ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28l21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GPA1_TRIVA (Q86D96) Guanine nucleotide-binding protein alpha-1 s... 31 1.6
2ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219 31 2.1
3V50K_BYDVP (P09516) 50 kDa protein (ORF 4) 30 2.7
4TOB1_RAT (Q8R5K6) Tob1 protein (Transducer of erbB-2 1) 30 4.6
5FTSK1_RALSO (Q8XRH0) DNA translocase ftsK 1 30 4.6
6PHLA1_MOUSE (Q62392) Pleckstrin homology-like domain family A me... 29 6.0
7LY75_MESAU (Q920P9) Lymphocyte antigen 75 precursor (DEC-205) (C... 29 7.8

>GPA1_TRIVA (Q86D96) Guanine nucleotide-binding protein alpha-1 subunit (G|
           alpha-1) (GTP-binding protein alpha subunit 1)
          Length = 402

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 225 KPQPEPQKPSEATPTPVP 278
           +PQPEP KP+E  P P P
Sbjct: 42  QPQPEPPKPAEPAPAPAP 59



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>ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219|
          Length = 722

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 225 KPQPEPQKPSEATPTPVP 278
           +P+PEP+   EATPTP P
Sbjct: 245 QPEPEPEPEREATPTPAP 262



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>V50K_BYDVP (P09516) 50 kDa protein (ORF 4)|
          Length = 450

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 219 TAKPQPEPQKPSEATPTPVPLEVIDYM 299
           T +P P PQ   E TP PVP    +Y+
Sbjct: 17  TPQPTPAPQPTPEPTPAPVPKRFFEYI 43



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>TOB1_RAT (Q8R5K6) Tob1 protein (Transducer of erbB-2 1)|
          Length = 365

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 186 NSLLALGMS*QTAKPQPEPQKPSEATPTPVP 278
           +SL  LG+  Q  +PQP+PQ+P    P P P
Sbjct: 229 HSLYGLGLGSQQ-QPQPQPQQPPSQPPPPPP 258



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>FTSK1_RALSO (Q8XRH0) DNA translocase ftsK 1|
          Length = 959

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 201 LGMS*QTAKPQPEPQKPSEATPTPVPLEVIDYMLPHFSL 317
           +G     A P P P     A   P P  V+DY LP+ +L
Sbjct: 438 VGQVVSNAMPAPAPAAAPVAAAPPAPPRVVDYRLPNVAL 476



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>PHLA1_MOUSE (Q62392) Pleckstrin homology-like domain family A member 1 (T-cell|
           death-associated gene 51 protein) (Proline- and
           glutamine-rich protein) (PQR protein)
          Length = 261

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 225 KPQPEPQKPSEATPTPVPLEVIDYMLPH 308
           +PQP+PQ   +  P P P ++  Y  PH
Sbjct: 182 QPQPQPQPQPQPQPQPQPQQLHSYPHPH 209



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>LY75_MESAU (Q920P9) Lymphocyte antigen 75 precursor (DEC-205) (CD205 antigen)|
          Length = 1722

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 30/112 (26%), Positives = 41/112 (36%), Gaps = 10/112 (8%)
 Frame = +3

Query: 177 QACNSLLALGMS*QTAKPQPEPQKPSEATPTP----------VPLEVIDYMLPHFSLFYS 326
           ++C S  AL +     K    PQ+P EATP P           P  +  Y + H      
Sbjct: 612 KSCRSFRALSI----CKKMSGPQEPEEATPKPDEPCPEGWHTFPSNLSCYKVFHIERTVR 667

Query: 327 RI*GEQVLDFTWDACGMGTGCHPPCLSHKSQLYSCS*PHHWPQAQHSSEIWL 482
           R   E+   F         G H P  SH +++       H  Q Q S + WL
Sbjct: 668 RRTWEEAERFC-----QALGAHLPSFSHMNEVKEFL---HLLQDQFSVQRWL 711


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,970,125
Number of Sequences: 219361
Number of extensions: 1497272
Number of successful extensions: 5429
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5308
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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