| Clone Name | rbaal1i24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY107174.1| Zea mays PCO092707 mRNA sequence Length = 909 Score = 299 bits (151), Expect = 6e-78 Identities = 379/455 (83%) Strand = Plus / Minus Query: 149 ggtttcaagtcgaccacaattacagtgatgttatcctggcttcctttcttcagcgccagc 208 ||||||||||| |||||||| |||||||| || |||| | | || |||||||| || ||| Sbjct: 555 ggtttcaagtcaaccacaatgacagtgatattgtcctcggtacccttcttcagtgcgagc 496 Query: 209 ctcacgagatagtcagcagctgcctgcgcggcaggatcggtggatccatcgcctccatct 268 |||| ||||| |||||||| || || || |||||||| ||||| |||| || | || Sbjct: 495 ctcataagataatcagcagcagcttgtgcagcaggatcattggattcatcaccctcgtca 436 Query: 269 gacgatgatgttgtaacgctgttgttcttgtgccactgctggatttgccgacgtgcaacc 328 || |||||| ||| || | |||||||||||||||| ||||||| |||||||| ||| | Sbjct: 435 cacaatgatgatgtgacaccgttgttcttgtgccacagctggatctgccgacgcgcagct 376 Query: 329 ttacacgcctcttcattcgacacgacgtcccaaagcccgtcgcttgccagaatgagacaa 388 || || ||||||||||||||||| || ||||| ||||| || ||||| |||||||| || Sbjct: 375 ttgcatgcctcttcattcgacactacatcccacagcccatcacttgcaagaatgaggcag 316 Query: 389 tcatcatcttttgcccgaggaacaactgtaacttctggttttggaatgatgtatggcttc 448 || |||||||| |||| ||||||||| || ||||||||||||||||||| | |||| ||| Sbjct: 315 tcgtcatctttcgccctaggaacaacggtgacttctggttttggaatgacgaatggtttc 256 Query: 449 aagtatcggtcaccaatggatcgtgacatagcaagtatcccggacactcggtgtccattc 508 || |||||||| ||||| |||| ||||||||||||||| ||||| || | | || ||| Sbjct: 255 aaatatcggtccccaatcgatcttgacatagcaagtataccggagaccctatagccgttc 196 Query: 509 cattggatgaccttgcctcccgcagcctcaatcctcgcgcgctcatccttcctgtcaggc 568 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 195 cattggatgaccttgcctcccagggcctcaatcctcgcgcgctcatccttcctgtcaggc 136 Query: 569 ttctgatcaattgagagagcaacaggctccttccc 603 || |||||||| || || | || ||||||||||| Sbjct: 135 ttgtgatcaatcgacagctctactggctccttccc 101
>ref|XM_475780.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1164 Score = 295 bits (149), Expect = 9e-77 Identities = 392/473 (82%) Strand = Plus / Minus Query: 149 ggtttcaagtcgaccacaattacagtgatgttatcctggcttcctttcttcagcgccagc 208 |||||||||||||| ||||| |||||||||||||||| ||| ||||||||||| || || Sbjct: 1136 ggtttcaagtcgacaacaatgacagtgatgttatcctcgctgcctttcttcagagcgagt 1077 Query: 209 ctcacgagatagtcagcagctgcctgcgcggcaggatcggtggatccatcgcctccatct 268 |||| ||||| || |||||||| || || ||||| ||||||||||| || || |||| Sbjct: 1076 ctcatcagataatcggcagctgcttgggcagcagggtcggtggatccttcaccctcatca 1017 Query: 269 gacgatgatgttgtaacgctgttgttcttgtgccactgctggatttgccgacgtgcaacc 328 ||| ||| || || | ||| ||||||||||||||| | |||| || || ||||| || Sbjct: 1016 gacaatggtgatgcagcgccattgttcttgtgccacagaaggatctgtcggcgtgcgact 957 Query: 329 ttacacgcctcttcattcgacacgacgtcccaaagcccgtcgcttgccagaatgagacaa 388 || || ||||||||||| ||||| || ||||| ||||| |||||||| ||||| ||||| Sbjct: 956 ttgcatgcctcttcatttgacacaacatcccacagcccatcgcttgctagaataagacag 897 Query: 389 tcatcatcttttgcccgaggaacaactgtaacttctggttttggaatgatgtatggcttc 448 |||||||| || ||||| ||||| || ||||||| ||||||||||||| |||| ||| Sbjct: 896 tcatcatccttcgcccgtggaacgaccataacttccggttttggaatgacaaatggtttc 837 Query: 449 aagtatcggtcaccaatggatcgtgacatagcaagtatcccggacactcggtgtccattc 508 | || || ||||| || ||||| |||||||||||||| |||||||| |||| |||||| Sbjct: 836 agatagcgatcaccgattgatcgggacatagcaagtataccggacacccggtaaccattc 777 Query: 509 cattggatgaccttgcctcccgcagcctcaatcctcgcgcgctcatccttcctgtcaggc 568 ||||||||||||||||||||| || |||||||| || ||||||||||||||||||||| Sbjct: 776 cattggatgaccttgcctccctgggcttcaatccttgcccgctcatccttcctgtcaggc 717 Query: 569 ttctgatcaattgagagagcaacaggctccttcccgcgcgagagcacgatgcg 621 || ||||||||||| | || || |||||||||||||| ||||||||||||| Sbjct: 716 ttgtgatcaattgacaaggctacgggctccttcccgcggcagagcacgatgcg 664
>gb|AY105241.1| Zea mays PCO129205 mRNA sequence Length = 718 Score = 176 bits (89), Expect = 6e-41 Identities = 233/281 (82%) Strand = Plus / Minus Query: 289 gttgttcttgtgccactgctggatttgccgacgtgcaaccttacacgcctcttcattcga 348 |||||||||||||||| ||||||||||| || ||| | || |||||||| || |||| Sbjct: 317 gttgttcttgtgccacacttggatttgccggcgcgcagctttgcacgcctcctcgttcgt 258 Query: 349 cacgacgtcccaaagcccgtcgcttgccagaatgagacaatcatcatcttttgcccgagg 408 ||| || ||||| ||||| |||||||| || |||||||| || |||||||| |||| || Sbjct: 257 caccacatcccacagcccatcgcttgcgaggatgagacagtcgtcatctttcgccctggg 198 Query: 409 aacaactgtaacttctggttttggaatgatgtatggcttcaagtatcggtcaccaatgga 468 ||| || || || ||||||||||||| || | | ||||||| || ||||| ||||| || Sbjct: 197 aaccaccgtgacctctggttttggaacgacgaacggcttcagataccggtccccaatcga 138 Query: 469 tcgtgacatagcaagtatcccggacactcggtgtccattccattggatgaccttgcctcc 528 || ||||||||||||||| ||||| || |||| |||||||||||||||||||| || || Sbjct: 137 tcttgacatagcaagtataccggagacccggtagccattccattggatgacctttccccc 78 Query: 529 cgcagcctcaatcctcgcgcgctcatccttcctgtcaggct 569 | |||||||||||||| || ||||||||||||||||||| Sbjct: 77 cagggcctcaatcctcgctcgttcatccttcctgtcaggct 37 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Minus Query: 31 atatacatgtacaattcttgaaacccaacg 60 ||||||||||||||||||||| ||||||| Sbjct: 654 atatacatgtacaattcttgacgcccaacg 625
>gb|AC119291.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052K01, complete sequence Length = 144395 Score = 161 bits (81), Expect = 3e-36 Identities = 237/289 (82%) Strand = Plus / Plus Query: 149 ggtttcaagtcgaccacaattacagtgatgttatcctggcttcctttcttcagcgccagc 208 |||||||||||||| ||||| |||||||||||||||| ||| ||||||||||| || || Sbjct: 12181 ggtttcaagtcgacaacaatgacagtgatgttatcctcgctgcctttcttcagagcgagt 12240 Query: 209 ctcacgagatagtcagcagctgcctgcgcggcaggatcggtggatccatcgcctccatct 268 |||| ||||| || |||||||| || || ||||| ||||||||||| || || |||| Sbjct: 12241 ctcatcagataatcggcagctgcttgggcagcagggtcggtggatccttcaccctcatca 12300 Query: 269 gacgatgatgttgtaacgctgttgttcttgtgccactgctggatttgccgacgtgcaacc 328 ||| ||| || || | ||| ||||||||||||||| | |||| || || ||||| || Sbjct: 12301 gacaatggtgatgcagcgccattgttcttgtgccacagaaggatctgtcggcgtgcgact 12360 Query: 329 ttacacgcctcttcattcgacacgacgtcccaaagcccgtcgcttgccagaatgagacaa 388 || || ||||||||||| ||||| || ||||| ||||| |||||||| ||||| ||||| Sbjct: 12361 ttgcatgcctcttcatttgacacaacatcccacagcccatcgcttgctagaataagacag 12420 Query: 389 tcatcatcttttgcccgaggaacaactgtaacttctggttttggaatga 437 |||||||| || ||||| ||||| || ||||||| ||||||||||||| Sbjct: 12421 tcatcatccttcgcccgtggaacgaccataacttccggttttggaatga 12469 Score = 117 bits (59), Expect = 5e-23 Identities = 92/103 (89%) Strand = Plus / Plus Query: 467 gatcgtgacatagcaagtatcccggacactcggtgtccattccattggatgaccttgcct 526 ||||| |||||||||||||| |||||||| |||| |||||||||||||||||||||||| Sbjct: 13490 gatcgggacatagcaagtataccggacacccggtaaccattccattggatgaccttgcct 13549 Query: 527 cccgcagcctcaatcctcgcgcgctcatccttcctgtcaggct 569 ||| || |||||||| || |||||||||||||||||||||| Sbjct: 13550 ccctgggcttcaatccttgcccgctcatccttcctgtcaggct 13592 Score = 44.1 bits (22), Expect = 0.55 Identities = 43/50 (86%) Strand = Plus / Plus Query: 572 tgatcaattgagagagcaacaggctccttcccgcgcgagagcacgatgcg 621 ||||||||||| | || || |||||||||||||| ||||||||||||| Sbjct: 13685 tgatcaattgacaaggctacgggctccttcccgcggcagagcacgatgcg 13734 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 25 tctagcatatacatgtacaatt 46 |||||||||||||||||||||| Sbjct: 12016 tctagcatatacatgtacaatt 12037
>gb|AC097112.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1741_B01, complete sequence Length = 147704 Score = 161 bits (81), Expect = 3e-36 Identities = 237/289 (82%) Strand = Plus / Plus Query: 149 ggtttcaagtcgaccacaattacagtgatgttatcctggcttcctttcttcagcgccagc 208 |||||||||||||| ||||| |||||||||||||||| ||| ||||||||||| || || Sbjct: 143397 ggtttcaagtcgacaacaatgacagtgatgttatcctcgctgcctttcttcagagcgagt 143456 Query: 209 ctcacgagatagtcagcagctgcctgcgcggcaggatcggtggatccatcgcctccatct 268 |||| ||||| || |||||||| || || ||||| ||||||||||| || || |||| Sbjct: 143457 ctcatcagataatcggcagctgcttgggcagcagggtcggtggatccttcaccctcatca 143516 Query: 269 gacgatgatgttgtaacgctgttgttcttgtgccactgctggatttgccgacgtgcaacc 328 ||| ||| || || | ||| ||||||||||||||| | |||| || || ||||| || Sbjct: 143517 gacaatggtgatgcagcgccattgttcttgtgccacagaaggatctgtcggcgtgcgact 143576 Query: 329 ttacacgcctcttcattcgacacgacgtcccaaagcccgtcgcttgccagaatgagacaa 388 || || ||||||||||| ||||| || ||||| ||||| |||||||| ||||| ||||| Sbjct: 143577 ttgcatgcctcttcatttgacacaacatcccacagcccatcgcttgctagaataagacag 143636 Query: 389 tcatcatcttttgcccgaggaacaactgtaacttctggttttggaatga 437 |||||||| || ||||| ||||| || ||||||| ||||||||||||| Sbjct: 143637 tcatcatccttcgcccgtggaacgaccataacttccggttttggaatga 143685 Score = 117 bits (59), Expect = 5e-23 Identities = 92/103 (89%) Strand = Plus / Plus Query: 467 gatcgtgacatagcaagtatcccggacactcggtgtccattccattggatgaccttgcct 526 ||||| |||||||||||||| |||||||| |||| |||||||||||||||||||||||| Sbjct: 144706 gatcgggacatagcaagtataccggacacccggtaaccattccattggatgaccttgcct 144765 Query: 527 cccgcagcctcaatcctcgcgcgctcatccttcctgtcaggct 569 ||| || |||||||| || |||||||||||||||||||||| Sbjct: 144766 ccctgggcttcaatccttgcccgctcatccttcctgtcaggct 144808 Score = 44.1 bits (22), Expect = 0.55 Identities = 43/50 (86%) Strand = Plus / Plus Query: 572 tgatcaattgagagagcaacaggctccttcccgcgcgagagcacgatgcg 621 ||||||||||| | || || |||||||||||||| ||||||||||||| Sbjct: 144901 tgatcaattgacaaggctacgggctccttcccgcggcagagcacgatgcg 144950 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 25 tctagcatatacatgtacaatt 46 |||||||||||||||||||||| Sbjct: 143232 tctagcatatacatgtacaatt 143253
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 161 bits (81), Expect = 3e-36 Identities = 237/289 (82%) Strand = Plus / Plus Query: 149 ggtttcaagtcgaccacaattacagtgatgttatcctggcttcctttcttcagcgccagc 208 |||||||||||||| ||||| |||||||||||||||| ||| ||||||||||| || || Sbjct: 26498706 ggtttcaagtcgacaacaatgacagtgatgttatcctcgctgcctttcttcagagcgagt 26498765 Query: 209 ctcacgagatagtcagcagctgcctgcgcggcaggatcggtggatccatcgcctccatct 268 |||| ||||| || |||||||| || || ||||| ||||||||||| || || |||| Sbjct: 26498766 ctcatcagataatcggcagctgcttgggcagcagggtcggtggatccttcaccctcatca 26498825 Query: 269 gacgatgatgttgtaacgctgttgttcttgtgccactgctggatttgccgacgtgcaacc 328 ||| ||| || || | ||| ||||||||||||||| | |||| || || ||||| || Sbjct: 26498826 gacaatggtgatgcagcgccattgttcttgtgccacagaaggatctgtcggcgtgcgact 26498885 Query: 329 ttacacgcctcttcattcgacacgacgtcccaaagcccgtcgcttgccagaatgagacaa 388 || || ||||||||||| ||||| || ||||| ||||| |||||||| ||||| ||||| Sbjct: 26498886 ttgcatgcctcttcatttgacacaacatcccacagcccatcgcttgctagaataagacag 26498945 Query: 389 tcatcatcttttgcccgaggaacaactgtaacttctggttttggaatga 437 |||||||| || ||||| ||||| || ||||||| ||||||||||||| Sbjct: 26498946 tcatcatccttcgcccgtggaacgaccataacttccggttttggaatga 26498994 Score = 117 bits (59), Expect = 5e-23 Identities = 92/103 (89%) Strand = Plus / Plus Query: 467 gatcgtgacatagcaagtatcccggacactcggtgtccattccattggatgaccttgcct 526 ||||| |||||||||||||| |||||||| |||| |||||||||||||||||||||||| Sbjct: 26500015 gatcgggacatagcaagtataccggacacccggtaaccattccattggatgaccttgcct 26500074 Query: 527 cccgcagcctcaatcctcgcgcgctcatccttcctgtcaggct 569 ||| || |||||||| || |||||||||||||||||||||| Sbjct: 26500075 ccctgggcttcaatccttgcccgctcatccttcctgtcaggct 26500117 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Plus Query: 503 ccattccattggatgaccttgcctcccgcagcctcaatcctcgcg 547 |||||||||||||| |||||||| ||| ||||||||||||||| Sbjct: 29320125 ccattccattggataaccttgccacccagcgcctcaatcctcgcg 29320169 Score = 44.1 bits (22), Expect = 0.55 Identities = 43/50 (86%) Strand = Plus / Plus Query: 572 tgatcaattgagagagcaacaggctccttcccgcgcgagagcacgatgcg 621 ||||||||||| | || || |||||||||||||| ||||||||||||| Sbjct: 26500210 tgatcaattgacaaggctacgggctccttcccgcggcagagcacgatgcg 26500259 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 25 tctagcatatacatgtacaatt 46 |||||||||||||||||||||| Sbjct: 26498541 tctagcatatacatgtacaatt 26498562 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 347 gacacgacgtcccaaagcccgtcgcttgccag 378 ||||| |||||||| ||||||||||| ||||| Sbjct: 28303838 gacaccacgtcccacagcccgtcgctcgccag 28303869
>gb|BT018289.1| Zea mays clone EL01T0205D02.c mRNA sequence Length = 1539 Score = 157 bits (79), Expect = 5e-35 Identities = 229/279 (82%) Strand = Plus / Minus Query: 289 gttgttcttgtgccactgctggatttgccgacgtgcaaccttacacgcctcttcattcga 348 |||||||||||||||| ||||||||||| || ||| | || || |||||||| |||| Sbjct: 987 gttgttcttgtgccacacttggatttgccggcgcgcagctttgcatgcctcttcgttcgt 928 Query: 349 cacgacgtcccaaagcccgtcgcttgccagaatgagacaatcatcatcttttgcccgagg 408 ||| || ||||| ||||| |||||||| || |||||||| || |||||||| |||| || Sbjct: 927 caccacatcccacagcccatcgcttgcgaggatgagacagtcgtcatctttcgccctggg 868 Query: 409 aacaactgtaacttctggttttggaatgatgtatggcttcaagtatcggtcaccaatgga 468 ||| || || || |||||||||||||| | | | ||||||| || ||||| ||||| || Sbjct: 867 aacgaccgtgacctctggttttggaatcacgaacggcttcagataccggtccccaatcga 808 Query: 469 tcgtgacatagcaagtatcccggacactcggtgtccattccattggatgaccttgcctcc 528 || ||||||||||||||| ||||| || |||| |||| ||||||||||||||| || || Sbjct: 807 tcttgacatagcaagtataccggagacccggtagccataccattggatgacctttccccc 748 Query: 529 cgcagcctcaatcctcgcgcgctcatccttcctgtcagg 567 | ||||||||| |||| || ||||||||||||||||| Sbjct: 747 cagggcctcaatcgtcgctcgttcatccttcctgtcagg 709 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Minus Query: 31 atatacatgtacaattcttgaaacccaacg 60 ||||||||||||||||||||| ||||||| Sbjct: 1324 atatacatgtacaattcttgacgcccaacg 1295
>gb|BT017295.1| Zea mays clone EL01N0315F01.c mRNA sequence Length = 1444 Score = 58.0 bits (29), Expect = 4e-05 Identities = 188/241 (78%) Strand = Plus / Minus Query: 336 cctcttcattcgacacgacgtcccaaagcccgtcgcttgccagaatgagacaatcatcat 395 |||||||||| |||| || ||||| || ||||| || || ||||| || || || |||| Sbjct: 986 cctcttcatttgacattacatcccagaggccgtcactggcaagaataaggcactcgtcat 927 Query: 396 cttttgcccgaggaacaactgtaacttctggttttggaatgatgtatggcttcaagtatc 455 | || ||||| ||||| | ||| || ||||| |||||| || ||||||||| |||| Sbjct: 926 ccttagcccgcggaactattgttacctctgggactggaattatccatggcttcagatatc 867 Query: 456 ggtcaccaatggatcgtgacatagcaagtatcccggacactcggtgtccattccattgga 515 ||||||||| ||||| ||||| ||||| | ||| | ||||| | || |||||||| | Sbjct: 866 tgtcaccaattgatcgcgacattgcaagaacaccgaaaactcgataaccgttccattgta 807 Query: 516 tgaccttgcctcccgcagcctcaatcctcgcgcgctcatccttcctgtcaggcttctgat 575 |||||||||| ||| | ||||||||||| || |||||||| ||||| ||| || |||| Sbjct: 806 tgaccttgccaccctctgcctcaatccttgcatactcatcctccctgttaggtttatgat 747 Query: 576 c 576 | Sbjct: 746 c 746
>gb|AY104084.1| Zea mays PCO105468 mRNA sequence Length = 1247 Score = 58.0 bits (29), Expect = 4e-05 Identities = 188/241 (78%) Strand = Plus / Minus Query: 336 cctcttcattcgacacgacgtcccaaagcccgtcgcttgccagaatgagacaatcatcat 395 |||||||||| |||| || ||||| || ||||| || || ||||| || || || |||| Sbjct: 681 cctcttcatttgacattacatcccagaggccgtcactggcaagaataaggcactcgtcat 622 Query: 396 cttttgcccgaggaacaactgtaacttctggttttggaatgatgtatggcttcaagtatc 455 | || ||||| ||||| | ||| || ||||| |||||| || ||||||||| |||| Sbjct: 621 ccttagcccgcggaactattgttacctctgggactggaattatccatggcttcagatatc 562 Query: 456 ggtcaccaatggatcgtgacatagcaagtatcccggacactcggtgtccattccattgga 515 ||||||||| ||||| ||||| ||||| | ||| | ||||| | || |||||||| | Sbjct: 561 tgtcaccaattgatcgcgacattgcaagaacaccgaaaactcgataaccgttccattgta 502 Query: 516 tgaccttgcctcccgcagcctcaatcctcgcgcgctcatccttcctgtcaggcttctgat 575 |||||||||| ||| | ||||||||||| || |||||||| ||||| ||| || |||| Sbjct: 501 tgaccttgccaccctctgcctcaatccttgcatactcatcctccctgttaggtttatgat 442 Query: 576 c 576 | Sbjct: 441 c 441
>ref|XM_476022.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1338 Score = 56.0 bits (28), Expect = 1e-04 Identities = 166/212 (78%) Strand = Plus / Minus Query: 336 cctcttcattcgacacgacgtcccaaagcccgtcgcttgccagaatgagacaatcatcat 395 ||||||| ||||||| || |||||||| || || ||||| ||||| || |||||||| | Sbjct: 1117 cctcttcgttcgacattacatcccaaaggccatcacttgcaagaataaggcaatcatcgt 1058 Query: 396 cttttgcccgaggaacaactgtaacttctggttttggaatgatgtatggcttcaagtatc 455 ||||||| |||| |||||||| || || || || || || |||||||||| |||| Sbjct: 1057 cttttgcacgagcgacaactgtgacctcagggaccgggattatatatggcttcaggtatt 998 Query: 456 ggtcaccaatggatcgtgacatagcaagtatcccggacactcggtgtccattccattgga 515 ||| || || ||||| ||||| ||||| | ||| ||||| | ||||||||||||| Sbjct: 997 tgtccccgattgatcgcgacatggcaagaacaccgagaactcgataaccattccattgga 938 Query: 516 tgaccttgcctcccgcagcctcaatcctcgcg 547 | |||||||| ||| ||||||||||||||| Sbjct: 937 taaccttgccacccagcgcctcaatcctcgcg 906
>dbj|AK104323.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-G08, full insert sequence Length = 1916 Score = 56.0 bits (28), Expect = 1e-04 Identities = 166/212 (78%) Strand = Plus / Minus Query: 336 cctcttcattcgacacgacgtcccaaagcccgtcgcttgccagaatgagacaatcatcat 395 ||||||| ||||||| || |||||||| || || ||||| ||||| || |||||||| | Sbjct: 1497 cctcttcgttcgacattacatcccaaaggccatcacttgcaagaataaggcaatcatcgt 1438 Query: 396 cttttgcccgaggaacaactgtaacttctggttttggaatgatgtatggcttcaagtatc 455 ||||||| |||| |||||||| || || || || || || |||||||||| |||| Sbjct: 1437 cttttgcacgagcgacaactgtgacctcagggaccgggattatatatggcttcaggtatt 1378 Query: 456 ggtcaccaatggatcgtgacatagcaagtatcccggacactcggtgtccattccattgga 515 ||| || || ||||| ||||| ||||| | ||| ||||| | ||||||||||||| Sbjct: 1377 tgtccccgattgatcgcgacatggcaagaacaccgagaactcgataaccattccattgga 1318 Query: 516 tgaccttgcctcccgcagcctcaatcctcgcg 547 | |||||||| ||| ||||||||||||||| Sbjct: 1317 taaccttgccacccagcgcctcaatcctcgcg 1286
>dbj|AK070388.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054G02, full insert sequence Length = 2179 Score = 56.0 bits (28), Expect = 1e-04 Identities = 166/212 (78%) Strand = Plus / Minus Query: 336 cctcttcattcgacacgacgtcccaaagcccgtcgcttgccagaatgagacaatcatcat 395 ||||||| ||||||| || |||||||| || || ||||| ||||| || |||||||| | Sbjct: 1530 cctcttcgttcgacattacatcccaaaggccatcacttgcaagaataaggcaatcatcgt 1471 Query: 396 cttttgcccgaggaacaactgtaacttctggttttggaatgatgtatggcttcaagtatc 455 ||||||| |||| |||||||| || || || || || || |||||||||| |||| Sbjct: 1470 cttttgcacgagcgacaactgtgacctcagggaccgggattatatatggcttcaggtatt 1411 Query: 456 ggtcaccaatggatcgtgacatagcaagtatcccggacactcggtgtccattccattgga 515 ||| || || ||||| ||||| ||||| | ||| ||||| | ||||||||||||| Sbjct: 1410 tgtccccgattgatcgcgacatggcaagaacaccgagaactcgataaccattccattgga 1351 Query: 516 tgaccttgcctcccgcagcctcaatcctcgcg 547 | |||||||| ||| ||||||||||||||| Sbjct: 1350 taaccttgccacccagcgcctcaatcctcgcg 1319
>dbj|AK067627.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013113I18, full insert sequence Length = 2169 Score = 56.0 bits (28), Expect = 1e-04 Identities = 166/212 (78%) Strand = Plus / Minus Query: 336 cctcttcattcgacacgacgtcccaaagcccgtcgcttgccagaatgagacaatcatcat 395 ||||||| ||||||| || |||||||| || || ||||| ||||| || |||||||| | Sbjct: 1537 cctcttcgttcgacattacatcccaaaggccatcacttgcaagaataaggcaatcatcgt 1478 Query: 396 cttttgcccgaggaacaactgtaacttctggttttggaatgatgtatggcttcaagtatc 455 ||||||| |||| |||||||| || || || || || || |||||||||| |||| Sbjct: 1477 cttttgcacgagcgacaactgtgacctcagggaccgggattatatatggcttcaggtatt 1418 Query: 456 ggtcaccaatggatcgtgacatagcaagtatcccggacactcggtgtccattccattgga 515 ||| || || ||||| ||||| ||||| | ||| ||||| | ||||||||||||| Sbjct: 1417 tgtccccgattgatcgcgacatggcaagaacaccgagaactcgataaccattccattgga 1358 Query: 516 tgaccttgcctcccgcagcctcaatcctcgcg 547 | |||||||| ||| ||||||||||||||| Sbjct: 1357 taaccttgccacccagcgcctcaatcctcgcg 1326
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08, complete sequence Length = 142196 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Plus Query: 503 ccattccattggatgaccttgcctcccgcagcctcaatcctcgcg 547 |||||||||||||| |||||||| ||| ||||||||||||||| Sbjct: 98782 ccattccattggataaccttgccacccagcgcctcaatcctcgcg 98826
>ref|NM_118741.2| Arabidopsis thaliana ABI1 (ABA INSENSITIVE 1); calcium ion binding / protein phosphatase type 2C AT4G26080 (ABI1) mRNA, complete cds Length = 2031 Score = 44.1 bits (22), Expect = 0.55 Identities = 58/70 (82%) Strand = Plus / Minus Query: 331 acacgcctcttcattcgacacgacgtcccaaagcccgtcgcttgccagaatgagacaatc 390 |||||| ||||||| || || || ||||||| |||||| || |||| ||| |||||||| Sbjct: 1533 acacgcttcttcatccgtcattacatcccaaaccccgtcactcgccaaaatcagacaatc 1474 Query: 391 atcatctttt 400 ||| |||||| Sbjct: 1473 atcttctttt 1464
>ref|NM_190586.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1218 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Minus Query: 349 cacgacgtcccaaagcccgtcgcttgccag 378 |||||||||||| ||||||||||| ||||| Sbjct: 948 cacgacgtcccatagcccgtcgctggccag 919
>gb|AY142623.1| Arabidopsis thaliana phosphatase ABI1 (At4g26080) mRNA, complete cds Length = 1336 Score = 44.1 bits (22), Expect = 0.55 Identities = 58/70 (82%) Strand = Plus / Minus Query: 331 acacgcctcttcattcgacacgacgtcccaaagcccgtcgcttgccagaatgagacaatc 390 |||||| ||||||| || || || ||||||| |||||| || |||| ||| |||||||| Sbjct: 1077 acacgcttcttcatccgtcattacatcccaaaccccgtcactcgccaaaatcagacaatc 1018 Query: 391 atcatctttt 400 ||| |||||| Sbjct: 1017 atcttctttt 1008
>emb|X77116.1|ATMRABI1 A.thaliana mRNA for ABI1 protein Length = 1981 Score = 44.1 bits (22), Expect = 0.55 Identities = 58/70 (82%) Strand = Plus / Minus Query: 331 acacgcctcttcattcgacacgacgtcccaaagcccgtcgcttgccagaatgagacaatc 390 |||||| ||||||| || || || ||||||| |||||| || |||| ||| |||||||| Sbjct: 1508 acacgcttcttcatccgtcattacatcccaaaccccgtcactcgccaaaatcagacaatc 1449 Query: 391 atcatctttt 400 ||| |||||| Sbjct: 1448 atcttctttt 1439
>emb|X78886.1|ATABI1G A.thaliana (Landsberg erecta) ABI1 gene Length = 2244 Score = 44.1 bits (22), Expect = 0.55 Identities = 58/70 (82%) Strand = Plus / Minus Query: 331 acacgcctcttcattcgacacgacgtcccaaagcccgtcgcttgccagaatgagacaatc 390 |||||| ||||||| || || || ||||||| |||||| || |||| ||| |||||||| Sbjct: 1770 acacgcttcttcatccgtcattacatcccaaaccccgtcactcgccaaaatcagacaatc 1711 Query: 391 atcatctttt 400 ||| |||||| Sbjct: 1710 atcttctttt 1701
>gb|AY035073.1| Arabidopsis thaliana putative protein phosphatase ABI1 (At4g26080) mRNA, complete cds Length = 1735 Score = 44.1 bits (22), Expect = 0.55 Identities = 58/70 (82%) Strand = Plus / Minus Query: 331 acacgcctcttcattcgacacgacgtcccaaagcccgtcgcttgccagaatgagacaatc 390 |||||| ||||||| || || || ||||||| |||||| || |||| ||| |||||||| Sbjct: 1220 acacgcttcttcatccgtcattacatcccaaaccccgtcactcgccaaaatcagacaatc 1161 Query: 391 atcatctttt 400 ||| |||||| Sbjct: 1160 atcttctttt 1151
>emb|AL161564.2|ATCHRIV64 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64 Length = 196286 Score = 44.1 bits (22), Expect = 0.55 Identities = 58/70 (82%) Strand = Plus / Plus Query: 331 acacgcctcttcattcgacacgacgtcccaaagcccgtcgcttgccagaatgagacaatc 390 |||||| ||||||| || || || ||||||| |||||| || |||| ||| |||||||| Sbjct: 108922 acacgcttcttcatccgtcattacatcccaaaccccgtcactcgccaaaatcagacaatc 108981 Query: 391 atcatctttt 400 ||| |||||| Sbjct: 108982 atcttctttt 108991
>emb|AL049483.1|ATF20B18 Arabidopsis thaliana DNA chromosome 4, BAC clone F20B18 (ESSA project) Length = 104738 Score = 44.1 bits (22), Expect = 0.55 Identities = 58/70 (82%) Strand = Plus / Plus Query: 331 acacgcctcttcattcgacacgacgtcccaaagcccgtcgcttgccagaatgagacaatc 390 |||||| ||||||| || || || ||||||| |||||| || |||| ||| |||||||| Sbjct: 58237 acacgcttcttcatccgtcattacatcccaaaccccgtcactcgccaaaatcagacaatc 58296 Query: 391 atcatctttt 400 ||| |||||| Sbjct: 58297 atcttctttt 58306
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Minus Query: 349 cacgacgtcccaaagcccgtcgcttgccag 378 |||||||||||| ||||||||||| ||||| Sbjct: 36338834 cacgacgtcccatagcccgtcgctggccag 36338805
>emb|BX828393.1|CNS0A2I6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH83ZH06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1838 Score = 44.1 bits (22), Expect = 0.55 Identities = 58/70 (82%) Strand = Plus / Minus Query: 331 acacgcctcttcattcgacacgacgtcccaaagcccgtcgcttgccagaatgagacaatc 390 |||||| ||||||| || || || ||||||| |||||| || |||| ||| |||||||| Sbjct: 1501 acacgcttcttcatccgtcattacatcccaaaccccgtcactcgccaaaatcagacaatc 1442 Query: 391 atcatctttt 400 ||| |||||| Sbjct: 1441 atcttctttt 1432
>emb|BX826530.1|CNS0A2ID Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB35ZG06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1690 Score = 44.1 bits (22), Expect = 0.55 Identities = 58/70 (82%) Strand = Plus / Minus Query: 331 acacgcctcttcattcgacacgacgtcccaaagcccgtcgcttgccagaatgagacaatc 390 |||||| ||||||| || || || ||||||| |||||| || |||| ||| |||||||| Sbjct: 1275 acacgcttcttcatccgtcattacatcccaaaccccgtcactcgccaaaatcagacaatc 1216 Query: 391 atcatctttt 400 ||| |||||| Sbjct: 1215 atcttctttt 1206
>dbj|AP003251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0446B05 Length = 149145 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Minus Query: 349 cacgacgtcccaaagcccgtcgcttgccag 378 |||||||||||| ||||||||||| ||||| Sbjct: 88711 cacgacgtcccatagcccgtcgctggccag 88682
>dbj|AK071996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091F23, full insert sequence Length = 1834 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Minus Query: 349 cacgacgtcccaaagcccgtcgcttgccag 378 |||||||||||| ||||||||||| ||||| Sbjct: 1400 cacgacgtcccatagcccgtcgctggccag 1371
>dbj|AK065949.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013046H22, full insert sequence Length = 1755 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Minus Query: 349 cacgacgtcccaaagcccgtcgcttgccag 378 |||||||||||| ||||||||||| ||||| Sbjct: 1321 cacgacgtcccatagcccgtcgctggccag 1292
>emb|AL672241.6| Mouse DNA sequence from clone RP23-147D3 on chromosome 2, complete sequence Length = 197925 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 27 tagcatatacatgtacaattct 48 |||||||||||||||||||||| Sbjct: 64995 tagcatatacatgtacaattct 65016
>gb|U12856.1|ATU12856 Arabidopsis thaliana Col-0 abscisic acid insensitive protein (ABI1) mRNA, complete cds Length = 2000 Score = 44.1 bits (22), Expect = 0.55 Identities = 58/70 (82%) Strand = Plus / Minus Query: 331 acacgcctcttcattcgacacgacgtcccaaagcccgtcgcttgccagaatgagacaatc 390 |||||| ||||||| || || || ||||||| |||||| || |||| ||| |||||||| Sbjct: 1508 acacgcttcttcatccgtcattacatcccaaaccccgtcactcgccaaaatcagacaatc 1449 Query: 391 atcatctttt 400 ||| |||||| Sbjct: 1448 atcttctttt 1439
>emb|AJ277743.1|FSY277743 Fagus sylvatica mRNA for ABA induced protein phosphatase 2C (PP2C), (pp2C1 gene) Length = 1385 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 347 gacacgacgtcccaaagcccgtcgcttgc 375 ||||| |||||||||||||| |||||||| Sbjct: 1121 gacactacgtcccaaagcccatcgcttgc 1093
>emb|AL627394.15| Mouse DNA sequence from clone RP23-174I9 on chromosome 4, complete sequence Length = 116283 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 aaaggtgggtcaagtctcatt 83 ||||||||||||||||||||| Sbjct: 9346 aaaggtgggtcaagtctcatt 9366
>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete sequence Length = 1019846 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 atgatgttgtaacgctgttgttct 296 |||||||||||||||||| ||||| Sbjct: 274173 atgatgttgtaacgctgtggttct 274150
>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10, complete sequence Length = 187034 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 347 gacacgacgtcccaaagcccgtcgcttgccag 378 ||||| |||||||| ||||||||||| ||||| Sbjct: 88080 gacaccacgtcccacagcccgtcgctcgccag 88111
>gb|AC134569.4| Mus musculus BAC clone RP24-240H21 from chromosome 16, complete sequence Length = 168794 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 actgtaacttctggttttgg 432 |||||||||||||||||||| Sbjct: 151432 actgtaacttctggttttgg 151413
>gb|AC133093.4| Mus musculus BAC clone RP23-442I18 from chromosome 8, complete sequence Length = 177876 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 atcctggcttcctttcttca 200 |||||||||||||||||||| Sbjct: 145085 atcctggcttcctttcttca 145104
>gb|AC013509.5|AC013509 Homo sapiens chromosome , clone RP11-115I9, complete sequence Length = 151544 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cctggcttcctttcttcagc 202 |||||||||||||||||||| Sbjct: 31187 cctggcttcctttcttcagc 31206
>ref|XM_623830.1| PREDICTED: Apis mellifera similar to lysosomal alpha-N-acetyl glucosaminidase (LOC551437), mRNA Length = 3420 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 atacatgtacaattcttgaa 52 |||||||||||||||||||| Sbjct: 348 atacatgtacaattcttgaa 329
>gb|AC008207.3|AC008207 Drosophila melanogaster, chromosome 3R, region 96C-96D, BAC clone BACR17E12, complete sequence Length = 184887 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 aaacccaacgaaaaaggtgg 70 |||||||||||||||||||| Sbjct: 71898 aaacccaacgaaaaaggtgg 71879
>gb|AC008208.5|AC008208 Drosophila melanogaster, chromosome 3R, region 96D-96D, BAC clone BACR06L08, complete sequence Length = 170220 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 aaacccaacgaaaaaggtgg 70 |||||||||||||||||||| Sbjct: 7840 aaacccaacgaaaaaggtgg 7821
>gb|AC011716.7|AC011716 Homo sapiens chromosome 8 clone RP11-65D13, complete sequence Length = 172327 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cctggcttcctttcttcagc 202 |||||||||||||||||||| Sbjct: 2649 cctggcttcctttcttcagc 2630
>dbj|AK108969.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-D11, full insert sequence Length = 1347 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 347 gacacgacgtcccaaagcccgtcgcttgccag 378 ||||| |||||||| ||||||||||| ||||| Sbjct: 998 gacaccacgtcccacagcccgtcgctcgccag 967
>gb|AE003751.3| Drosophila melanogaster chromosome 3R, section 89 of 118 of the complete sequence Length = 307443 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 aaacccaacgaaaaaggtgg 70 |||||||||||||||||||| Sbjct: 11576 aaacccaacgaaaaaggtgg 11557
>gb|AC147972.3| Gallus gallus BAC clone CH261-78M4 from chromosome unknown, complete sequence Length = 197959 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 catatacatgtacaattcttgaaa 53 ||||||||||| |||||||||||| Sbjct: 137755 catatacatgttcaattcttgaaa 137778
>gb|AC124180.5| Mus musculus BAC clone RP23-200I16 from 16, complete sequence Length = 199422 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 actgtaacttctggttttgg 432 |||||||||||||||||||| Sbjct: 2087 actgtaacttctggttttgg 2068
>gb|AC138622.4| Mus musculus BAC clone RP23-100J15 from chromosome 6, complete sequence Length = 194611 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 556 cttcctgtcaggcttctgat 575 |||||||||||||||||||| Sbjct: 96345 cttcctgtcaggcttctgat 96326 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,701,311 Number of Sequences: 3902068 Number of extensions: 4701311 Number of successful extensions: 83148 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83000 Number of HSP's gapped (non-prelim): 142 length of query: 633 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 610 effective length of database: 17,143,297,704 effective search space: 10457411599440 effective search space used: 10457411599440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)