ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28m21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF262984.1|AF262984 Triticum aestivum cyclophilin A-3 (CyP3) ... 161 8e-37
2gb|AY456124.1| Triticum aestivum cyclophilin A (CYP18-3) gene, p... 161 8e-37
3gb|AF262983.1|AF262983 Triticum aestivum cyclophilin A-2 (CyP2) ... 147 1e-32
4gb|AY456122.1| Triticum aestivum cyclophilin A (CYP18-2) gene, c... 147 1e-32
5gb|AF262982.1|AF262982 Triticum aestivum cyclophilin A-1 (CyP1) ... 143 2e-31
6gb|AY456123.1| Triticum aestivum cyclophilin A (CYP18-1) gene, p... 143 2e-31
7emb|BX015829.1|CNS08KDL Single read from an extremity of a full-... 38 7.9
8ref|XM_311308.2| Anopheles gambiae str. PEST ENSANGP00000017680 ... 38 7.9

>gb|AF262984.1|AF262984 Triticum aestivum cyclophilin A-3 (CyP3) mRNA, complete cds
          Length = 869

 Score =  161 bits (81), Expect = 8e-37
 Identities = 123/135 (91%), Gaps = 3/135 (2%)
 Strand = Plus / Minus

                                                                       
Query: 33  gccggacgcagatccagcagcctaaagagtcnacctaaaaccctcctaaaccaaccacgg 92
           |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 763 gccggacgcagatccagcggcccaaagagtccacctaaaaccctcctaaaccaaccacgg 704

                                                                       
Query: 93  agatcttatcggacggacaggggcaagacacg--acacgact-tcttatttagaccgacg 149
           |||||| |||||||||||  ||| ||||||||  |||||||| ||||||||||| |||||
Sbjct: 703 agatctcatcggacggaccaggggaagacacgacacacgactctcttatttagatcgacg 644

                          
Query: 150 acacgacaggggaca 164
           |||||||| ||||||
Sbjct: 643 acacgacacgggaca 629



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>gb|AY456124.1| Triticum aestivum cyclophilin A (CYP18-3) gene, partial cds
          Length = 494

 Score =  161 bits (81), Expect = 8e-37
 Identities = 123/135 (91%), Gaps = 3/135 (2%)
 Strand = Plus / Minus

                                                                       
Query: 33  gccggacgcagatccagcagcctaaagagtcnacctaaaaccctcctaaaccaaccacgg 92
           |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 484 gccggacgcagatccagcggcccaaagagtccacctaaaaccctcctaaaccaaccacgg 425

                                                                       
Query: 93  agatcttatcggacggacaggggcaagacacg--acacgact-tcttatttagaccgacg 149
           |||||| |||||||||||  ||| ||||||||  |||||||| ||||||||||| |||||
Sbjct: 424 agatctcatcggacggaccaggggaagacacgacacacgactctcttatttagatcgacg 365

                          
Query: 150 acacgacaggggaca 164
           |||||||| ||||||
Sbjct: 364 acacgacacgggaca 350



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>gb|AF262983.1|AF262983 Triticum aestivum cyclophilin A-2 (CyP2) mRNA, complete cds
          Length = 845

 Score =  147 bits (74), Expect = 1e-32
 Identities = 106/116 (91%), Gaps = 1/116 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  ggaagataacn-tggcggccggacgcagatccagcagcctaaagagtcnacctaaaaccc 75
           ||||||||||  |||| ||||||| |||||||||| ||| |||||||| |||||||||||
Sbjct: 776 ggaagataaccatggccgccggacacagatccagcggccaaaagagtccacctaaaaccc 717

                                                                   
Query: 76  tcctaaaccaaccacggagatcttatcggacggacaggggcaagacacgacacgac 131
           ||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||
Sbjct: 716 tcctaaaccaaccacggagatctcatcggacggacaaggggaagacacgacacgac 661



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>gb|AY456122.1| Triticum aestivum cyclophilin A (CYP18-2) gene, complete cds
          Length = 781

 Score =  147 bits (74), Expect = 1e-32
 Identities = 106/116 (91%), Gaps = 1/116 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  ggaagataacn-tggcggccggacgcagatccagcagcctaaagagtcnacctaaaaccc 75
           ||||||||||  |||| ||||||| |||||||||| ||| |||||||| |||||||||||
Sbjct: 740 ggaagataaccatggccgccggacacagatccagcggccaaaagagtccacctaaaaccc 681

                                                                   
Query: 76  tcctaaaccaaccacggagatcttatcggacggacaggggcaagacacgacacgac 131
           ||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||
Sbjct: 680 tcctaaaccaaccacggagatctcatcggacggacaaggggaagacacgacacgac 625



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>gb|AF262982.1|AF262982 Triticum aestivum cyclophilin A-1 (CyP1) mRNA, complete cds
          Length = 859

 Score =  143 bits (72), Expect = 2e-31
 Identities = 125/144 (86%), Gaps = 8/144 (5%)
 Strand = Plus / Minus

                                                                       
Query: 29  ggcggccggacgcagatccagcagcctaaagagtcnacctaaaaccctcctaaaccaacc 88
           |||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 771 ggcggccggacagagatccagcagcccaaagagtccacctaaaaccctcctaaaccaacc 712

                                                                       
Query: 89  acggagatcttatcggacggacaggggcaagacacgacacgact--------tcttattt 140
           |||||||||| |||||||||||  ||| |||||||||||||||         ||||||||
Sbjct: 711 acggagatctcatcggacggaccaggggaagacacgacacgacacacgactctcttattt 652

                                   
Query: 141 agaccgacgacacgacaggggaca 164
           ||| ||||||||||||| ||||||
Sbjct: 651 agatcgacgacacgacacgggaca 628



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>gb|AY456123.1| Triticum aestivum cyclophilin A (CYP18-1) gene, partial cds
          Length = 519

 Score =  143 bits (72), Expect = 2e-31
 Identities = 125/144 (86%), Gaps = 8/144 (5%)
 Strand = Plus / Minus

                                                                       
Query: 29  ggcggccggacgcagatccagcagcctaaagagtcnacctaaaaccctcctaaaccaacc 88
           |||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 501 ggcggccggacagagatccagcagcccaaagagtccacctaaaaccctcctaaaccaacc 442

                                                                       
Query: 89  acggagatcttatcggacggacaggggcaagacacgacacgact--------tcttattt 140
           |||||||||| |||||||||||  ||| |||||||||||||||         ||||||||
Sbjct: 441 acggagatctcatcggacggaccaggggaagacacgacacgacacacgactctcttattt 382

                                   
Query: 141 agaccgacgacacgacaggggaca 164
           ||| ||||||||||||| ||||||
Sbjct: 381 agatcgacgacacgacacgggaca 358



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>emb|BX015829.1|CNS08KDL Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA23DA10 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 827

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 112 ggggcaagacacgacacga 130
           |||||||||||||||||||
Sbjct: 355 ggggcaagacacgacacga 337



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>ref|XM_311308.2| Anopheles gambiae str. PEST ENSANGP00000017680
           (ENSANGG00000015191), partial mRNA
          Length = 860

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 112 ggggcaagacacgacacga 130
           |||||||||||||||||||
Sbjct: 390 ggggcaagacacgacacga 372


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 679,859
Number of Sequences: 3902068
Number of extensions: 679859
Number of successful extensions: 41308
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41294
Number of HSP's gapped (non-prelim): 12
length of query: 164
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 142
effective length of database: 17,147,199,772
effective search space: 2434902367624
effective search space used: 2434902367624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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