ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28l20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY105170.1| Zea mays PCO132861 mRNA sequence 96 8e-17
2gb|AY107580.1| Zea mays PCO132860 mRNA sequence 90 5e-15
3ref|XM_482616.1| Oryza sativa (japonica cultivar-group), mRNA 68 2e-08
4dbj|AK058761.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.28
6dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.28
7dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.28
8gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, comple... 42 1.1
9ref|XM_481233.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.3
10ref|XM_611675.2| PREDICTED: Bos taurus similar to Mitochondrial ... 40 4.3
11gb|BC035710.1| Homo sapiens zinc finger and BTB domain containin... 40 4.3
12emb|AL591475.9| Human DNA sequence from clone RP11-314C16 on chr... 40 4.3
13gb|BC020929.1| Homo sapiens zinc finger and BTB domain containin... 40 4.3
14emb|AL354944.22| Human DNA sequence from clone RP11-106H5 on chr... 40 4.3
15emb|AL160169.12| Human DNA sequence from clone RP11-405C6 on chr... 40 4.3
16dbj|AK055661.1| Homo sapiens cDNA FLJ31099 fis, clone IMR321000230 40 4.3
17ref|XM_937669.1| PREDICTED: Homo sapiens zinc finger and BTB dom... 40 4.3
18ref|XM_928961.1| PREDICTED: Homo sapiens zinc finger and BTB dom... 40 4.3
19emb|BX824164.1|CNS0A7RY Arabidopsis thaliana Full-length cDNA Co... 40 4.3
20gb|AC104785.5| Homo sapiens BAC clone RP11-84C13 from 4, complet... 40 4.3
21dbj|AK074274.1| Homo sapiens cDNA FLJ23694 fis, clone HEP10358 40 4.3
22dbj|AK100085.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
23dbj|AB082524.1| Homo sapiens mRNA for KIAA1993 protein 40 4.3

>gb|AY105170.1| Zea mays PCO132861 mRNA sequence
          Length = 1175

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 77/88 (87%)
 Strand = Plus / Minus

                                                                       
Query: 238 actgggagataaacgccctccgctntcnaccaaatattctnagctcgcttgtctngaaca 297
           |||||||||||||| ||||| ||| || ||||||| |||| ||||||||| ||| | |||
Sbjct: 859 actgggagataaacaccctctgctgtcaaccaaatgttctcagctcgcttctctcggaca 800

                                       
Query: 298 ccacagacctcttgctgcccaccaccaa 325
           || |||||||||||||||||||| ||||
Sbjct: 799 ccgcagacctcttgctgcccaccgccaa 772



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>gb|AY107580.1| Zea mays PCO132860 mRNA sequence
          Length = 1095

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 74/85 (87%)
 Strand = Plus / Minus

                                                                       
Query: 241 gggagataaacgccctccgctntcnaccaaatattctnagctcgcttgtctngaacacca 300
           ||||||||||| ||||| |||  | ||||||| |||| ||||||||| ||| | ||||| 
Sbjct: 801 gggagataaacaccctctgctgccaaccaaatgttctcagctcgcttctctcggacaccg 742

                                    
Query: 301 cagacctcttgctgcccaccaccaa 325
           |||||||||||||||||||||||||
Sbjct: 741 cagacctcttgctgcccaccaccaa 717



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>ref|XM_482616.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1210

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                       
Query: 266 accaaatattctnagctcgcttgtctngaacaccacagacctcttgctgcccaccaccaa 325
           |||||||||| | ||||||||| |||  ||| ||||| ||||||||||||||||||||||
Sbjct: 853 accaaatattttcagctcgcttctctctaacgccacatacctcttgctgcccaccaccaa 794



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>dbj|AK058761.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-B11, full
           insert sequence
          Length = 1210

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                       
Query: 266 accaaatattctnagctcgcttgtctngaacaccacagacctcttgctgcccaccaccaa 325
           |||||||||| | ||||||||| |||  ||| ||||| ||||||||||||||||||||||
Sbjct: 853 accaaatattttcagctcgcttctctctaacgccacatacctcttgctgcccaccaccaa 794



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 304      acctcttgctgcccaccaccaa 325
                ||||||||||||||||||||||
Sbjct: 21427186 acctcttgctgcccaccaccaa 21427207



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>dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0528B09
          Length = 156897

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 304   acctcttgctgcccaccaccaa 325
             ||||||||||||||||||||||
Sbjct: 31181 acctcttgctgcccaccaccaa 31202



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>dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0524F03
          Length = 167696

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 304    acctcttgctgcccaccaccaa 325
              ||||||||||||||||||||||
Sbjct: 127111 acctcttgctgcccaccaccaa 127132



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>gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, complete sequence
          Length = 200908

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 191    gaaaatgtcaacaaaattcct 211
              |||||||||||||||||||||
Sbjct: 138496 gaaaatgtcaacaaaattcct 138516



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>ref|XM_481233.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1187

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 294 aacaccacagacctcttgctgcccacca 321
           ||||||||| ||||||||||| ||||||
Sbjct: 899 aacaccacatacctcttgctgtccacca 872



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>ref|XM_611675.2| PREDICTED: Bos taurus similar to Mitochondrial ornithine transporter
            1 (Solute carrier family 25, member 15) (LOC532560), mRNA
          Length = 3471

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 196  tgtcaacaaaattcctgatg 215
            ||||||||||||||||||||
Sbjct: 3291 tgtcaacaaaattcctgatg 3310



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>gb|BC035710.1| Homo sapiens zinc finger and BTB domain containing 34, mRNA (cDNA
            clone IMAGE:5579751), partial cds
          Length = 3441

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 298  ccacagacctcttgctgccc 317
            ||||||||||||||||||||
Sbjct: 2876 ccacagacctcttgctgccc 2895



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>emb|AL591475.9| Human DNA sequence from clone RP11-314C16 on chromosome 6 Contains a
             novel gene and a CpG island, complete sequence
          Length = 48654

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    tttccaaatagaaaaatact 117
             ||||||||||||||||||||
Sbjct: 17731 tttccaaatagaaaaatact 17712



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>gb|BC020929.1| Homo sapiens zinc finger and BTB domain containing 34, mRNA (cDNA
            clone IMAGE:4251598), complete cds
          Length = 2082

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 298  ccacagacctcttgctgccc 317
            ||||||||||||||||||||
Sbjct: 1502 ccacagacctcttgctgccc 1521



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>emb|AL354944.22| Human DNA sequence from clone RP11-106H5 on chromosome 9 Contains the
             3'end of the ZNF297B gene for zinc finger protein 297B
             (ZNF-X, FLJ22470, KIAA0414), the gene for a novel protein
             (KIAA1993) and a CpG island, complete sequence
          Length = 49144

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   ccacagacctcttgctgccc 317
             ||||||||||||||||||||
Sbjct: 48766 ccacagacctcttgctgccc 48785



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>emb|AL160169.12| Human DNA sequence from clone RP11-405C6 on chromosome 9 Contains the
            3' end of the gene for a novel protein (KIAA1993), the 5'
            end of the RALGPS1A gene for Ral guanine nucleotide
            exchange factor RalGPS1A (RALGEF2, KIAA0351) and a CpG
            island, complete sequence
          Length = 124025

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 298  ccacagacctcttgctgccc 317
            ||||||||||||||||||||
Sbjct: 1618 ccacagacctcttgctgccc 1637



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>dbj|AK055661.1| Homo sapiens cDNA FLJ31099 fis, clone IMR321000230
          Length = 2370

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 298  ccacagacctcttgctgccc 317
            ||||||||||||||||||||
Sbjct: 1807 ccacagacctcttgctgccc 1826



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>ref|XM_937669.1| PREDICTED: Homo sapiens zinc finger and BTB domain containing 34
            (ZBTB34), mRNA
          Length = 6553

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 298  ccacagacctcttgctgccc 317
            ||||||||||||||||||||
Sbjct: 6006 ccacagacctcttgctgccc 6025



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>ref|XM_928961.1| PREDICTED: Homo sapiens zinc finger and BTB domain containing 34
            (ZBTB34), mRNA
          Length = 6843

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 298  ccacagacctcttgctgccc 317
            ||||||||||||||||||||
Sbjct: 6296 ccacagacctcttgctgccc 6315



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>emb|BX824164.1|CNS0A7RY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH27ZF02 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1105

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 228 tctttcatcgactgggagataaac 251
           ||||| ||||||||||||||||||
Sbjct: 933 tcttttatcgactgggagataaac 956



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>gb|AC104785.5| Homo sapiens BAC clone RP11-84C13 from 4, complete sequence
          Length = 112003

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   attctagttctgggtactat 149
             ||||||||||||||||||||
Sbjct: 25263 attctagttctgggtactat 25244



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>dbj|AK074274.1| Homo sapiens cDNA FLJ23694 fis, clone HEP10358
          Length = 2209

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 298  ccacagacctcttgctgccc 317
            ||||||||||||||||||||
Sbjct: 1664 ccacagacctcttgctgccc 1683



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>dbj|AK100085.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002O21, full
           insert sequence
          Length = 1188

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 294 aacaccacagacctcttgctgcccacca 321
           ||||||||| ||||||||||| ||||||
Sbjct: 899 aacaccacatacctcttgctgtccacca 872



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>dbj|AB082524.1| Homo sapiens mRNA for KIAA1993 protein
          Length = 6545

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 298  ccacagacctcttgctgccc 317
            ||||||||||||||||||||
Sbjct: 6013 ccacagacctcttgctgccc 6032


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,068,949
Number of Sequences: 3902068
Number of extensions: 3068949
Number of successful extensions: 101013
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100962
Number of HSP's gapped (non-prelim): 51
length of query: 326
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 304
effective length of database: 17,147,199,772
effective search space: 5212748730688
effective search space used: 5212748730688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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