ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags29b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_184531.2| Oryza sativa (japonica cultivar-group), mRNA 52 8e-04
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 8e-04
3dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic D... 52 8e-04
4dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic D... 52 8e-04
5dbj|AK072705.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 8e-04
6dbj|AK060540.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 8e-04
7dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic D... 52 8e-04
8gb|AC074290.5| Homo sapiens BAC clone RP11-305O20 from 2, comple... 42 0.76
9gb|AE008717.1| Salmonella typhimurium LT2, section 25 of 220 of ... 40 3.0
10emb|AL627266.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 3.0
11gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 40 3.0
12gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 3.0
13gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 40 3.0
14gb|U12980.3|SCU12980 Saccharomyces cerevisiae chromosome I left ... 40 3.0 
>ref|NM_184531.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1829

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 93   ctccttcctcgctccacgacgtgctccaggtctgcgaaccagagtttcagcagcgatttc 152
            |||||||||||||||||||| ||||| ||||| || |||||   ||| |||| |||||||
Sbjct: 1583 ctccttcctcgctccacgacttgctctaggtcagcaaaccatgatttaagcaacgatttc 1524

              
Query: 153  tc 154
            ||
Sbjct: 1523 tc 1522
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                           
Query: 93      ctccttcctcgctccacgacgtgctccaggtctgcgaaccagagtttcagcagcgatttc 152
               |||||||||||||||||||| ||||| ||||| || |||||   ||| |||| |||||||
Sbjct: 3473112 ctccttcctcgctccacgacttgctctaggtcagcaaaccatgatttaagcaacgatttc 3473171

                 
Query: 153     tc 154
               ||
Sbjct: 3473172 tc 3473173
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>dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0701D05
          Length = 172161

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                          
Query: 93     ctccttcctcgctccacgacgtgctccaggtctgcgaaccagagtttcagcagcgatttc 152
              |||||||||||||||||||| ||||| ||||| || |||||   ||| |||| |||||||
Sbjct: 151482 ctccttcctcgctccacgacttgctctaggtcagcaaaccatgatttaagcaacgatttc 151541

                
Query: 153    tc 154
              ||
Sbjct: 151542 tc 151543
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>dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1276_B06
          Length = 175174

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                         
Query: 93    ctccttcctcgctccacgacgtgctccaggtctgcgaaccagagtttcagcagcgatttc 152
             |||||||||||||||||||| ||||| ||||| || |||||   ||| |||| |||||||
Sbjct: 41180 ctccttcctcgctccacgacttgctctaggtcagcaaaccatgatttaagcaacgatttc 41239

               
Query: 153   tc 154
             ||
Sbjct: 41240 tc 41241
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>dbj|AK072705.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135A18, full
            insert sequence
          Length = 1853

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 93   ctccttcctcgctccacgacgtgctccaggtctgcgaaccagagtttcagcagcgatttc 152
            |||||||||||||||||||| ||||| ||||| || |||||   ||| |||| |||||||
Sbjct: 1587 ctccttcctcgctccacgacttgctctaggtcagcaaaccatgatttaagcaacgatttc 1528

              
Query: 153  tc 154
            ||
Sbjct: 1527 tc 1526
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>dbj|AK060540.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-E04, full
            insert sequence
          Length = 1829

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 93   ctccttcctcgctccacgacgtgctccaggtctgcgaaccagagtttcagcagcgatttc 152
            |||||||||||||||||||| ||||| ||||| || |||||   ||| |||| |||||||
Sbjct: 1583 ctccttcctcgctccacgacttgctctaggtcagcaaaccatgatttaagcaacgatttc 1524

              
Query: 153  tc 154
            ||
Sbjct: 1523 tc 1522
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>dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0028E10
          Length = 140791

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                         
Query: 93    ctccttcctcgctccacgacgtgctccaggtctgcgaaccagagtttcagcagcgatttc 152
             |||||||||||||||||||| ||||| ||||| || |||||   ||| |||| |||||||
Sbjct: 59872 ctccttcctcgctccacgacttgctctaggtcagcaaaccatgatttaagcaacgatttc 59931

               
Query: 153   tc 154
             ||
Sbjct: 59932 tc 59933
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>gb|AC074290.5| Homo sapiens BAC clone RP11-305O20 from 2, complete sequence
          Length = 172706

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 35     aagttctagctactgaatttt 55
              |||||||||||||||||||||
Sbjct: 110246 aagttctagctactgaatttt 110226
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>gb|AE008717.1| Salmonella typhimurium LT2, section 25 of 220 of the complete
           genome
          Length = 20347

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 198 tgctgcatcgtcaggatctc 217
           ||||||||||||||||||||
Sbjct: 311 tgctgcatcgtcaggatctc 330
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>emb|AL627266.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 2/20
          Length = 268050

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    tgctgcatcgtcaggatctc 217
              ||||||||||||||||||||
Sbjct: 255609 tgctgcatcgtcaggatctc 255628
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 198     tgctgcatcgtcaggatctc 217
               ||||||||||||||||||||
Sbjct: 2358647 tgctgcatcgtcaggatctc 2358628
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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 198     tgctgcatcgtcaggatctc 217
               ||||||||||||||||||||
Sbjct: 2474492 tgctgcatcgtcaggatctc 2474473
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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
              complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    tgctgcatcgtcaggatctc 217
              ||||||||||||||||||||
Sbjct: 558819 tgctgcatcgtcaggatctc 558838
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>gb|U12980.3|SCU12980 Saccharomyces cerevisiae chromosome I left arm sequence
          Length = 103681

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   gcgaaccagagtttcagcag 145
             ||||||||||||||||||||
Sbjct: 28984 gcgaaccagagtttcagcag 29003


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,394,039
Number of Sequences: 3902068
Number of extensions: 1394039
Number of successful extensions: 23844
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23800
Number of HSP's gapped (non-prelim): 44
length of query: 235
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 213
effective length of database: 17,147,199,772
effective search space: 3652353551436
effective search space used: 3652353551436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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