ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags29a20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CASQ1_CHICK (P19204) Calsequestrin-1 precursor (Calsequestrin, s... 37 0.064
2GPI2_YEAST (P46961) Phosphatidylinositol N-acetylglucosaminyltra... 33 0.92
3HEM3_RICTY (Q68WR3) Porphobilinogen deaminase (EC 2.5.1.61) (PBG... 32 2.1
4ATPD_RHOCA (P72244) ATP synthase delta chain (EC 3.6.3.14) 32 2.7
5COX1_CRION (P98003) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ... 31 3.5
6YEX0_YEAST (P40085) Hypothetical 64.8 kDa protein in GDI1-COX15 ... 31 4.6

>CASQ1_CHICK (P19204) Calsequestrin-1 precursor (Calsequestrin, skeletal muscle|
           isoform) (Aspartactin) (Laminin-binding protein)
          Length = 406

 Score = 37.0 bits (84), Expect = 0.064
 Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
 Frame = -3

Query: 698 QSLGALLLDNEMKGKVASLMNLLDEEGFFSIDDES-IDWAKKSFTDLVEQFNALTGHCFD 522
           +S+G  ++D++   K+A  + L++E   +   +E  I++  +  TD++ +F  L     D
Sbjct: 87  RSIGFGMVDSKKDAKLAKKLGLVEEGSLYVFKEERLIEFDGELATDVLVEF--LLDLLED 144

Query: 521 GCYAIQGIMDLKKFLPTKDDMCDDAVKMVGYANEAWNENIEQFWRDTRHYE 369
               I   ++L+ F     D  DD +K++GY     +E+ + F     H++
Sbjct: 145 PVEVINSKLELQAF-----DQIDDEIKLIGYFKGEDSEHYKAFEEAAEHFQ 190



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>GPI2_YEAST (P46961) Phosphatidylinositol N-acetylglucosaminyltransferase GPI2|
           subunit (EC 2.4.1.198)
          Length = 280

 Score = 33.1 bits (74), Expect = 0.92
 Identities = 18/47 (38%), Positives = 29/47 (61%)
 Frame = +3

Query: 330 LFNRLSEHVIVFMFIMPCVPPKLLNIFIPRLICITNHFNRIITHIIL 470
           L +RLS  + VF F++ C+    LNI +P  + +TN    II++II+
Sbjct: 180 LSSRLSTTIDVFCFLLICIQ---LNIILPTYLSVTNKVVPIISNIIV 223



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>HEM3_RICTY (Q68WR3) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)|
           (Hydroxymethylbilane synthase) (HMBS)
           (Pre-uroporphyrinogen synthase)
          Length = 299

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
 Frame = +3

Query: 288 IDAFLLSGSHMYK-HLFNRLSEHVIVFMFIMPCVPPKLLNIFIPR----LICITNHFNRI 452
           +DA +LS + + + + FN+   H+I +  I+PCV   ++ + I +    +  I N  N I
Sbjct: 163 VDATILSYAGLKRLNAFNKKYCHLIEYSQILPCVGQGVIAVEIRKDDNAMFNICNQINHI 222

Query: 453 ITHIILRW*EFFKIHYSLDCITSIKA 530
            T  +++    F  H   +C T I A
Sbjct: 223 PTFELIKPERAFLEHLDANCSTPIGA 248



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>ATPD_RHOCA (P72244) ATP synthase delta chain (EC 3.6.3.14)|
          Length = 186

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 737 NIAVREREMNSYTQSLGALLLDNEMKGKVASLMNLLDEEG 618
           N+AV E  +      LG+ ++D  +K K+ASL N + E G
Sbjct: 147 NVAVDESLIGGMIVKLGSRMIDTTVKAKLASLQNAMKEVG 186



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>COX1_CRION (P98003) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I) (Fragment)
          Length = 340

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 279 ISTIDAFLLSGSHMYKHLFNRLSEHVIVFMFIMPCVPPKLLNIFIPRL 422
           +S I   +L G + Y ++       V+VF FIMP +   L+N F+P L
Sbjct: 42  LSIIGCGVLFGDYQYYNVLVTTHGLVMVFAFIMPVMMGGLVNYFVPVL 89



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>YEX0_YEAST (P40085) Hypothetical 64.8 kDa protein in GDI1-COX15 intergenic|
           region
          Length = 556

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 22/63 (34%), Positives = 32/63 (50%)
 Frame = -3

Query: 737 NIAVREREMNSYTQSLGALLLDNEMKGKVASLMNLLDEEGFFSIDDESIDWAKKSFTDLV 558
           NIAV     NSY+ +L  LLL  +     +S++   D+EGFF I          +  D+V
Sbjct: 248 NIAV-----NSYSNALLTLLLSMQFAEIKSSVLKKFDKEGFFQI----------TIADVV 292

Query: 557 EQF 549
           E+F
Sbjct: 293 ERF 295


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,996,652
Number of Sequences: 219361
Number of extensions: 2266630
Number of successful extensions: 5826
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5802
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7706249192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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