| Clone Name | rbags29a20 |
|---|---|
| Clone Library Name | barley_pub |
>CASQ1_CHICK (P19204) Calsequestrin-1 precursor (Calsequestrin, skeletal muscle| isoform) (Aspartactin) (Laminin-binding protein) Length = 406 Score = 37.0 bits (84), Expect = 0.064 Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 1/111 (0%) Frame = -3 Query: 698 QSLGALLLDNEMKGKVASLMNLLDEEGFFSIDDES-IDWAKKSFTDLVEQFNALTGHCFD 522 +S+G ++D++ K+A + L++E + +E I++ + TD++ +F L D Sbjct: 87 RSIGFGMVDSKKDAKLAKKLGLVEEGSLYVFKEERLIEFDGELATDVLVEF--LLDLLED 144 Query: 521 GCYAIQGIMDLKKFLPTKDDMCDDAVKMVGYANEAWNENIEQFWRDTRHYE 369 I ++L+ F D DD +K++GY +E+ + F H++ Sbjct: 145 PVEVINSKLELQAF-----DQIDDEIKLIGYFKGEDSEHYKAFEEAAEHFQ 190
>GPI2_YEAST (P46961) Phosphatidylinositol N-acetylglucosaminyltransferase GPI2| subunit (EC 2.4.1.198) Length = 280 Score = 33.1 bits (74), Expect = 0.92 Identities = 18/47 (38%), Positives = 29/47 (61%) Frame = +3 Query: 330 LFNRLSEHVIVFMFIMPCVPPKLLNIFIPRLICITNHFNRIITHIIL 470 L +RLS + VF F++ C+ LNI +P + +TN II++II+ Sbjct: 180 LSSRLSTTIDVFCFLLICIQ---LNIILPTYLSVTNKVVPIISNIIV 223
>HEM3_RICTY (Q68WR3) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 299 Score = 32.0 bits (71), Expect = 2.1 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 5/86 (5%) Frame = +3 Query: 288 IDAFLLSGSHMYK-HLFNRLSEHVIVFMFIMPCVPPKLLNIFIPR----LICITNHFNRI 452 +DA +LS + + + + FN+ H+I + I+PCV ++ + I + + I N N I Sbjct: 163 VDATILSYAGLKRLNAFNKKYCHLIEYSQILPCVGQGVIAVEIRKDDNAMFNICNQINHI 222 Query: 453 ITHIILRW*EFFKIHYSLDCITSIKA 530 T +++ F H +C T I A Sbjct: 223 PTFELIKPERAFLEHLDANCSTPIGA 248
>ATPD_RHOCA (P72244) ATP synthase delta chain (EC 3.6.3.14)| Length = 186 Score = 31.6 bits (70), Expect = 2.7 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = -3 Query: 737 NIAVREREMNSYTQSLGALLLDNEMKGKVASLMNLLDEEG 618 N+AV E + LG+ ++D +K K+ASL N + E G Sbjct: 147 NVAVDESLIGGMIVKLGSRMIDTTVKAKLASLQNAMKEVG 186
>COX1_CRION (P98003) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) (Fragment) Length = 340 Score = 31.2 bits (69), Expect = 3.5 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = +3 Query: 279 ISTIDAFLLSGSHMYKHLFNRLSEHVIVFMFIMPCVPPKLLNIFIPRL 422 +S I +L G + Y ++ V+VF FIMP + L+N F+P L Sbjct: 42 LSIIGCGVLFGDYQYYNVLVTTHGLVMVFAFIMPVMMGGLVNYFVPVL 89
>YEX0_YEAST (P40085) Hypothetical 64.8 kDa protein in GDI1-COX15 intergenic| region Length = 556 Score = 30.8 bits (68), Expect = 4.6 Identities = 22/63 (34%), Positives = 32/63 (50%) Frame = -3 Query: 737 NIAVREREMNSYTQSLGALLLDNEMKGKVASLMNLLDEEGFFSIDDESIDWAKKSFTDLV 558 NIAV NSY+ +L LLL + +S++ D+EGFF I + D+V Sbjct: 248 NIAV-----NSYSNALLTLLLSMQFAEIKSSVLKKFDKEGFFQI----------TIADVV 292 Query: 557 EQF 549 E+F Sbjct: 293 ERF 295 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 106,996,652 Number of Sequences: 219361 Number of extensions: 2266630 Number of successful extensions: 5826 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 5584 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5802 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7706249192 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)