ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags29b23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PUB14_ARATH (Q8VZ40) E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Pro... 56 9e-08
2SPL11_ORYSA (Q64HA9) Spotted leaf protein 11 (Spotted leaf11) (C... 52 2e-06
3GLT1_SCHPO (Q9C102) Putative glutamate synthase [NADPH] (EC 1.4.... 29 9.2

>PUB14_ARATH (Q8VZ40) E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical U-box|
           domain protein 14)
          Length = 632

 Score = 55.8 bits (133), Expect = 9e-08
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
 Frame = -3

Query: 424 VPSFFLCPILKETMDDPQVAADGVTYEGRAIREWIEDGRAV---ADLKLRHLGLTPNHAL 254
           +P +F CPI  E M DP + + G TYE  +I++W++ G      +   L H GLTPN+ L
Sbjct: 248 IPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 307

Query: 253 RFAIQDW 233
           +  I  W
Sbjct: 308 KSLIALW 314



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>SPL11_ORYSA (Q64HA9) Spotted leaf protein 11 (Spotted leaf11) (Cell|
           death-related protein SPL11)
          Length = 694

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -3

Query: 424 VPSFFLCPILKETMDDPQVAADGVTYEGRAIREWIEDGR---AVADLKLRHLGLTPNHAL 254
           +P  F CPI  E M DP + + G TYE   I +WI  G         K+    LTPN+ L
Sbjct: 273 IPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVL 332

Query: 253 RFAIQDW 233
           R  I  W
Sbjct: 333 RSLISQW 339



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>GLT1_SCHPO (Q9C102) Putative glutamate synthase [NADPH] (EC 1.4.1.13)|
           (NADPH-GOGAT)
          Length = 2111

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -3

Query: 385 MDDPQVAADGVTYEGRAIREWIEDGRAVADLKLRHLGLTPNHALRFAIQDWLSQ 224
           ++  ++   G  Y GR +    ++GR V D +L+H     N A R+  + WL Q
Sbjct: 447 IEPDRIVQKGRLYPGRMLLVDTKEGRIVDDKELKH-----NIASRYDFRSWLDQ 495


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,728,072
Number of Sequences: 219361
Number of extensions: 1224597
Number of successful extensions: 3230
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3226
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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