| Clone Name | rbags28m21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF262984.1|AF262984 Triticum aestivum cyclophilin A-3 (CyP3) mRNA, complete cds Length = 869 Score = 161 bits (81), Expect = 8e-37 Identities = 123/135 (91%), Gaps = 3/135 (2%) Strand = Plus / Minus Query: 33 gccggacgcagatccagcagcctaaagagtcnacctaaaaccctcctaaaccaaccacgg 92 |||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||| Sbjct: 763 gccggacgcagatccagcggcccaaagagtccacctaaaaccctcctaaaccaaccacgg 704 Query: 93 agatcttatcggacggacaggggcaagacacg--acacgact-tcttatttagaccgacg 149 |||||| ||||||||||| ||| |||||||| |||||||| ||||||||||| ||||| Sbjct: 703 agatctcatcggacggaccaggggaagacacgacacacgactctcttatttagatcgacg 644 Query: 150 acacgacaggggaca 164 |||||||| |||||| Sbjct: 643 acacgacacgggaca 629
>gb|AY456124.1| Triticum aestivum cyclophilin A (CYP18-3) gene, partial cds Length = 494 Score = 161 bits (81), Expect = 8e-37 Identities = 123/135 (91%), Gaps = 3/135 (2%) Strand = Plus / Minus Query: 33 gccggacgcagatccagcagcctaaagagtcnacctaaaaccctcctaaaccaaccacgg 92 |||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||| Sbjct: 484 gccggacgcagatccagcggcccaaagagtccacctaaaaccctcctaaaccaaccacgg 425 Query: 93 agatcttatcggacggacaggggcaagacacg--acacgact-tcttatttagaccgacg 149 |||||| ||||||||||| ||| |||||||| |||||||| ||||||||||| ||||| Sbjct: 424 agatctcatcggacggaccaggggaagacacgacacacgactctcttatttagatcgacg 365 Query: 150 acacgacaggggaca 164 |||||||| |||||| Sbjct: 364 acacgacacgggaca 350
>gb|AF262983.1|AF262983 Triticum aestivum cyclophilin A-2 (CyP2) mRNA, complete cds Length = 845 Score = 147 bits (74), Expect = 1e-32 Identities = 106/116 (91%), Gaps = 1/116 (0%) Strand = Plus / Minus Query: 17 ggaagataacn-tggcggccggacgcagatccagcagcctaaagagtcnacctaaaaccc 75 |||||||||| |||| ||||||| |||||||||| ||| |||||||| ||||||||||| Sbjct: 776 ggaagataaccatggccgccggacacagatccagcggccaaaagagtccacctaaaaccc 717 Query: 76 tcctaaaccaaccacggagatcttatcggacggacaggggcaagacacgacacgac 131 ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| Sbjct: 716 tcctaaaccaaccacggagatctcatcggacggacaaggggaagacacgacacgac 661
>gb|AY456122.1| Triticum aestivum cyclophilin A (CYP18-2) gene, complete cds Length = 781 Score = 147 bits (74), Expect = 1e-32 Identities = 106/116 (91%), Gaps = 1/116 (0%) Strand = Plus / Minus Query: 17 ggaagataacn-tggcggccggacgcagatccagcagcctaaagagtcnacctaaaaccc 75 |||||||||| |||| ||||||| |||||||||| ||| |||||||| ||||||||||| Sbjct: 740 ggaagataaccatggccgccggacacagatccagcggccaaaagagtccacctaaaaccc 681 Query: 76 tcctaaaccaaccacggagatcttatcggacggacaggggcaagacacgacacgac 131 ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| Sbjct: 680 tcctaaaccaaccacggagatctcatcggacggacaaggggaagacacgacacgac 625
>gb|AF262982.1|AF262982 Triticum aestivum cyclophilin A-1 (CyP1) mRNA, complete cds Length = 859 Score = 143 bits (72), Expect = 2e-31 Identities = 125/144 (86%), Gaps = 8/144 (5%) Strand = Plus / Minus Query: 29 ggcggccggacgcagatccagcagcctaaagagtcnacctaaaaccctcctaaaccaacc 88 ||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 771 ggcggccggacagagatccagcagcccaaagagtccacctaaaaccctcctaaaccaacc 712 Query: 89 acggagatcttatcggacggacaggggcaagacacgacacgact--------tcttattt 140 |||||||||| ||||||||||| ||| ||||||||||||||| |||||||| Sbjct: 711 acggagatctcatcggacggaccaggggaagacacgacacgacacacgactctcttattt 652 Query: 141 agaccgacgacacgacaggggaca 164 ||| ||||||||||||| |||||| Sbjct: 651 agatcgacgacacgacacgggaca 628
>gb|AY456123.1| Triticum aestivum cyclophilin A (CYP18-1) gene, partial cds Length = 519 Score = 143 bits (72), Expect = 2e-31 Identities = 125/144 (86%), Gaps = 8/144 (5%) Strand = Plus / Minus Query: 29 ggcggccggacgcagatccagcagcctaaagagtcnacctaaaaccctcctaaaccaacc 88 ||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 501 ggcggccggacagagatccagcagcccaaagagtccacctaaaaccctcctaaaccaacc 442 Query: 89 acggagatcttatcggacggacaggggcaagacacgacacgact--------tcttattt 140 |||||||||| ||||||||||| ||| ||||||||||||||| |||||||| Sbjct: 441 acggagatctcatcggacggaccaggggaagacacgacacgacacacgactctcttattt 382 Query: 141 agaccgacgacacgacaggggaca 164 ||| ||||||||||||| |||||| Sbjct: 381 agatcgacgacacgacacgggaca 358
>emb|BX015829.1|CNS08KDL Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA23DA10 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 827 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 112 ggggcaagacacgacacga 130 ||||||||||||||||||| Sbjct: 355 ggggcaagacacgacacga 337
>ref|XM_311308.2| Anopheles gambiae str. PEST ENSANGP00000017680 (ENSANGG00000015191), partial mRNA Length = 860 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 112 ggggcaagacacgacacga 130 ||||||||||||||||||| Sbjct: 390 ggggcaagacacgacacga 372 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 679,859 Number of Sequences: 3902068 Number of extensions: 679859 Number of successful extensions: 41308 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41294 Number of HSP's gapped (non-prelim): 12 length of query: 164 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 142 effective length of database: 17,147,199,772 effective search space: 2434902367624 effective search space used: 2434902367624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)