Clone Information

BLAST Search Result

Clone Name	rbags29b09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_195260.1\| Oryza sativa (japonica cultivar-group) unknown ...	305	1e-79
2	dbj\|AK070874.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	305	1e-79
3	ref\|XM_479647.1\| Oryza sativa (japonica cultivar-group), mRNA	274	4e-70
4	gb\|AY110989.1\| Zea mays CL5869_1 mRNA sequence	159	1e-35
5	gb\|AC104616.5\| Oryza sativa (japonica cultivar-group) chromosome...	135	2e-28
6	gb\|AC105932.6\| Oryza sativa (japonica cultivar-group) chromosome...	135	2e-28
7	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	135	2e-28
8	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	135	2e-28
9	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	123	8e-25
10	dbj\|AP005406.3\| Oryza sativa (japonica cultivar-group) genomic D...	123	8e-25
11	gb\|AC166096.2\| Mus musculus BAC clone RP24-467F14 from chromosom...	42	2.4
12	gb\|AC104471.6\| Homo sapiens 3 BAC RP11-80B17 (Roswell Park Cance...	42	2.4
13	gb\|AC112932.19\| Mus musculus chromosome 3, clone RP24-512D23, co...	42	2.4
14	gb\|AC133291.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.5
15	gb\|AC125406.4\| Mus musculus BAC clone RP23-32C18 from chromosome...	40	9.5
16	gb\|AC145881.4\| Pan troglodytes BAC clone RP43-7E18 from chromoso...	40	9.5
17	ref\|XM_759599.1\| Theileria parva strain Muguga RNA helicase-1 (T...	40	9.5
18	ref\|XM_949204.1\| Theileria annulata strain Ankara hypothetical p...	40	9.5
19	gb\|AC109166.10\| Mus musculus chromosome 7, clone RP23-310P1, com...	40	9.5
20	emb\|AL591344.1\| Human DNA sequence from clone RP11-260H5 on chro...	40	9.5
21	gb\|CP000319.1\| Nitrobacter hamburgensis X14, complete genome	40	9.5
22	gb\|AY169401.1\| Squalus acanthias melanocortin 4 receptor (MC4) g...	40	9.5
23	emb\|AL133399.1\| Human DNA sequence from clone RP1-305G21 on chro...	40	9.5
24	emb\|BX914220.7\| Zebrafish DNA sequence from clone DKEYP-101F3 in...	40	9.5
25	emb\|AL662930.29\| Mouse DNA sequence from clone RP23-212B18 on ch...	40	9.5
26	gb\|AC027449.6\| Homo sapiens chromosome 18, clone RP11-535A5, com...	40	9.5
27	gb\|AC009510.9\| Homo sapiens 12p11-37.2-54.4 BAC RP11-1110J8 (Ros...	40	9.5
28	gb\|AC092042.2\| Homo sapiens chromosome 3 clone RP11-136C24, comp...	40	9.5
29	gb\|AC109644.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.5
30	gb\|AC144559.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.5
31	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.5
32	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.5
33	gb\|AC104801.4\| Homo sapiens BAC clone RP11-356J12 from 2, comple...	40	9.5
34	dbj\|AP005568.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.5
35	dbj\|AP005420.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.5
36	dbj\|AB167808.1\| Achaearanea tepidariorum wg mRNA for Wingless, p...	40	9.5
37	dbj\|AK065753.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	9.5
38	gb\|AY109346.1\| Zea mays CL5575_3 mRNA sequence	40	9.5
39	gb\|AY108765.1\| Zea mays PCO088803 mRNA sequence	40	9.5
40	emb\|Z73898.1\|CEZK822 Caenorhabditis elegans Cosmid ZK822, comple...	40	9.5
41	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.5
42	emb\|AL732360.12\| Mouse DNA sequence from clone RP23-405B14 on ch...	40	9.5
43	gb\|AC129323.6\| Mus musculus BAC clone RP23-237M15 from 9, comple...	40	9.5
44	dbj\|AP004608.4\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	9.5
45	dbj\|AP003971.2\| Homo sapiens genomic DNA, chromosome 11q clone:R...	40	9.5

>ref|NM_195260.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0079H13.4), mRNA
          Length = 2042

 Score =  305 bits (154), Expect = 1e-79
 Identities = 247/278 (88%)
 Strand = Plus / Minus

                                                                        
Query: 411  atcacttccttgcagcgctccattgcgtccttcgttgtctctgattgttgcaagtagtca 470
            ||||||||||||||||||||||| || |||| |||||| |||||||||||||||||||||
Sbjct: 1592 atcacttccttgcagcgctccatggcatcctccgttgtttctgattgttgcaagtagtca 1533

                                                                        
Query: 471  caaatataggagccagctaaccaaggaatcaggattcttctagggaatgagaaactataa 530
            ||||||||||||||||| |||||||| ||||| |||||||||||||||| |||||| |||
Sbjct: 1532 caaatataggagccagccaaccaaggtatcagaattcttctagggaatgggaaactgtaa 1473

                                                                        
Query: 531  ggttctctcaactcatgaaaattaacttgggtaaccttctgagatggtgaattctccaca 590
            ||| |||||||||||||||||  |||||||||  ||||||||||  |||||||||||| |
Sbjct: 1472 ggtactctcaactcatgaaaaacaacttgggtggccttctgagacagtgaattctccaaa 1413

                                                                        
Query: 591  tcattagttgtagagtcatcatctgcctcatcaaggatgatatctaatctgcttcgtagg 650
            |  ||||| ||||||||||||||||||||||| || |||||||| ||||||||||  |||
Sbjct: 1412 ttgttagtagtagagtcatcatctgcctcatctagtatgatatccaatctgcttctcagg 1353

                                                  
Query: 651  ctcgcaatgatgtccaccttcagatcagatatagcttc 688
            || |  |||||||||| ||| |||||||||||| ||||
Sbjct: 1352 cttgtgatgatgtccaactttagatcagatataacttc 1315



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 310  aagctccaggcaccacatcccaaaatgattctag 343
            |||||||||| |||||||||||||| ||| ||||
Sbjct: 1690 aagctccaggtaccacatcccaaaacgatcctag 1657

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>dbj|AK070874.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074F23, full
            insert sequence
          Length = 1755

 Score =  305 bits (154), Expect = 1e-79
 Identities = 247/278 (88%)
 Strand = Plus / Minus

                                                                        
Query: 411  atcacttccttgcagcgctccattgcgtccttcgttgtctctgattgttgcaagtagtca 470
            ||||||||||||||||||||||| || |||| |||||| |||||||||||||||||||||
Sbjct: 1285 atcacttccttgcagcgctccatggcatcctccgttgtttctgattgttgcaagtagtca 1226

                                                                        
Query: 471  caaatataggagccagctaaccaaggaatcaggattcttctagggaatgagaaactataa 530
            ||||||||||||||||| |||||||| ||||| |||||||||||||||| |||||| |||
Sbjct: 1225 caaatataggagccagccaaccaaggtatcagaattcttctagggaatgggaaactgtaa 1166

                                                                        
Query: 531  ggttctctcaactcatgaaaattaacttgggtaaccttctgagatggtgaattctccaca 590
            ||| |||||||||||||||||  |||||||||  ||||||||||  |||||||||||| |
Sbjct: 1165 ggtactctcaactcatgaaaaacaacttgggtggccttctgagacagtgaattctccaaa 1106

                                                                        
Query: 591  tcattagttgtagagtcatcatctgcctcatcaaggatgatatctaatctgcttcgtagg 650
            |  ||||| ||||||||||||||||||||||| || |||||||| ||||||||||  |||
Sbjct: 1105 ttgttagtagtagagtcatcatctgcctcatctagtatgatatccaatctgcttctcagg 1046

                                                  
Query: 651  ctcgcaatgatgtccaccttcagatcagatatagcttc 688
            || |  |||||||||| ||| |||||||||||| ||||
Sbjct: 1045 cttgtgatgatgtccaactttagatcagatataacttc 1008



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 310  aagctccaggcaccacatcccaaaatgattctag 343
            |||||||||| |||||||||||||| ||| ||||
Sbjct: 1383 aagctccaggtaccacatcccaaaacgatcctag 1350

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>ref|XM_479647.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1266

 Score =  274 bits (138), Expect = 4e-70
 Identities = 243/278 (87%)
 Strand = Plus / Minus

                                                                        
Query: 411  atcacttccttgcagcgctccattgcgtccttcgttgtctctgattgttgcaagtagtca 470
            ||||||||||||||||||||||| || |||| | |||| |||||||||||||||||||||
Sbjct: 1001 atcacttccttgcagcgctccatggcatcctccattgtttctgattgttgcaagtagtca 942

                                                                        
Query: 471  caaatataggagccagctaaccaaggaatcaggattcttctagggaatgagaaactataa 530
            ||||||||||||||||| |||||||| ||||| ||||||||||||||||  ||||| |||
Sbjct: 941  caaatataggagccagccaaccaaggtatcagaattcttctagggaatggaaaactgtaa 882

                                                                        
Query: 531  ggttctctcaactcatgaaaattaacttgggtaaccttctgagatggtgaattctccaca 590
            ||| |||||||||||||||||  |||||| ||  ||||||||||  |||||||||||| |
Sbjct: 881  ggtgctctcaactcatgaaaaacaacttgagtggccttctgagacagtgaattctccaaa 822

                                                                        
Query: 591  tcattagttgtagagtcatcatctgcctcatcaaggatgatatctaatctgcttcgtagg 650
            |  ||||| ||||||||||||||||||||||| || ||||| || ||||||||||  |||
Sbjct: 821  ttgttagtagtagagtcatcatctgcctcatctagtatgatgtccaatctgcttctcagg 762

                                                  
Query: 651  ctcgcaatgatgtccaccttcagatcagatatagcttc 688
            || |  |||||||||| ||| |||||||||||| ||||
Sbjct: 761  cttgtgatgatgtccagctttagatcagatataacttc 724



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 310  aagctccaggcaccacatcccaaaatgattctagtgtcgca 350
            |||||||||| |||||||||||||| ||| |||| ||||||
Sbjct: 1099 aagctccagggaccacatcccaaaacgatcctagcgtcgca 1059

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>gb|AY110989.1| Zea mays CL5869_1 mRNA sequence
          Length = 917

 Score =  159 bits (80), Expect = 1e-35
 Identities = 234/286 (81%), Gaps = 2/286 (0%)
 Strand = Plus / Minus

                                                                       
Query: 410 tatcacttccttgcagcgctccattgcgtccttcgttgtctctgattgttgcaagtagtc 469
           ||||||||||||| |||| |||| ||| ||||  | |||||||| |||||||||||| ||
Sbjct: 427 tatcacttccttgaagcgatccactgcatcctctgctgtctctggttgttgcaagtaatc 368

                                                                       
Query: 470 acaaatataggagccagctaa-ccaaggaatcaggattcttctagggaatgagaaactat 528
           ||||| ||||| ||| ||| | |||||| |||||||  ||||| |||||||     || |
Sbjct: 367 acaaacataggtgcc-gctcagccaaggtatcaggacccttctcgggaatgnnnnnctgt 309

                                                                       
Query: 529 aaggttctctcaactcatgaaaattaacttgggtaaccttctgagatggtgaattctcca 588
           ||||||||||||||||||||||  ||||||| ||  |||||||||||||||| |||||||
Sbjct: 308 aaggttctctcaactcatgaaatataacttgagtggccttctgagatggtgatttctcca 249

                                                                       
Query: 589 catcattagttgtagagtcatcatctgcctcatcaaggatgatatctaatctgcttcgta 648
           | |||  ||| | || | |||||||||||||||||||||||||||| || | ||     |
Sbjct: 248 cttcagcagtggcagggccatcatctgcctcatcaaggatgatatccaaccggcnnnnna 189

                                                         
Query: 649 ggctcgcaatgatgtccaccttcagatcagatatagcttccgaaat 694
           | || | || ||||||| |||| ||||||||||||||||| |||||
Sbjct: 188 gacttgtaacgatgtccgcctttagatcagatatagcttctgaaat 143



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 314 tccaggcaccacatcccaaaatgattctagt 344
           ||||||||||| ||||||||| |||||||||
Sbjct: 529 tccaggcaccatatcccaaaaggattctagt 499

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>gb|AC104616.5| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0079H13 map E60284SA, complete sequence
          Length = 116863

 Score =  135 bits (68), Expect = 2e-28
 Identities = 89/96 (92%)
 Strand = Plus / Minus

                                                                         
Query: 443   cgttgtctctgattgttgcaagtagtcacaaatataggagccagctaaccaaggaatcag 502
             |||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 28331 cgttgtttctgattgttgcaagtagtcacaaatataggagccagccaaccaaggtatcag 28272

                                                 
Query: 503   gattcttctagggaatgagaaactataaggttctct 538
              |||||||||||||||| |||||| |||||| ||||
Sbjct: 28271 aattcttctagggaatgggaaactgtaaggtactct 28236



 Score =  115 bits (58), Expect = 2e-22
 Identities = 112/130 (86%)
 Strand = Plus / Minus

                                                                         
Query: 537   ctcaactcatgaaaattaacttgggtaaccttctgagatggtgaattctccacatcatta 596
             |||||||||||||||  |||||||||  ||||||||||  |||||||||||| ||  |||
Sbjct: 28017 ctcaactcatgaaaaacaacttgggtggccttctgagacagtgaattctccaaattgtta 27958

                                                                         
Query: 597   gttgtagagtcatcatctgcctcatcaaggatgatatctaatctgcttcgtaggctcgca 656
             || ||||||||||||||||||||||| || |||||||| ||||||||||  ||||| |  
Sbjct: 27957 gtagtagagtcatcatctgcctcatctagtatgatatccaatctgcttctcaggcttgtg 27898

                       
Query: 657   atgatgtcca 666
             ||||||||||
Sbjct: 27897 atgatgtcca 27888



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 411   atcacttccttgcagcgctccat 433
             |||||||||||||||||||||||
Sbjct: 28890 atcacttccttgcagcgctccat 28868



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 310   aagctccaggcaccacatcccaaaatgattctag 343
             |||||||||| |||||||||||||| ||| ||||
Sbjct: 28988 aagctccaggtaccacatcccaaaacgatcctag 28955

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>gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0038H12
              map E60284SA, complete sequence
          Length = 139190

 Score =  135 bits (68), Expect = 2e-28
 Identities = 89/96 (92%)
 Strand = Plus / Plus

                                                                          
Query: 443    cgttgtctctgattgttgcaagtagtcacaaatataggagccagctaaccaaggaatcag 502
              |||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 124086 cgttgtttctgattgttgcaagtagtcacaaatataggagccagccaaccaaggtatcag 124145

                                                  
Query: 503    gattcttctagggaatgagaaactataaggttctct 538
               |||||||||||||||| |||||| |||||| ||||
Sbjct: 124146 aattcttctagggaatgggaaactgtaaggtactct 124181



 Score =  115 bits (58), Expect = 2e-22
 Identities = 112/130 (86%)
 Strand = Plus / Plus

                                                                          
Query: 537    ctcaactcatgaaaattaacttgggtaaccttctgagatggtgaattctccacatcatta 596
              |||||||||||||||  |||||||||  ||||||||||  |||||||||||| ||  |||
Sbjct: 124400 ctcaactcatgaaaaacaacttgggtggccttctgagacagtgaattctccaaattgtta 124459

                                                                          
Query: 597    gttgtagagtcatcatctgcctcatcaaggatgatatctaatctgcttcgtaggctcgca 656
              || ||||||||||||||||||||||| || |||||||| ||||||||||  ||||| |  
Sbjct: 124460 gtagtagagtcatcatctgcctcatctagtatgatatccaatctgcttctcaggcttgtg 124519

                        
Query: 657    atgatgtcca 666
              ||||||||||
Sbjct: 124520 atgatgtcca 124529



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 411    atcacttccttgcagcgctccat 433
              |||||||||||||||||||||||
Sbjct: 123527 atcacttccttgcagcgctccat 123549



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 310    aagctccaggcaccacatcccaaaatgattctag 343
              |||||||||| |||||||||||||| ||| ||||
Sbjct: 123429 aagctccaggtaccacatcccaaaacgatcctag 123462

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score =  135 bits (68), Expect = 2e-28
 Identities = 89/96 (92%)
 Strand = Plus / Minus

                                                                           
Query: 443     cgttgtctctgattgttgcaagtagtcacaaatataggagccagctaaccaaggaatcag 502
               |||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 5799779 cgttgtttctgattgttgcaagtagtcacaaatataggagccagccaaccaaggtatcag 5799720

                                                   
Query: 503     gattcttctagggaatgagaaactataaggttctct 538
                |||||||||||||||| |||||| |||||| ||||
Sbjct: 5799719 aattcttctagggaatgggaaactgtaaggtactct 5799684



 Score =  115 bits (58), Expect = 2e-22
 Identities = 112/130 (86%)
 Strand = Plus / Minus

                                                                           
Query: 537     ctcaactcatgaaaattaacttgggtaaccttctgagatggtgaattctccacatcatta 596
               |||||||||||||||  |||||||||  ||||||||||  |||||||||||| ||  |||
Sbjct: 5799465 ctcaactcatgaaaaacaacttgggtggccttctgagacagtgaattctccaaattgtta 5799406

                                                                           
Query: 597     gttgtagagtcatcatctgcctcatcaaggatgatatctaatctgcttcgtaggctcgca 656
               || ||||||||||||||||||||||| || |||||||| ||||||||||  ||||| |  
Sbjct: 5799405 gtagtagagtcatcatctgcctcatctagtatgatatccaatctgcttctcaggcttgtg 5799346

                         
Query: 657     atgatgtcca 666
               ||||||||||
Sbjct: 5799345 atgatgtcca 5799336



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 411     atcacttccttgcagcgctccat 433
               |||||||||||||||||||||||
Sbjct: 5800338 atcacttccttgcagcgctccat 5800316



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 310     aagctccaggcaccacatcccaaaatgattctag 343
               |||||||||| |||||||||||||| ||| ||||
Sbjct: 5800436 aagctccaggtaccacatcccaaaacgatcctag 5800403

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  135 bits (68), Expect = 2e-28
 Identities = 89/96 (92%)
 Strand = Plus / Minus

                                                                           
Query: 443     cgttgtctctgattgttgcaagtagtcacaaatataggagccagctaaccaaggaatcag 502
               |||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 5800528 cgttgtttctgattgttgcaagtagtcacaaatataggagccagccaaccaaggtatcag 5800469

                                                   
Query: 503     gattcttctagggaatgagaaactataaggttctct 538
                |||||||||||||||| |||||| |||||| ||||
Sbjct: 5800468 aattcttctagggaatgggaaactgtaaggtactct 5800433



 Score =  115 bits (58), Expect = 2e-22
 Identities = 112/130 (86%)
 Strand = Plus / Minus

                                                                           
Query: 537     ctcaactcatgaaaattaacttgggtaaccttctgagatggtgaattctccacatcatta 596
               |||||||||||||||  |||||||||  ||||||||||  |||||||||||| ||  |||
Sbjct: 5800214 ctcaactcatgaaaaacaacttgggtggccttctgagacagtgaattctccaaattgtta 5800155

                                                                           
Query: 597     gttgtagagtcatcatctgcctcatcaaggatgatatctaatctgcttcgtaggctcgca 656
               || ||||||||||||||||||||||| || |||||||| ||||||||||  ||||| |  
Sbjct: 5800154 gtagtagagtcatcatctgcctcatctagtatgatatccaatctgcttctcaggcttgtg 5800095

                         
Query: 657     atgatgtcca 666
               ||||||||||
Sbjct: 5800094 atgatgtcca 5800085



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 411     atcacttccttgcagcgctccat 433
               |||||||||||||||||||||||
Sbjct: 5801087 atcacttccttgcagcgctccat 5801065



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 310     aagctccaggcaccacatcccaaaatgattctag 343
               |||||||||| |||||||||||||| ||| ||||
Sbjct: 5801185 aagctccaggtaccacatcccaaaacgatcctag 5801152

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
             complete sequence
          Length = 28434780

 Score =  123 bits (62), Expect = 8e-25
 Identities = 86/94 (91%)
 Strand = Plus / Minus

                                                                         
Query: 445   ttgtctctgattgttgcaagtagtcacaaatataggagccagctaaccaaggaatcagga 504
             |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct: 76901 ttgtttctgattgttgcaagtagtcacaaatataggagccagccaaccaaggtatcagaa 76842

                                               
Query: 505   ttcttctagggaatgagaaactataaggttctct 538
             |||||||||||||||  ||||| |||||| ||||
Sbjct: 76841 ttcttctagggaatggaaaactgtaaggtgctct 76808



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 110/130 (84%)
 Strand = Plus / Minus

                                                                         
Query: 537   ctcaactcatgaaaattaacttgggtaaccttctgagatggtgaattctccacatcatta 596
             |||||||||||||||  |||||| ||  ||||||||||  |||||||||||| ||  |||
Sbjct: 76549 ctcaactcatgaaaaacaacttgagtggccttctgagacagtgaattctccaaattgtta 76490

                                                                         
Query: 597   gttgtagagtcatcatctgcctcatcaaggatgatatctaatctgcttcgtaggctcgca 656
             || ||||||||||||||||||||||| || ||||| || ||||||||||  ||||| |  
Sbjct: 76489 gtagtagagtcatcatctgcctcatctagtatgatgtccaatctgcttctcaggcttgtg 76430

                       
Query: 657   atgatgtcca 666
             ||||||||||
Sbjct: 76429 atgatgtcca 76420



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 310   aagctccaggcaccacatcccaaaatgattctagtgtcgca 350
             |||||||||| |||||||||||||| ||| |||| ||||||
Sbjct: 77710 aagctccagggaccacatcccaaaacgatcctagcgtcgca 77670



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 411   atcacttccttgcagcgctccat 433
             |||||||||||||||||||||||
Sbjct: 77612 atcacttccttgcagcgctccat 77590

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>dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1147B12
          Length = 127902

 Score =  123 bits (62), Expect = 8e-25
 Identities = 86/94 (91%)
 Strand = Plus / Minus

                                                                         
Query: 445   ttgtctctgattgttgcaagtagtcacaaatataggagccagctaaccaaggaatcagga 504
             |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct: 76901 ttgtttctgattgttgcaagtagtcacaaatataggagccagccaaccaaggtatcagaa 76842

                                               
Query: 505   ttcttctagggaatgagaaactataaggttctct 538
             |||||||||||||||  ||||| |||||| ||||
Sbjct: 76841 ttcttctagggaatggaaaactgtaaggtgctct 76808



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 110/130 (84%)
 Strand = Plus / Minus

                                                                         
Query: 537   ctcaactcatgaaaattaacttgggtaaccttctgagatggtgaattctccacatcatta 596
             |||||||||||||||  |||||| ||  ||||||||||  |||||||||||| ||  |||
Sbjct: 76549 ctcaactcatgaaaaacaacttgagtggccttctgagacagtgaattctccaaattgtta 76490

                                                                         
Query: 597   gttgtagagtcatcatctgcctcatcaaggatgatatctaatctgcttcgtaggctcgca 656
             || ||||||||||||||||||||||| || ||||| || ||||||||||  ||||| |  
Sbjct: 76489 gtagtagagtcatcatctgcctcatctagtatgatgtccaatctgcttctcaggcttgtg 76430

                       
Query: 657   atgatgtcca 666
             ||||||||||
Sbjct: 76429 atgatgtcca 76420



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 310   aagctccaggcaccacatcccaaaatgattctagtgtcgca 350
             |||||||||| |||||||||||||| ||| |||| ||||||
Sbjct: 77710 aagctccagggaccacatcccaaaacgatcctagcgtcgca 77670



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 411   atcacttccttgcagcgctccat 433
             |||||||||||||||||||||||
Sbjct: 77612 atcacttccttgcagcgctccat 77590

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>gb|AC166096.2| Mus musculus BAC clone RP24-467F14 from chromosome 9, complete sequence
          Length = 142142

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 586    ccacatcattagttgtagagt 606
              |||||||||||||||||||||
Sbjct: 133713 ccacatcattagttgtagagt 133693

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>gb|AC104471.6| Homo sapiens 3 BAC RP11-80B17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160698

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 42    caaactgttcattgtgaaaga 62
             |||||||||||||||||||||
Sbjct: 36803 caaactgttcattgtgaaaga 36823

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>gb|AC112932.19| Mus musculus chromosome 3, clone RP24-512D23, complete sequence
          Length = 171097

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 93    aggtttggacaaaatgtaaga 113
             |||||||||||||||||||||
Sbjct: 48686 aggtttggacaaaatgtaaga 48706

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>gb|AC133291.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0542B04,
              complete sequence
          Length = 182823

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    aacatagcaagaattactct 140
              ||||||||||||||||||||
Sbjct: 149343 aacatagcaagaattactct 149362

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>gb|AC125406.4| Mus musculus BAC clone RP23-32C18 from chromosome 19, complete sequence
          Length = 208557

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 373    caacaatggaggagttctccactt 396
              ||||||||||||||| ||||||||
Sbjct: 146013 caacaatggaggagtgctccactt 146036

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>gb|AC145881.4| Pan troglodytes BAC clone RP43-7E18 from chromosome 7, complete
             sequence
          Length = 199758

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 481   agccagctaaccaaggaatc 500
             ||||||||||||||||||||
Sbjct: 62110 agccagctaaccaaggaatc 62091

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>ref|XM_759599.1| Theileria parva strain Muguga RNA helicase-1 (TP02_0123) partial
           mRNA
          Length = 1478

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 609 tcatctgcctcatcaaggat 628
           ||||||||||||||||||||
Sbjct: 760 tcatctgcctcatcaaggat 741

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>ref|XM_949204.1| Theileria annulata strain Ankara hypothetical protein (TA20690)
           partial mRNA
          Length = 2031

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 371 ttcaacaatggaggagttct 390
           ||||||||||||||||||||
Sbjct: 519 ttcaacaatggaggagttct 538

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>gb|AC109166.10| Mus musculus chromosome 7, clone RP23-310P1, complete sequence
          Length = 168878

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   tgtgctctccctgaacacat 256
             ||||||||||||||||||||
Sbjct: 38424 tgtgctctccctgaacacat 38405

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>emb|AL591344.1| Human DNA sequence from clone RP11-260H5 on chromosome 6 Contains the
             3' end of the gene for RU2 (RU2S), complete sequence
          Length = 63676

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 567   ttctgagatggtgaattctc 586
             ||||||||||||||||||||
Sbjct: 35171 ttctgagatggtgaattctc 35190

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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 193     ccaggagcacaaacaaggca 212
               ||||||||||||||||||||
Sbjct: 4119368 ccaggagcacaaacaaggca 4119387

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>gb|AY169401.1| Squalus acanthias melanocortin 4 receptor (MC4) gene, complete cds
          Length = 996

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 604 agtcatcatctgcctcatca 623
           ||||||||||||||||||||
Sbjct: 573 agtcatcatctgcctcatca 592

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>emb|AL133399.1| Human DNA sequence from clone RP1-305G21 on chromosome 11p13 Contains a
             pseudogene similar to S100C, STSs and GSSs, complete
             sequence
          Length = 82404

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 373   caacaatggaggagttctccacttctgt 400
             |||||| |||||||||||||| ||||||
Sbjct: 44255 caacaagggaggagttctccatttctgt 44228

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>emb|BX914220.7| Zebrafish DNA sequence from clone DKEYP-101F3 in linkage group 6,
             complete sequence
          Length = 94202

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 356   tgctgcggtttctggttcaa 375
             ||||||||||||||||||||
Sbjct: 51067 tgctgcggtttctggttcaa 51086

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>emb|AL662930.29| Mouse DNA sequence from clone RP23-212B18 on chromosome 11 Contains
             part of the gene for a novel protein (likely ortholog to
             homo sapiens FLJ38335), complete sequence
          Length = 198148

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   ctgtttccagtgatatcact 416
             ||||||||||||||||||||
Sbjct: 45382 ctgtttccagtgatatcact 45363

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>gb|AC027449.6| Homo sapiens chromosome 18, clone RP11-535A5, complete sequence
          Length = 149660

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 310  aagctccaggcaccacatcc 329
            ||||||||||||||||||||
Sbjct: 5249 aagctccaggcaccacatcc 5268

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>gb|AC009510.9| Homo sapiens 12p11-37.2-54.4 BAC RP11-1110J8 (Roswell Park Cancer
             Institute Human BAC Library) complete sequence
          Length = 145859

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    acaaactgttcattgtgaaa 60
             ||||||||||||||||||||
Sbjct: 15665 acaaactgttcattgtgaaa 15646

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>gb|AC092042.2| Homo sapiens chromosome 3 clone RP11-136C24, complete sequence
          Length = 171974

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 375   acaatggaggagttctccacttct 398
             |||||||||||||||||| |||||
Sbjct: 36563 acaatggaggagttctcctcttct 36586

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>gb|AC109644.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0459F09,
              complete sequence
          Length = 143533

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    aacatagcaagaattactct 140
              ||||||||||||||||||||
Sbjct: 131372 aacatagcaagaattactct 131353

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>gb|AC144559.1| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0459F09,
              complete sequence
          Length = 143533

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    aacatagcaagaattactct 140
              ||||||||||||||||||||
Sbjct: 131372 aacatagcaagaattactct 131353

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 121      aacatagcaagaattactct 140
                ||||||||||||||||||||
Sbjct: 20304830 aacatagcaagaattactct 20304849

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 366      tctggttcaacaatggagga 385
                ||||||||||||||||||||
Sbjct: 15355518 tctggttcaacaatggagga 15355537

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>gb|AC104801.4| Homo sapiens BAC clone RP11-356J12 from 2, complete sequence
          Length = 132644

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   caaaatgtaagatacacaaa 121
             ||||||||||||||||||||
Sbjct: 39737 caaaatgtaagatacacaaa 39718

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>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1299_A11
          Length = 160099

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 366  tctggttcaacaatggagga 385
            ||||||||||||||||||||
Sbjct: 4810 tctggttcaacaatggagga 4829

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>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0418B08
          Length = 165909

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 366    tctggttcaacaatggagga 385
              ||||||||||||||||||||
Sbjct: 134707 tctggttcaacaatggagga 134726

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>dbj|AB167808.1| Achaearanea tepidariorum wg mRNA for Wingless, partial cds
          Length = 1265

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 31  tgcagcacctacaaactgtt 50
           ||||||||||||||||||||
Sbjct: 492 tgcagcacctacaaactgtt 473

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>dbj|AK065753.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036G07, full
            insert sequence
          Length = 2214

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 121  aacatagcaagaattactct 140
            ||||||||||||||||||||
Sbjct: 2015 aacatagcaagaattactct 2034

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>gb|AY109346.1| Zea mays CL5575_3 mRNA sequence
          Length = 1305

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 308 ggaagctccaggcaccacat 327
           ||||||||||||||||||||
Sbjct: 679 ggaagctccaggcaccacat 660

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>gb|AY108765.1| Zea mays PCO088803 mRNA sequence
          Length = 704

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 415 cttccttgcagcgctccatt 434
           ||||||||||||||||||||
Sbjct: 195 cttccttgcagcgctccatt 176

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>emb|Z73898.1|CEZK822 Caenorhabditis elegans Cosmid ZK822, complete sequence
          Length = 25970

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 60   agaaactctacacttttcac 79
            ||||||||||||||||||||
Sbjct: 7530 agaaactctacacttttcac 7511

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 121      aacatagcaagaattactct 140
                ||||||||||||||||||||
Sbjct: 20615069 aacatagcaagaattactct 20615088

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>emb|AL732360.12| Mouse DNA sequence from clone RP23-405B14 on chromosome X, complete
              sequence
          Length = 197398

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    aagatacacaaaacatagca 129
              ||||||||||||||||||||
Sbjct: 175777 aagatacacaaaacatagca 175796

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>gb|AC129323.6| Mus musculus BAC clone RP23-237M15 from 9, complete sequence
          Length = 170293

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 516    aatgagaaactataaggttc 535
              ||||||||||||||||||||
Sbjct: 128058 aatgagaaactataaggttc 128077

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>dbj|AP004608.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-627G23, complete
             sequences
          Length = 65900

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 387   ttctccacttctgtttccag 406
             ||||||||||||||||||||
Sbjct: 25732 ttctccacttctgtttccag 25713

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>dbj|AP003971.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-850O8, complete
              sequence
          Length = 147440

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 387    ttctccacttctgtttccag 406
              ||||||||||||||||||||
Sbjct: 142132 ttctccacttctgtttccag 142113


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,581,212
Number of Sequences: 3902068
Number of extensions: 6581212
Number of successful extensions: 164221
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 163917
Number of HSP's gapped (non-prelim): 303
length of query: 694
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 671
effective length of database: 17,143,297,704
effective search space: 11503152759384
effective search space used: 11503152759384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result