| Clone Name | rbags28l20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY105170.1| Zea mays PCO132861 mRNA sequence Length = 1175 Score = 95.6 bits (48), Expect = 8e-17 Identities = 77/88 (87%) Strand = Plus / Minus Query: 238 actgggagataaacgccctccgctntcnaccaaatattctnagctcgcttgtctngaaca 297 |||||||||||||| ||||| ||| || ||||||| |||| ||||||||| ||| | ||| Sbjct: 859 actgggagataaacaccctctgctgtcaaccaaatgttctcagctcgcttctctcggaca 800 Query: 298 ccacagacctcttgctgcccaccaccaa 325 || |||||||||||||||||||| |||| Sbjct: 799 ccgcagacctcttgctgcccaccgccaa 772
>gb|AY107580.1| Zea mays PCO132860 mRNA sequence Length = 1095 Score = 89.7 bits (45), Expect = 5e-15 Identities = 74/85 (87%) Strand = Plus / Minus Query: 241 gggagataaacgccctccgctntcnaccaaatattctnagctcgcttgtctngaacacca 300 ||||||||||| ||||| ||| | ||||||| |||| ||||||||| ||| | ||||| Sbjct: 801 gggagataaacaccctctgctgccaaccaaatgttctcagctcgcttctctcggacaccg 742 Query: 301 cagacctcttgctgcccaccaccaa 325 ||||||||||||||||||||||||| Sbjct: 741 cagacctcttgctgcccaccaccaa 717
>ref|XM_482616.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1210 Score = 67.9 bits (34), Expect = 2e-08 Identities = 53/60 (88%) Strand = Plus / Minus Query: 266 accaaatattctnagctcgcttgtctngaacaccacagacctcttgctgcccaccaccaa 325 |||||||||| | ||||||||| ||| ||| ||||| |||||||||||||||||||||| Sbjct: 853 accaaatattttcagctcgcttctctctaacgccacatacctcttgctgcccaccaccaa 794
>dbj|AK058761.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-B11, full insert sequence Length = 1210 Score = 67.9 bits (34), Expect = 2e-08 Identities = 53/60 (88%) Strand = Plus / Minus Query: 266 accaaatattctnagctcgcttgtctngaacaccacagacctcttgctgcccaccaccaa 325 |||||||||| | ||||||||| ||| ||| ||||| |||||||||||||||||||||| Sbjct: 853 accaaatattttcagctcgcttctctctaacgccacatacctcttgctgcccaccaccaa 794
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 acctcttgctgcccaccaccaa 325 |||||||||||||||||||||| Sbjct: 21427186 acctcttgctgcccaccaccaa 21427207
>dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0528B09 Length = 156897 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 acctcttgctgcccaccaccaa 325 |||||||||||||||||||||| Sbjct: 31181 acctcttgctgcccaccaccaa 31202
>dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0524F03 Length = 167696 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 acctcttgctgcccaccaccaa 325 |||||||||||||||||||||| Sbjct: 127111 acctcttgctgcccaccaccaa 127132
>gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, complete sequence Length = 200908 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 gaaaatgtcaacaaaattcct 211 ||||||||||||||||||||| Sbjct: 138496 gaaaatgtcaacaaaattcct 138516
>ref|XM_481233.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1187 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 294 aacaccacagacctcttgctgcccacca 321 ||||||||| ||||||||||| |||||| Sbjct: 899 aacaccacatacctcttgctgtccacca 872
>ref|XM_611675.2| PREDICTED: Bos taurus similar to Mitochondrial ornithine transporter 1 (Solute carrier family 25, member 15) (LOC532560), mRNA Length = 3471 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 tgtcaacaaaattcctgatg 215 |||||||||||||||||||| Sbjct: 3291 tgtcaacaaaattcctgatg 3310
>gb|BC035710.1| Homo sapiens zinc finger and BTB domain containing 34, mRNA (cDNA clone IMAGE:5579751), partial cds Length = 3441 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ccacagacctcttgctgccc 317 |||||||||||||||||||| Sbjct: 2876 ccacagacctcttgctgccc 2895
>emb|AL591475.9| Human DNA sequence from clone RP11-314C16 on chromosome 6 Contains a novel gene and a CpG island, complete sequence Length = 48654 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 tttccaaatagaaaaatact 117 |||||||||||||||||||| Sbjct: 17731 tttccaaatagaaaaatact 17712
>gb|BC020929.1| Homo sapiens zinc finger and BTB domain containing 34, mRNA (cDNA clone IMAGE:4251598), complete cds Length = 2082 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ccacagacctcttgctgccc 317 |||||||||||||||||||| Sbjct: 1502 ccacagacctcttgctgccc 1521
>emb|AL354944.22| Human DNA sequence from clone RP11-106H5 on chromosome 9 Contains the 3'end of the ZNF297B gene for zinc finger protein 297B (ZNF-X, FLJ22470, KIAA0414), the gene for a novel protein (KIAA1993) and a CpG island, complete sequence Length = 49144 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ccacagacctcttgctgccc 317 |||||||||||||||||||| Sbjct: 48766 ccacagacctcttgctgccc 48785
>emb|AL160169.12| Human DNA sequence from clone RP11-405C6 on chromosome 9 Contains the 3' end of the gene for a novel protein (KIAA1993), the 5' end of the RALGPS1A gene for Ral guanine nucleotide exchange factor RalGPS1A (RALGEF2, KIAA0351) and a CpG island, complete sequence Length = 124025 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ccacagacctcttgctgccc 317 |||||||||||||||||||| Sbjct: 1618 ccacagacctcttgctgccc 1637
>dbj|AK055661.1| Homo sapiens cDNA FLJ31099 fis, clone IMR321000230 Length = 2370 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ccacagacctcttgctgccc 317 |||||||||||||||||||| Sbjct: 1807 ccacagacctcttgctgccc 1826
>ref|XM_937669.1| PREDICTED: Homo sapiens zinc finger and BTB domain containing 34 (ZBTB34), mRNA Length = 6553 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ccacagacctcttgctgccc 317 |||||||||||||||||||| Sbjct: 6006 ccacagacctcttgctgccc 6025
>ref|XM_928961.1| PREDICTED: Homo sapiens zinc finger and BTB domain containing 34 (ZBTB34), mRNA Length = 6843 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ccacagacctcttgctgccc 317 |||||||||||||||||||| Sbjct: 6296 ccacagacctcttgctgccc 6315
>emb|BX824164.1|CNS0A7RY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH27ZF02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1105 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 tctttcatcgactgggagataaac 251 ||||| |||||||||||||||||| Sbjct: 933 tcttttatcgactgggagataaac 956
>gb|AC104785.5| Homo sapiens BAC clone RP11-84C13 from 4, complete sequence Length = 112003 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 attctagttctgggtactat 149 |||||||||||||||||||| Sbjct: 25263 attctagttctgggtactat 25244
>dbj|AK074274.1| Homo sapiens cDNA FLJ23694 fis, clone HEP10358 Length = 2209 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ccacagacctcttgctgccc 317 |||||||||||||||||||| Sbjct: 1664 ccacagacctcttgctgccc 1683
>dbj|AK100085.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002O21, full insert sequence Length = 1188 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 294 aacaccacagacctcttgctgcccacca 321 ||||||||| ||||||||||| |||||| Sbjct: 899 aacaccacatacctcttgctgtccacca 872
>dbj|AB082524.1| Homo sapiens mRNA for KIAA1993 protein Length = 6545 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ccacagacctcttgctgccc 317 |||||||||||||||||||| Sbjct: 6013 ccacagacctcttgctgccc 6032 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,068,949 Number of Sequences: 3902068 Number of extensions: 3068949 Number of successful extensions: 101013 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100962 Number of HSP's gapped (non-prelim): 51 length of query: 326 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 304 effective length of database: 17,147,199,772 effective search space: 5212748730688 effective search space used: 5212748730688 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)