQPPSHQ 1731
>SF3A1_ARATH (Q8RXF1) Probable splicing factor 3 subunit 1| Length = 785 Score = 29.6 bits (65), Expect = 9.5 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Frame = -1 Query: 616 LGPQPMLAVGSTAPPCASQ--GVPQGYGAPGFQQGSNQAQMAQHSVQGNQQM 467 L P P LA+ PP ++Q G P+ G P Q Q Q+ G+ QM Sbjct: 558 LPPPPNLALNLPRPPPSAQYPGAPRPLGVPMMQPMHQQHQLTMPGPPGHPQM 609
>DOA_DROME (P49762) Serine/threonine-protein kinase Doa (EC 2.7.12.1) (Protein| darkener of apricot) Length = 832 Score = 29.6 bits (65), Expect = 9.5 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 4/32 (12%) Frame = -1 Query: 319 QQFPPGAGPQMMAFQGQGGQ----YPRFGRPL 236 QQ PPG PQM +Q Q YPR G PL Sbjct: 238 QQQPPGMMPQMYGYQAPQQQSKIGYPRTGAPL 269
>LGP1_MOUSE (Q99J23) Protein D11Lgp1 precursor| Length = 532 Score = 29.6 bits (65), Expect = 9.5 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%) Frame = +3 Query: 522 CWNPGAP*PCGTPWLAHG-GAVEP 590 C P +P PC PWL H G V P Sbjct: 154 CVTPTSPWPCSVPWLGHALGRVSP 177
>APA_MYCAV (Q48919) Alanine and proline-rich secreted protein apa precursor| (45/47 kDa antigen) (Fibronectin attachment protein) (FAP-A) Length = 381 Score = 29.6 bits (65), Expect = 9.5 Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Frame = -1 Query: 655 GGNSAPANHEPSILGPQPMLAVGSTAPPC---ASQGVPQGYGAPGFQQGSNQA 506 GG APA P P A G TAP A+ G P GAP + G A Sbjct: 312 GGPGAPAPGAPGAPAPGAPAAPGVTAPAAPAPAAPGAPAAPGAPAPEPGQAPA 364 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 107,494,652 Number of Sequences: 219361 Number of extensions: 2373822 Number of successful extensions: 7896 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 7199 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7825 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7196276819 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
