ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1j04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TS1R2_RAT (Q9Z0R7) Taste receptor type 1 member 2 precursor (G-p... 33 0.76
2RSC3_YEAST (Q06639) Chromatin structure remodeling complex prote... 31 2.9
3TX26_PHONI (P29425) Neurotoxin Tx2-6 precursor 30 4.9

>TS1R2_RAT (Q9Z0R7) Taste receptor type 1 member 2 precursor (G-protein|
           coupled receptor 71) (Sweet taste receptor T1R2)
          Length = 843

 Score = 33.1 bits (74), Expect = 0.76
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = -2

Query: 662 PIQSGCCKPPTSCAFTY-NNETYWSANPGVPTVVTDPDC----LKWSNDQQTLCFQCDSC 498
           P QS     PTS   TY NN ++++ N  VP  +    C    +K S      CF+C  C
Sbjct: 465 PFQSIASYSPTSKRLTYINNVSWYTPNNTVPVSMCSKSCQPGQMKKSVGLHPCCFECLDC 524

Query: 497 KAG 489
             G
Sbjct: 525 MPG 527



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>RSC3_YEAST (Q06639) Chromatin structure remodeling complex protein RSC3|
           (Remodel the structure of chromatin complex subunit 3)
          Length = 885

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +2

Query: 41  LQXLILYHQIQNRPTL-NTTEPKHHTKHFDPRTPSLSHNPATG*SXXXXXXNTVQQEI*F 217
           LQ L   +Q+ NR +  N T  + HT++     PSL   P T  +      N VQ    F
Sbjct: 106 LQLLNAQNQLNNRSSAANATLNQQHTQYIPKSVPSLESKPVTSANESSTPLNWVQGPAIF 165

Query: 218 RPKVLTPPPTTSGLL 262
              +LT P T   ++
Sbjct: 166 H--MLTSPYTQDEII 178



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>TX26_PHONI (P29425) Neurotoxin Tx2-6 precursor|
          Length = 82

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 171 DHPVAGLCEREGVLGSKCLVWCLGSVVFRVGLFCIWWYKMRXCKE 37
           D P    C+  G  G +C+  C G  + R G F I WYK+  CK+
Sbjct: 41  DQPCKETCDCCGERG-ECV--CGGPCICRQGYFWIAWYKLANCKK 82


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,643,113
Number of Sequences: 219361
Number of extensions: 1575601
Number of successful extensions: 4440
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4437
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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