ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28l18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC095032.3| Homo sapiens chromosome 1 clone RP11-153F1, compl... 42 0.67
2emb|AL359197.20| Human DNA sequence from clone RP11-498I18 on ch... 42 0.67
3emb|BX950207.15| Zebrafish DNA sequence from clone CH211-10H13 i... 42 0.67
4gb|AC165418.6| Mus musculus chromosome 7, clone RP23-148M16, com... 40 2.6
5gb|BC073063.1| Xenopus laevis hypothetical protein LOC443618, mR... 40 2.6
6emb|AL354978.20| Human DNA sequence from clone RP11-266I14 on ch... 40 2.6
7gb|AC116529.16| Mus musculus chromosome 8, clone RP24-380O18, co... 40 2.6
8gb|AC103769.2| Homo sapiens chromosome 8, clone RP11-110G21, com... 40 2.6
9gb|AC064807.7| Homo sapiens chromosome 8, clone RP11-546K22, com... 40 2.6
10gb|AC022832.13| Homo sapiens chromosome 8, clone RP11-145O15, co... 40 2.6
11gb|AC067932.9| Homo sapiens chromosome 8, clone RP11-78F5, compl... 40 2.6
12ref|XM_686056.1| PREDICTED: Danio rerio similar to death associa... 40 2.6
13emb|BX294131.7| Zebrafish DNA sequence from clone CH211-254O18, ... 40 2.6
14gb|BC090680.1| Danio rerio cDNA clone IMAGE:6908428 40 2.6
15gb|AC114589.30| Mus musculus chromosome 8, clone RP23-365O13, co... 40 2.6
16emb|BX510915.23| Zebrafish DNA sequence from clone DKEY-24M12 in... 40 2.6
17gb|AC149091.3| Mus musculus BAC clone RP23-49P22 from 7, complet... 40 2.6

>gb|AC095032.3| Homo sapiens chromosome 1 clone RP11-153F1, complete sequence
          Length = 157344

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 125    attatcttcataaatataaat 145
              |||||||||||||||||||||
Sbjct: 143171 attatcttcataaatataaat 143151



to top

>emb|AL359197.20| Human DNA sequence from clone RP11-498I18 on chromosome 1, complete
              sequence
          Length = 191686

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 121    ccacattatcttcataaatat 141
              |||||||||||||||||||||
Sbjct: 187254 ccacattatcttcataaatat 187274



to top

>emb|BX950207.15| Zebrafish DNA sequence from clone CH211-10H13 in linkage group 5,
              complete sequence
          Length = 129862

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 125    attatcttcataaatataaat 145
              |||||||||||||||||||||
Sbjct: 122134 attatcttcataaatataaat 122154



to top

>gb|AC165418.6| Mus musculus chromosome 7, clone RP23-148M16, complete sequence
          Length = 205525

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 53     aacctacatacaggcaaaaagaagaact 80
              |||| ||||||||| |||||||||||||
Sbjct: 103762 aacccacatacagggaaaaagaagaact 103735



to top

>gb|BC073063.1| Xenopus laevis hypothetical protein LOC443618, mRNA (cDNA clone
            IMAGE:5074625), partial cds
          Length = 2140

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 131  ttcataaatataaatggtaa 150
            ||||||||||||||||||||
Sbjct: 2073 ttcataaatataaatggtaa 2092



to top

>emb|AL354978.20| Human DNA sequence from clone RP11-266I14 on chromosome 1 Contains the
             3' end of a novel gene (DKFZp761D221), a novel gene
             (FLJ40873) a novel gene, the INSL5 gene for insulin-like 5
             and the 3' end of a novel gene (FLJ23129), complete
             sequence
          Length = 98450

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 122   cacattatcttcataaatataaat 145
             |||||||| |||||||||||||||
Sbjct: 20066 cacattatattcataaatataaat 20089



to top

>gb|AC116529.16| Mus musculus chromosome 8, clone RP24-380O18, complete sequence
          Length = 166863

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    caggcaaaaagaagaactgc 82
             ||||||||||||||||||||
Sbjct: 36314 caggcaaaaagaagaactgc 36333



to top

>gb|AC103769.2| Homo sapiens chromosome 8, clone RP11-110G21, complete sequence
          Length = 138097

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    catacaggcaaaaagaagaa 78
             ||||||||||||||||||||
Sbjct: 86196 catacaggcaaaaagaagaa 86215



to top

>gb|AC064807.7| Homo sapiens chromosome 8, clone RP11-546K22, complete sequence
          Length = 203270

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     catacaggcaaaaagaagaa 78
              ||||||||||||||||||||
Sbjct: 194383 catacaggcaaaaagaagaa 194364



to top

>gb|AC022832.13| Homo sapiens chromosome 8, clone RP11-145O15, complete sequence
          Length = 166236

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   atcttcataaatataaatgg 147
             ||||||||||||||||||||
Sbjct: 72698 atcttcataaatataaatgg 72679



to top

>gb|AC067932.9| Homo sapiens chromosome 8, clone RP11-78F5, complete sequence
          Length = 163777

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 59   catacaggcaaaaagaagaa 78
            ||||||||||||||||||||
Sbjct: 8746 catacaggcaaaaagaagaa 8765



to top

>ref|XM_686056.1| PREDICTED: Danio rerio similar to death associated protein kinase 1
            (LOC562681), mRNA
          Length = 1470

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   gaagagagcagcccatccaa 54
            ||||||||||||||||||||
Sbjct: 1348 gaagagagcagcccatccaa 1367



to top

>emb|BX294131.7| Zebrafish DNA sequence from clone CH211-254O18, complete sequence
          Length = 164141

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     gaagagagcagcccatccaa 54
              ||||||||||||||||||||
Sbjct: 101434 gaagagagcagcccatccaa 101415



to top

>gb|BC090680.1| Danio rerio cDNA clone IMAGE:6908428
          Length = 885

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 35  gaagagagcagcccatccaa 54
           ||||||||||||||||||||
Sbjct: 694 gaagagagcagcccatccaa 713



to top

>gb|AC114589.30| Mus musculus chromosome 8, clone RP23-365O13, complete sequence
          Length = 213866

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    caggcaaaaagaagaactgc 82
             ||||||||||||||||||||
Sbjct: 11370 caggcaaaaagaagaactgc 11351



to top

>emb|BX510915.23| Zebrafish DNA sequence from clone DKEY-24M12 in linkage group 21,
             complete sequence
          Length = 253718

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   ataaatataaatggtaacac 153
             ||||||||||||||||||||
Sbjct: 51197 ataaatataaatggtaacac 51216



to top

>gb|AC149091.3| Mus musculus BAC clone RP23-49P22 from 7, complete sequence
          Length = 240997

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 53     aacctacatacaggcaaaaagaagaact 80
              |||| ||||||||| |||||||||||||
Sbjct: 107821 aacccacatacagggaaaaagaagaact 107848


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,005,837
Number of Sequences: 3902068
Number of extensions: 2005837
Number of successful extensions: 139322
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 139279
Number of HSP's gapped (non-prelim): 43
length of query: 209
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 187
effective length of database: 17,147,199,772
effective search space: 3206526357364
effective search space used: 3206526357364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top