| Clone Name | rbags28n07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469588.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1281 Score = 131 bits (66), Expect = 3e-27 Identities = 201/246 (81%) Strand = Plus / Minus Query: 245 cccaaaagcttgatgttttgatgtcatctttggtcatcaacttagagtaatcctcatggt 304 |||||||||||| |||| ||||||||||| ||||||||| ||||| ||||||||| Sbjct: 903 cccaaaagcttgccattttaatgtcatctttcaccatcaacttggagtactcctcatggc 844 Query: 305 tgtacagtacattgttcttccctccaaactcaacaggaagaacttctggatcaatgtggc 364 |||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||| Sbjct: 843 tgtacaccacattgttctttcctccaaactctacaggaaggacttctggatcaatgtact 784 Query: 365 tgtacattgtcttcatgctctcttcgttctccttgtacacaaagttcagtttctgggctg 424 ||| || ||||||||||||| ||||||| | ||| ||||| |||| |||||| || Sbjct: 783 tgtgcaggatcttcatgctctcctcgttcttcaggtatacaaaattcaccttctggattg 724 Query: 425 atttcgggtcaatcagtactttgagaaccttaaaagaagcctcaaatactttgggcggat 484 |||| ||||||| | ||||| |||||| || ||||||||||||||||||| |||| Sbjct: 723 attttgggtcaaggaaatgtttgacaaccttccaaaaagcctcaaatactttggggggat 664 Query: 485 tgaaca 490 | |||| Sbjct: 663 taaaca 658
>dbj|AK068261.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149C21, full insert sequence Length = 1334 Score = 131 bits (66), Expect = 3e-27 Identities = 201/246 (81%) Strand = Plus / Minus Query: 245 cccaaaagcttgatgttttgatgtcatctttggtcatcaacttagagtaatcctcatggt 304 |||||||||||| |||| ||||||||||| ||||||||| ||||| ||||||||| Sbjct: 953 cccaaaagcttgccattttaatgtcatctttcaccatcaacttggagtactcctcatggc 894 Query: 305 tgtacagtacattgttcttccctccaaactcaacaggaagaacttctggatcaatgtggc 364 |||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||| Sbjct: 893 tgtacaccacattgttctttcctccaaactctacaggaaggacttctggatcaatgtact 834 Query: 365 tgtacattgtcttcatgctctcttcgttctccttgtacacaaagttcagtttctgggctg 424 ||| || ||||||||||||| ||||||| | ||| ||||| |||| |||||| || Sbjct: 833 tgtgcaggatcttcatgctctcctcgttcttcaggtatacaaaattcaccttctggattg 774 Query: 425 atttcgggtcaatcagtactttgagaaccttaaaagaagcctcaaatactttgggcggat 484 |||| ||||||| | ||||| |||||| || ||||||||||||||||||| |||| Sbjct: 773 attttgggtcaaggaaatgtttgacaaccttccaaaaagcctcaaatactttggggggat 714 Query: 485 tgaaca 490 | |||| Sbjct: 713 taaaca 708
>gb|AC146936.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1154F06 map near C10769, complete sequence Length = 194856 Score = 119 bits (60), Expect = 1e-23 Identities = 159/192 (82%) Strand = Plus / Plus Query: 245 cccaaaagcttgatgttttgatgtcatctttggtcatcaacttagagtaatcctcatggt 304 |||||||||||| |||| ||||||||||| ||||||||| ||||| ||||||||| Sbjct: 7873 cccaaaagcttgccattttaatgtcatctttcaccatcaacttggagtactcctcatggc 7932 Query: 305 tgtacagtacattgttcttccctccaaactcaacaggaagaacttctggatcaatgtggc 364 |||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||| Sbjct: 7933 tgtacaccacattgttctttcctccaaactctacaggaaggacttctggatcaatgtact 7992 Query: 365 tgtacattgtcttcatgctctcttcgttctccttgtacacaaagttcagtttctgggctg 424 ||| || ||||||||||||| ||||||| | ||| ||||| |||| |||||| || Sbjct: 7993 tgtgcaggatcttcatgctctcctcgttcttcaggtatacaaaattcaccttctggattg 8052 Query: 425 atttcgggtcaa 436 |||| ||||||| Sbjct: 8053 attttgggtcaa 8064 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 461 aagcctcaaatactttgggcggattgaaca 490 ||||||||||||||||||| ||||| |||| Sbjct: 8236 aagcctcaaatactttggggggattaaaca 8265
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 119 bits (60), Expect = 1e-23 Identities = 159/192 (82%) Strand = Plus / Minus Query: 245 cccaaaagcttgatgttttgatgtcatctttggtcatcaacttagagtaatcctcatggt 304 |||||||||||| |||| ||||||||||| ||||||||| ||||| ||||||||| Sbjct: 29131418 cccaaaagcttgccattttaatgtcatctttcaccatcaacttggagtactcctcatggc 29131359 Query: 305 tgtacagtacattgttcttccctccaaactcaacaggaagaacttctggatcaatgtggc 364 |||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||| Sbjct: 29131358 tgtacaccacattgttctttcctccaaactctacaggaaggacttctggatcaatgtact 29131299 Query: 365 tgtacattgtcttcatgctctcttcgttctccttgtacacaaagttcagtttctgggctg 424 ||| || ||||||||||||| ||||||| | ||| ||||| |||| |||||| || Sbjct: 29131298 tgtgcaggatcttcatgctctcctcgttcttcaggtatacaaaattcaccttctggattg 29131239 Query: 425 atttcgggtcaa 436 |||| ||||||| Sbjct: 29131238 attttgggtcaa 29131227 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Minus Query: 461 aagcctcaaatactttgggcggattgaaca 490 ||||||||||||||||||| ||||| |||| Sbjct: 29131055 aagcctcaaatactttggggggattaaaca 29131026
>gb|AC137997.2| Oryza sativa chromosome 3 BAC OJ1499_D04 genomic sequence, complete sequence Length = 91084 Score = 119 bits (60), Expect = 1e-23 Identities = 159/192 (82%) Strand = Plus / Plus Query: 245 cccaaaagcttgatgttttgatgtcatctttggtcatcaacttagagtaatcctcatggt 304 |||||||||||| |||| ||||||||||| ||||||||| ||||| ||||||||| Sbjct: 39958 cccaaaagcttgccattttaatgtcatctttcaccatcaacttggagtactcctcatggc 40017 Query: 305 tgtacagtacattgttcttccctccaaactcaacaggaagaacttctggatcaatgtggc 364 |||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||| Sbjct: 40018 tgtacaccacattgttctttcctccaaactctacaggaaggacttctggatcaatgtact 40077 Query: 365 tgtacattgtcttcatgctctcttcgttctccttgtacacaaagttcagtttctgggctg 424 ||| || ||||||||||||| ||||||| | ||| ||||| |||| |||||| || Sbjct: 40078 tgtgcaggatcttcatgctctcctcgttcttcaggtatacaaaattcaccttctggattg 40137 Query: 425 atttcgggtcaa 436 |||| ||||||| Sbjct: 40138 attttgggtcaa 40149 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 461 aagcctcaaatactttgggcggattgaaca 490 ||||||||||||||||||| ||||| |||| Sbjct: 40321 aagcctcaaatactttggggggattaaaca 40350
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 119 bits (60), Expect = 1e-23 Identities = 159/192 (82%) Strand = Plus / Minus Query: 245 cccaaaagcttgatgttttgatgtcatctttggtcatcaacttagagtaatcctcatggt 304 |||||||||||| |||| ||||||||||| ||||||||| ||||| ||||||||| Sbjct: 29222840 cccaaaagcttgccattttaatgtcatctttcaccatcaacttggagtactcctcatggc 29222781 Query: 305 tgtacagtacattgttcttccctccaaactcaacaggaagaacttctggatcaatgtggc 364 |||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||| Sbjct: 29222780 tgtacaccacattgttctttcctccaaactctacaggaaggacttctggatcaatgtact 29222721 Query: 365 tgtacattgtcttcatgctctcttcgttctccttgtacacaaagttcagtttctgggctg 424 ||| || ||||||||||||| ||||||| | ||| ||||| |||| |||||| || Sbjct: 29222720 tgtgcaggatcttcatgctctcctcgttcttcaggtatacaaaattcaccttctggattg 29222661 Query: 425 atttcgggtcaa 436 |||| ||||||| Sbjct: 29222660 attttgggtcaa 29222649 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Minus Query: 461 aagcctcaaatactttgggcggattgaaca 490 ||||||||||||||||||| ||||| |||| Sbjct: 29222477 aagcctcaaatactttggggggattaaaca 29222448
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 257 atgttttgatgtcatctttggtc 279 ||||||||||||||||||||||| Sbjct: 1424634 atgttttgatgtcatctttggtc 1424656
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 257 atgttttgatgtcatctttggtc 279 ||||||||||||||||||||||| Sbjct: 1425497 atgttttgatgtcatctttggtc 1425519
>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence Length = 3214944 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 tattttgtagttacatttgttt 55 |||||||||||||||||||||| Sbjct: 618203 tattttgtagttacatttgttt 618224
>gb|AC093859.3| Homo sapiens BAC clone RP11-538A7 from 2, complete sequence Length = 107842 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 ctgaccaatgtttctcaacttt 166 |||||||||||||||||||||| Sbjct: 91784 ctgaccaatgtttctcaacttt 91763
>gb|AC123713.13| Mus musculus chromosome 7, clone RP23-391D20, complete sequence Length = 183590 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 456 aaaagaagcctcaaatacttt 476 ||||||||||||||||||||| Sbjct: 166151 aaaagaagcctcaaatacttt 166131
>gb|AC137110.11| Mus musculus chromosome 7, clone RP23-399P8, complete sequence Length = 199827 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 456 aaaagaagcctcaaatacttt 476 ||||||||||||||||||||| Sbjct: 152940 aaaagaagcctcaaatacttt 152960
>gb|AC161439.3| Mus musculus chromosome 7, clone RP24-297G19, complete sequence Length = 192731 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 ttacatttgtttatttctttt 64 ||||||||||||||||||||| Sbjct: 79566 ttacatttgtttatttctttt 79546
>gb|AC111022.9| Mus musculus chromosome 7, clone RP23-157K2, complete sequence Length = 208225 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 44 ttacatttgtttatttctttt 64 ||||||||||||||||||||| Sbjct: 198152 ttacatttgtttatttctttt 198172
>emb|AL356074.11| Human DNA sequence from clone RP11-265G20 on chromosome 10, complete sequence Length = 70187 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 232 ttaccatctgccccccaaaag 252 ||||||||||||||||||||| Sbjct: 34883 ttaccatctgccccccaaaag 34903
>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome Length = 1581384 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 tttgtaatacagcaaattcac 25 ||||||||||||||||||||| Sbjct: 890888 tttgtaatacagcaaattcac 890868
>gb|AC154324.2| Mus musculus BAC clone RP24-494E12 from chromosome 14, complete sequence Length = 198197 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 35 attttgtagttacatttgtttattt 59 |||||| |||||||||||||||||| Sbjct: 121873 attttgcagttacatttgtttattt 121897
>emb|BX000486.13| Zebrafish DNA sequence from clone DKEY-149M16 in linkage group 10, complete sequence Length = 195419 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 ttccctccaaactcaacagga 342 ||||||||||||||||||||| Sbjct: 23262 ttccctccaaactcaacagga 23242
>gb|AC160061.6| Mus musculus 10 BAC RP24-496L10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 174662 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 ttgtagttacatttgtttatt 58 ||||||||||||||||||||| Sbjct: 60212 ttgtagttacatttgtttatt 60232
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 492 aaatgcaaccgcaagcctctccgggtaat 520 ||||| |||||||||||||| |||||||| Sbjct: 25322207 aaatggaaccgcaagcctcttcgggtaat 25322235
>emb|BX005230.9| Zebrafish DNA sequence from clone CH211-288J12 in linkage group 10, complete sequence Length = 67465 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 474 tttgggcggattgaacataaa 494 ||||||||||||||||||||| Sbjct: 26078 tttgggcggattgaacataaa 26098
>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23 Length = 147336 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 492 aaatgcaaccgcaagcctctccgggtaat 520 ||||| |||||||||||||| |||||||| Sbjct: 97392 aaatggaaccgcaagcctcttcgggtaat 97420
>gb|AC105944.8| Mus musculus chromosome 14, clone RP24-473K24, complete sequence Length = 156945 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 35 attttgtagttacatttgtttattt 59 |||||| |||||||||||||||||| Sbjct: 136347 attttgcagttacatttgtttattt 136323
>gb|AC092203.16| Mus musculus strain C57BL/6J chromosome 3 clone rp23-422n18, complete sequence Length = 188880 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 44 ttacatttgtttatttctttttata 68 |||||||||||||||| |||||||| Sbjct: 173431 ttacatttgtttatttatttttata 173407
>gb|AC092202.28| Mus musculus strain C57BL/6J chromosome 3 clone rp23-407b16, complete sequence Length = 196249 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 44 ttacatttgtttatttctttttata 68 |||||||||||||||| |||||||| Sbjct: 8405 ttacatttgtttatttatttttata 8381
>gb|AC132383.5| Mus musculus BAC clone RP23-434M19 from 10, complete sequence Length = 212242 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 tttgtttatttctttttatac 69 ||||||||||||||||||||| Sbjct: 45342 tttgtttatttctttttatac 45362
>gb|AC153501.2| Mus musculus 10 BAC RP23-79J15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 251631 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 ttacatttgtttatttcttt 63 |||||||||||||||||||| Sbjct: 109002 ttacatttgtttatttcttt 109021
>gb|AC149418.2| Phakopsora pachyrhizi clone JGIAFNA-77J14, complete sequence Length = 43981 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 248 aaaagcttgatgttttgatgtcatcttt 275 |||| |||||||| |||||||||||||| Sbjct: 21301 aaaaccttgatgtcttgatgtcatcttt 21328
>ref|XM_637113.1| Dictyostelium discoideum hypothetical protein (DDB0204503), partial mRNA Length = 1365 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 gtattttgtagttacatttg 52 |||||||||||||||||||| Sbjct: 162 gtattttgtagttacatttg 143
>ref|XM_630300.1| Dictyostelium discoideum cyclic GMP-binding protein (DDB0191359), partial mRNA Length = 7896 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 gttacatttgtttatttcttttta 66 ||||||||||||| |||||||||| Sbjct: 1076 gttacatttgtttttttcttttta 1053
>gb|AC114662.11| Mus musculus chromosome 1, clone RP24-170M24, complete sequence Length = 131587 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tgtttatttctttttataca 70 |||||||||||||||||||| Sbjct: 46769 tgtttatttctttttataca 46750
>gb|AC183673.2| Pan troglodytes BAC clone CH251-540O10 from chromosome 1, complete sequence Length = 185717 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 45 tacatttgtttatttctttttata 68 ||||||||| |||||||||||||| Sbjct: 23731 tacatttgtctatttctttttata 23708
>gb|AC158608.10| Mus musculus 10 BAC RP24-405N1 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 181588 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 tttgtttatttctttttatacagc 72 |||||||||||| ||||||||||| Sbjct: 159342 tttgtttatttcattttatacagc 159319
>gb|AC165143.3| Mus musculus BAC clone RP24-391N16 from chromosome 7, complete sequence Length = 165017 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 aactcaacaggaagaacttc 350 |||||||||||||||||||| Sbjct: 89287 aactcaacaggaagaacttc 89268
>emb|AJ012166.1|CFA012166 Canis familiaris TCTA gene, AMT gene, NICN1 gene, DAG1 gene and BSN gene (partial) Length = 162073 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 atttgtttatttctttttat 67 |||||||||||||||||||| Sbjct: 33752 atttgtttatttctttttat 33733
>gb|AC011436.7|ATAC011436 Arabidopsis thaliana chromosome III BAC F3L24 genomic sequence, complete sequence Length = 106688 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 tagttacatttgtttatttc 60 |||||||||||||||||||| Sbjct: 10811 tagttacatttgtttatttc 10792
>gb|AC009326.8|ATAC009326 Arabidopsis thaliana chromosome III P1 MZB10 genomic sequence, complete sequence Length = 85561 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 tagttacatttgtttatttc 60 |||||||||||||||||||| Sbjct: 75135 tagttacatttgtttatttc 75116
>gb|AC114823.4| Mus musculus BAC clone RP23-209L10 from 2, complete sequence Length = 170884 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 agttacatttgtttatttct 61 |||||||||||||||||||| Sbjct: 119881 agttacatttgtttatttct 119900
>ref|XM_740018.1| Plasmodium chabaudi chabaudi u5 small nuclear ribonucleoprotein-specific protein (PC000329.03.0) partial mRNA Length = 4614 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 tttgtttatttctttttata 68 |||||||||||||||||||| Sbjct: 1318 tttgtttatttctttttata 1299
>gb|AC114652.7| Mus musculus chromosome 18, clone RP24-156O17, complete sequence Length = 148737 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 358 atgtggctgtacattgtcttcatg 381 |||||| ||||||||||||||||| Sbjct: 77705 atgtgggtgtacattgtcttcatg 77728
>gb|AC145770.1| Pan troglodytes BAC clone CH251-576K13 from Y, complete sequence Length = 177726 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 aactcaacaggaagaacttc 350 |||||||||||||||||||| Sbjct: 15680 aactcaacaggaagaacttc 15661
>emb|CR759807.8| Zebrafish DNA sequence from clone CH211-176L1, complete sequence Length = 169839 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 atttgtttatttctttttat 67 |||||||||||||||||||| Sbjct: 111840 atttgtttatttctttttat 111821
>emb|AL691452.10| Human DNA sequence from clone RP11-78B10 on chromosome 1 Contains the 3' end of the CR2 gene for complement component (3d/Epstein Barr virus) receptor 2, the CR1 gene for complement component (3b/4b) receptor 1, including Knops blood group system, a membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen) (MCP) pseudogene, a novel gene and the 5' end of the CR1L gene for complement component (3b/4b) receptor 1-like, complete sequence Length = 108290 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 45 tacatttgtttatttctttttata 68 ||||||||| |||||||||||||| Sbjct: 38946 tacatttgtctatttctttttata 38923
>emb|AL513128.11| Human DNA sequence from clone RP11-301N24 on chromosome 10 Contains the 3' end of the SPAG6 gene for sperm associated antigen 6 (pf16, MGC26276, Repro-SA-1,DKFZp434I153), the 3' end of a novel gene, the 3' end of the PIP5K2A gene for phosphatidylinositol-4-phosphate 5-kinase type II alpha and two CpG islands, complete sequence Length = 184685 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 ttacatttgtttatttcttt 63 |||||||||||||||||||| Sbjct: 1664 ttacatttgtttatttcttt 1683
>emb|AL365220.24| Human DNA sequence from clone RP4-735N21 on chromosome 1p21.2-22.2 Contains a novel pseudogene, complete sequence Length = 113028 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 atttgtttatttctttttat 67 |||||||||||||||||||| Sbjct: 78736 atttgtttatttctttttat 78717
>emb|AL158211.29| Human DNA sequence from clone RP11-573G6 on chromosome 10 Contains a ribosomal protein L31 (RPL31) pseudogene, the BUP gene for BUP protein, the BMI1 gene for B lymphoma Mo-MLV insertion region (mouse) (MGC12685), the 5' end of the SPAG6 gene for sperm associated antigen 6 (pf16, MGC26276, Repro-SA-1,DKFZp434I153), the 5' end of a novel gene and seven CpG islands, complete sequence Length = 138094 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 ttacatttgtttatttcttt 63 |||||||||||||||||||| Sbjct: 137758 ttacatttgtttatttcttt 137777
>emb|AJ307671.1|BAC221D7 Mus musculus BAC22107 partial stk33 gene Length = 158201 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 aactcaacaggaagaacttc 350 |||||||||||||||||||| Sbjct: 142085 aactcaacaggaagaacttc 142066
>emb|AJ296304.1|MMU296304 Mus musculus lmo1 gene for putative human LMO1 homologue, exons 1-4 Length = 185655 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 aactcaacaggaagaacttc 350 |||||||||||||||||||| Sbjct: 13270 aactcaacaggaagaacttc 13251
>gb|AF481923.1| Dictyostelium discoideum cyclic GMP-binding protein C (gbpC) gene, complete cds Length = 8125 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 gttacatttgtttatttcttttta 66 ||||||||||||| |||||||||| Sbjct: 1192 gttacatttgtttttttcttttta 1169
>gb|AC109782.7| Homo sapiens 3 BAC RP11-346M10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163591 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 gcttgatgttttgatgtcatcttt 275 |||| ||||||||||||||||||| Sbjct: 119709 gctttatgttttgatgtcatcttt 119732
>dbj|BS000576.2| Pan troglodytes chromosome Y clone:PTB-045N05, complete sequences Length = 190089 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 aactcaacaggaagaacttc 350 |||||||||||||||||||| Sbjct: 20765 aactcaacaggaagaacttc 20746
>dbj|BS000553.1| Pan troglodytes chromosome Y clone:PTB-310C12, complete sequences Length = 120948 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 aactcaacaggaagaacttc 350 |||||||||||||||||||| Sbjct: 97606 aactcaacaggaagaacttc 97587
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 aactcaacaggaagaacttc 350 |||||||||||||||||||| Sbjct: 23497512 aactcaacaggaagaacttc 23497531
>gb|AC006920.11| Arabidopsis thaliana chromosome 2 clone F26H6 map mi398, complete sequence Length = 89301 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 ttacatttgtttatttctttttat 67 |||||||||||||||| ||||||| Sbjct: 67149 ttacatttgtttatttatttttat 67172
>gb|AC011291.8| Homo sapiens BAC clone RP11-67G7 from 2, complete sequence Length = 150214 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 gtcaatcagtactttgagaa 451 |||||||||||||||||||| Sbjct: 143798 gtcaatcagtactttgagaa 143779
>emb|AL953914.11| Zebrafish DNA sequence from clone CH211-235I18 in linkage group 8, complete sequence Length = 151737 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 caatgtggctgtacattgtc 375 |||||||||||||||||||| Sbjct: 51256 caatgtggctgtacattgtc 51275
>gb|AC006551.6|AC006551 Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete sequence Length = 107200 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 ttacatttgtttatttctttttat 67 |||||||||||||||| ||||||| Sbjct: 48502 ttacatttgtttatttatttttat 48525
>emb|BX119979.9| Zebrafish DNA sequence from clone CH211-201G8 in linkage group 1, complete sequence Length = 194023 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 gtacacaaagttcagtttct 418 |||||||||||||||||||| Sbjct: 84843 gtacacaaagttcagtttct 84862
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 ccccaaaagcttgatgtttt 263 |||||||||||||||||||| Sbjct: 10100009 ccccaaaagcttgatgtttt 10100028
>gb|AC079402.5| Homo sapiens BAC clone RP11-597E15 from 2, complete sequence Length = 86973 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 aaaagaagcctcaaatactt 475 |||||||||||||||||||| Sbjct: 72970 aaaagaagcctcaaatactt 72989
>gb|AY913763.1| Pan troglodytes ZFY (ZFY) gene, complete cds Length = 167166 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 aactcaacaggaagaacttc 350 |||||||||||||||||||| Sbjct: 148062 aactcaacaggaagaacttc 148043
>gb|AC013412.3|AC013412 Homo sapiens BAC clone RP11-507A3 from Y, complete sequence Length = 200214 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 aactcaacaggaagaacttc 350 |||||||||||||||||||| Sbjct: 102228 aactcaacaggaagaacttc 102209
>gb|AC023279.2|AC023279 Genomic sequence for Arabidopsis thaliana BAC F12K21 from chromosome I, complete sequence Length = 117585 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 tagttacatttgtttatttc 60 |||||||||||||||||||| Sbjct: 14788 tagttacatttgtttatttc 14769
>dbj|AP004791.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0491D10 Length = 162039 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 ccccaaaagcttgatgtttt 263 |||||||||||||||||||| Sbjct: 66375 ccccaaaagcttgatgtttt 66394
>dbj|AB025633.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQM1 Length = 81365 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tgtttatttctttttataca 70 |||||||||||||||||||| Sbjct: 55691 tgtttatttctttttataca 55672
>gb|AC005993.2|AC005993 Homo sapiens PAC clone RP6-114E22 from 14, complete sequence Length = 143943 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 tagttacatttgtttatttctttt 64 ||||||||||||||||||| |||| Sbjct: 80096 tagttacatttgtttatttttttt 80073
>emb|AL391749.4|CNS06C8I Human chromosome 14 DNA sequence BAC R-233L14 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 195007 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 tagttacatttgtttatttctttt 64 ||||||||||||||||||| |||| Sbjct: 45239 tagttacatttgtttatttttttt 45216
>emb|BX510919.4| Zebrafish DNA sequence from clone DKEY-164K19 in linkage group 20, complete sequence Length = 243899 Score = 40.1 bits (20), Expect = 7.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 11 atacagcaaattcacaagcaaggtattttgtagtta 46 |||||||||| ||||||||| | |||||||||||| Sbjct: 175189 atacagcaaactcacaagcagtgaattttgtagtta 175224
>gb|AC007894.2|F21H2 Arabidopsis thaliana chromosome 1 BAC F21H2 sequence, complete sequence Length = 88512 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 tagttacatttgtttatttc 60 |||||||||||||||||||| Sbjct: 79063 tagttacatttgtttatttc 79044
>emb|CR790380.7| Zebrafish DNA sequence from clone DKEY-238N5 in linkage group 6, complete sequence Length = 170914 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 catttgtttatttcttttta 66 |||||||||||||||||||| Sbjct: 127221 catttgtttatttcttttta 127202
>emb|BX511083.17| Zebrafish DNA sequence from clone CH211-195F22 in linkage group 1, complete sequence Length = 211668 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 gtacacaaagttcagtttct 418 |||||||||||||||||||| Sbjct: 104221 gtacacaaagttcagtttct 104240
>emb|AL732539.6| Mouse DNA sequence from clone RP23-255E6 on chromosome 11 Contains the 3' end of the Msi2h gene for Musashi homolog 2 (Drosophila), an eukaryotic translation elongation factor 2 (Eef2) pseudogene and a ribosomal protein L35a (Rpl35a) pseudogene, complete sequence Length = 216688 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ttacatttgtttatttcttt 63 |||||||||||||||||||| Sbjct: 103066 ttacatttgtttatttcttt 103047
>gb|AC134867.3| Mus musculus BAC clone RP23-18L24 from 10, complete sequence Length = 200631 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 tttgtttatttctttttatacagc 72 |||||||||||| ||||||||||| Sbjct: 11917 tttgtttatttcattttatacagc 11894
>gb|AC147221.4| Mus musculus BAC clone RP23-58K20 from 7, complete sequence Length = 223807 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 aactcaacaggaagaacttc 350 |||||||||||||||||||| Sbjct: 29093 aactcaacaggaagaacttc 29074
>emb|AL772223.7| Mouse DNA sequence from clone RP23-372J10 on chromosome 4, complete sequence Length = 211954 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 tcagtactttgagaacctta 456 |||||||||||||||||||| Sbjct: 175838 tcagtactttgagaacctta 175857
>emb|AL845500.6| Mouse DNA sequence from clone RP23-221K3 on chromosome 2, complete sequence Length = 204459 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 agttacatttgtttatttct 61 |||||||||||||||||||| Sbjct: 18514 agttacatttgtttatttct 18533 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,972,059 Number of Sequences: 3902068 Number of extensions: 5972059 Number of successful extensions: 138154 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 137682 Number of HSP's gapped (non-prelim): 472 length of query: 563 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 540 effective length of database: 17,143,297,704 effective search space: 9257380760160 effective search space used: 9257380760160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)