ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags28l17 |
|---|---|
| Clone Library Name | barley_pub |
>PSD3_DAUCA (Q06364) Probable 26S proteasome non-ATPase regulatory subunit 3| (26S proteasome subunit S3) (Nuclear antigen 21D7) Length = 489 Score = 249 bits (637), Expect = 3e-66 Identities = 125/160 (78%), Positives = 135/160 (84%) Frame = -1 Query: 605 RAVADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNPVA 426 R VADKFASTF+ADRTHNLIVRLRHNVIRTGLRNISISYSRISL D+A+KLRLD+ NPVA Sbjct: 330 RXVADKFASTFTADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVARKLRLDSPNPVA 389 Query: 425 DAECIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEAVK 246 DAE IV+KAIRDGAIDATIDHANGWMVSKETGD+YSTNEPQAAFNSRIAFCLNMHNEAV+ Sbjct: 390 DAESIVSKAIRDGAIDATIDHANGWMVSKETGDIYSTNEPQAAFNSRIAFCLNMHNEAVR 449 Query: 245 AMRFPPNSHXXXXXXXXXXXXXXXXXXXXKHMAEEDDDDF 126 A+RFP NSH KH+AEEDDD+F Sbjct: 450 ALRFPANSHKDKESAEKRRERQQQEQELAKHIAEEDDDEF 489
>PSD3_TOBAC (P93768) Probable 26S proteasome non-ATPase regulatory subunit 3| (26S proteasome subunit S3) (Nuclear antigen 21D7) Length = 488 Score = 244 bits (623), Expect = 1e-64 Identities = 122/160 (76%), Positives = 134/160 (83%) Frame = -1 Query: 605 RAVADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNPVA 426 R VA+KF+STFS+D T+NLIVRLRHNVIRTGLRNISISYSRISL D+AKKLRLD+ NPVA Sbjct: 329 RKVAEKFSSTFSSDGTNNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSPNPVA 388 Query: 425 DAECIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEAVK 246 DAE IV+KAIRDGAIDAT+DHANGWMVSKETGD+YSTNEPQ AFNSRIAFCLNMHNEAV+ Sbjct: 389 DAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQIAFNSRIAFCLNMHNEAVR 448 Query: 245 AMRFPPNSHXXXXXXXXXXXXXXXXXXXXKHMAEEDDDDF 126 A+RFPPNSH KH+AEEDDDDF Sbjct: 449 ALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 488
>PSD31_ARATH (Q9LNU4) Probable 26S proteasome non-ATPase regulatory subunit 3a| (26S proteasome subunit S3-a) Length = 488 Score = 237 bits (604), Expect = 2e-62 Identities = 120/160 (75%), Positives = 129/160 (80%) Frame = -1 Query: 605 RAVADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNPVA 426 R V +KF TF+ DRTHNLIVRLRHNVIRTGLRNISISYSRISL D+AKKLRL++ NPVA Sbjct: 329 RTVQEKFLDTFAQDRTHNLIVRLRHNVIRTGLRNISISYSRISLPDVAKKLRLNSENPVA 388 Query: 425 DAECIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEAVK 246 DAE IVAKAIRDGAIDATIDH NG MVSKETGD+YSTNEPQ AFNSRIAFCLNMHNEAV+ Sbjct: 389 DAESIVAKAIRDGAIDATIDHKNGCMVSKETGDIYSTNEPQTAFNSRIAFCLNMHNEAVR 448 Query: 245 AMRFPPNSHXXXXXXXXXXXXXXXXXXXXKHMAEEDDDDF 126 A+RFPPN+H KHMAEEDDDDF Sbjct: 449 ALRFPPNTHKEKESDEKRRERKQQEEELAKHMAEEDDDDF 488
>PSD32_ARATH (Q9LQR8) Probable 26S proteasome non-ATPase regulatory subunit 3b| (26S proteasome subunit S3-b) Length = 487 Score = 233 bits (595), Expect = 2e-61 Identities = 117/158 (74%), Positives = 129/158 (81%) Frame = -1 Query: 599 VADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNPVADA 420 + +KFA TF+ DRTHNLIVRLRHNVIRTGLRNISISYSRISL D+A+KLRL++ NPVADA Sbjct: 330 IQEKFAKTFAEDRTHNLIVRLRHNVIRTGLRNISISYSRISLQDVAQKLRLNSANPVADA 389 Query: 419 ECIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEAVKAM 240 E IVAKAIRDGAIDATIDH NG MVSKETGD+YSTNEPQ AFNSRIAFCLNMHNEAV+A+ Sbjct: 390 ESIVAKAIRDGAIDATIDHKNGCMVSKETGDIYSTNEPQTAFNSRIAFCLNMHNEAVRAL 449 Query: 239 RFPPNSHXXXXXXXXXXXXXXXXXXXXKHMAEEDDDDF 126 RFPPN+H K+MAEEDDDDF Sbjct: 450 RFPPNTHREKESEEKRREMKQQEEELAKYMAEEDDDDF 487
>PSD3_HUMAN (O43242) 26S proteasome non-ATPase regulatory subunit 3 (26S| proteasome regulatory subunit S3) (Proteasome subunit p58) Length = 534 Score = 164 bits (415), Expect = 2e-40 Identities = 89/159 (55%), Positives = 111/159 (69%), Gaps = 1/159 (0%) Frame = -1 Query: 599 VADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNPVADA 420 V D+F F AD T+ LI+RLRHNVI+TG+R IS+SYSRISLADIA+KL+LD+ DA Sbjct: 378 VLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPE---DA 434 Query: 419 ECIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEAVKAM 240 E IVAKAIRDG I+A+I+H G++ SKE D+YST EPQ AF+ RI+FCL++HN +VKAM Sbjct: 435 EFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAM 494 Query: 239 RFPPNSH-XXXXXXXXXXXXXXXXXXXXKHMAEEDDDDF 126 RFPP S+ K MAE+DDD F Sbjct: 495 RFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSF 533
>PSD3_MOUSE (P14685) 26S proteasome non-ATPase regulatory subunit 3 (26S| proteasome regulatory subunit S3) (Proteasome subunit p58) (Transplantation antigen P91A) (Tum-P91A antigen) Length = 530 Score = 162 bits (411), Expect = 5e-40 Identities = 88/159 (55%), Positives = 110/159 (69%), Gaps = 1/159 (0%) Frame = -1 Query: 599 VADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNPVADA 420 V D+F F D T+ LI+RLRHNVI+TG+R IS+SYSRISLADIA+KL+LD+ DA Sbjct: 374 VLDQFGEKFQTDGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPE---DA 430 Query: 419 ECIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEAVKAM 240 E IVAKAIRDG I+A+I+H G++ SKE D+YST EPQ AF+ RI+FCL++HN +VKAM Sbjct: 431 EFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAM 490 Query: 239 RFPPNSH-XXXXXXXXXXXXXXXXXXXXKHMAEEDDDDF 126 RFPP S+ K MAE+DDD F Sbjct: 491 RFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSF 529
>PSD3_ANOST (Q9U5Z8) Probable 26S proteasome non-ATPase regulatory subunit 3| (26S proteasome subunit S3) (Diphenol oxidase A2 component) (DOX-A2) Length = 500 Score = 157 bits (396), Expect = 3e-38 Identities = 84/159 (52%), Positives = 106/159 (66%), Gaps = 1/159 (0%) Frame = -1 Query: 599 VADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNPVADA 420 V + F F D T LI+RLRHNVI+T +R+I ++YSRIS DIA+KL LD+ DA Sbjct: 345 VLENFGEQFRQDHTFTLIIRLRHNVIKTAIRSIGLAYSRISPQDIARKLGLDSPE---DA 401 Query: 419 ECIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEAVKAM 240 E IVAKAIRDG IDAT+D G+M +KE+ D+YST EPQ AF+ RI+FCL++HN++VKAM Sbjct: 402 EFIVAKAIRDGVIDATLDPEKGYMRTKESTDIYSTREPQLAFHQRISFCLDLHNQSVKAM 461 Query: 239 RFPPNSH-XXXXXXXXXXXXXXXXXXXXKHMAEEDDDDF 126 R+PP S+ K MAEEDDDDF Sbjct: 462 RYPPKSYGKELESAEERREREQQDLELAKEMAEEDDDDF 500
>PSD3_DROME (P25161) Probable 26S proteasome non-ATPase regulatory subunit 3| (26S proteasome subunit S3) (Diphenol oxidase A2 component) (DOX-A2) Length = 494 Score = 152 bits (384), Expect = 7e-37 Identities = 81/159 (50%), Positives = 105/159 (66%), Gaps = 1/159 (0%) Frame = -1 Query: 599 VADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNPVADA 420 V ++ F D T LI+RLRHNVI+T +R+I +SYSRIS DIAK+L LD+ DA Sbjct: 339 VVSQYGPKFQLDHTFTLIIRLRHNVIKTAIRSIGLSYSRISPQDIAKRLMLDSAE---DA 395 Query: 419 ECIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEAVKAM 240 E IV+KAIRDG I+AT+D A +M SKE+ D+YST EPQ AF+ RI+FCLN+HN++VKAM Sbjct: 396 EFIVSKAIRDGVIEATLDPAQNFMRSKESTDIYSTREPQLAFHERISFCLNLHNQSVKAM 455 Query: 239 RFPPNSH-XXXXXXXXXXXXXXXXXXXXKHMAEEDDDDF 126 R+PP S+ K MAE+D+D F Sbjct: 456 RYPPKSYGKDLESAEERREREQQDLELAKEMAEDDEDGF 494
>PSD3_ANOGA (O61470) Probable 26S proteasome non-ATPase regulatory subunit 3| (26S proteasome subunit S3) (Diphenol oxidase A2 component) (DOX-A2) Length = 496 Score = 152 bits (383), Expect = 9e-37 Identities = 82/155 (52%), Positives = 103/155 (66%), Gaps = 1/155 (0%) Frame = -1 Query: 587 FASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNPVADAECIV 408 F F D T LI+RLRHNVI+T +R+I ++YSRIS DIA+KL LD+ DAE IV Sbjct: 345 FGEQFRQDHTFTLIIRLRHNVIKTAIRSIGLAYSRISPQDIARKLGLDSPE---DAEFIV 401 Query: 407 AKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEAVKAMRFPP 228 AKAIRDG I+AT+D G+M SKE+ D+YST EPQ AF+ RI+FCL++HN++VKAMR+PP Sbjct: 402 AKAIRDGVIEATLDPEKGYMRSKESTDIYSTREPQLAFHQRISFCLDLHNQSVKAMRYPP 461 Query: 227 NSH-XXXXXXXXXXXXXXXXXXXXKHMAEEDDDDF 126 S+ K MAEEDDD F Sbjct: 462 KSYGKELESAEERREREQQDLELAKEMAEEDDDGF 496
>RPN3_SCHPO (O42897) Probable 26S proteasome regulatory subunit rpn3| Length = 497 Score = 138 bits (348), Expect = 1e-32 Identities = 69/124 (55%), Positives = 90/124 (72%) Frame = -1 Query: 590 KFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNPVADAECI 411 K+ + F D + LI RLRH VI+TGLR IS+SYSRISL D+ KL LD+ AE I Sbjct: 344 KYEAEFRFDGLYTLICRLRHTVIKTGLRMISLSYSRISLRDVCIKLGLDSEE---SAEYI 400 Query: 410 VAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEAVKAMRFP 231 VAK IRDG IDA+IDH+N +M S E D+YST +PQ AF+ RI FCL +HN+++K+MR+P Sbjct: 401 VAKGIRDGVIDASIDHSNAFMASNEAMDIYSTEQPQQAFHERIQFCLALHNDSIKSMRYP 460 Query: 230 PNSH 219 ++H Sbjct: 461 MDAH 464
>PSD3_CAEEL (Q04908) 26S proteasome non-ATPase regulatory subunit 3 (26S| proteasome regulatory subunit rpn-3) Length = 504 Score = 134 bits (337), Expect = 2e-31 Identities = 76/160 (47%), Positives = 100/160 (62%), Gaps = 4/160 (2%) Frame = -1 Query: 593 DKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNPVADAEC 414 ++F + F AD T LIVRLR NVI+T ++ IS++YSRI + DIAKKL + + E Sbjct: 348 EQFKTQFEADDTLTLIVRLRQNVIKTAIKQISLAYSRIYIKDIAKKLYITNET---ETEY 404 Query: 413 IVAKAIRDGAIDATI--DHANG--WMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEAVK 246 IVAKAI DGAIDA I D +G +M S ET D+Y T+EPQA F++RI +CL +HN+AVK Sbjct: 405 IVAKAIADGAIDAVITSDVRDGPRYMQSSETADIYRTSEPQAHFDTRIRYCLELHNQAVK 464 Query: 245 AMRFPPNSHXXXXXXXXXXXXXXXXXXXXKHMAEEDDDDF 126 A+R+PP K +A+EDDDDF Sbjct: 465 ALRYPPKKKIAVETIEQAREREQQELEFAKELADEDDDDF 504
>RPN3_YEAST (P40016) 26S proteasome regulatory subunit RPN3| Length = 523 Score = 101 bits (252), Expect = 1e-21 Identities = 52/120 (43%), Positives = 79/120 (65%) Frame = -1 Query: 590 KFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNPVADAECI 411 K+ D T+ L VRLR NVI+TG+R IS++Y +ISL DI KL LD+ V E + Sbjct: 366 KYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTV---EYM 422 Query: 410 VAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEAVKAMRFP 231 V++AIRDG I+A I+H +G++ + E ++Y + +PQ F+ RI F +H+E + +MR+P Sbjct: 423 VSRAIRDGVIEAKINHEDGFIETTELLNIYDSEDPQQVFDERIKFANQLHDEYLVSMRYP 482
>MT_LYTPI (O02033) Metallothionein (MT) (LpMT1)| Length = 68 Score = 31.2 bits (69), Expect = 2.4 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Frame = -3 Query: 483 DLPC*YCEEAK--ARHWESCCRCGVHCSQGHKRWCY*CHHRPCKWLDG 346 D+ C C + K A CC G C +G + C C + CK DG Sbjct: 5 DVKCFCCRDGKECACGGGECCITGKCCKEGDRTCCGKCSNAACKCADG 52
>TNR16_CHICK (P18519) Tumor necrosis factor receptor superfamily member 16| precursor (Low-affinity nerve growth factor receptor) (NGF receptor) (Gp80-LNGFR) (p75 ICD) (Low affinity neurotrophin receptor p75NTR) Length = 416 Score = 31.2 bits (69), Expect = 2.4 Identities = 17/61 (27%), Positives = 22/61 (36%) Frame = -3 Query: 570 CRQDSQFDCEAPPQCHSNWTTQHQHFILADLPC*YCEEAKARHWESCCRCGVHCSQGHKR 391 CR CE +C + +F+ LPC CEE + E C H R Sbjct: 130 CRDSQDTVCE---ECPEGTFSDEANFVDPCLPCTICEENEVMVKECTATSDAECRDLHPR 186 Query: 390 W 388 W Sbjct: 187 W 187
>PEX5_DEBHA (Q6BM14) Peroxisomal targeting signal receptor (Peroxin-5) (PTS1| receptor) Length = 603 Score = 30.4 bits (67), Expect = 4.2 Identities = 16/51 (31%), Positives = 26/51 (50%) Frame = -1 Query: 392 DGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEAVKAM 240 + AI H N W+ + G+V + NE + A S + CL +H E +A+ Sbjct: 329 EAAIQRNEGHINAWL---KLGEVQTQNEKEIAGISALEKCLELHPENSEAL 376
>MTA_SPHGR (Q26497) Metallothionein-A (MTA) (Fragment)| Length = 67 Score = 29.3 bits (64), Expect = 9.3 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Frame = -3 Query: 483 DLPC*YCEEAKARHWES--CCRCGVHCSQGHKRWCY*CHHRPCKWLDG 346 D+ C C++ K + CC G C +G C C + CK DG Sbjct: 4 DVKCVCCQDGKECPCKGGECCITGSCCKEGDGLCCGKCSNAACKCADG 51
>PEX5_CANAL (O74711) Peroxisomal targeting signal receptor (Peroxin-5) (PTS1| receptor) Length = 592 Score = 29.3 bits (64), Expect = 9.3 Identities = 15/51 (29%), Positives = 27/51 (52%) Frame = -1 Query: 392 DGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEAVKAM 240 + AI +H + W+ + G+V + NE + A S + CL +H E +A+ Sbjct: 320 EAAIQRDENHVDAWL---KLGEVQTQNEKEIAGISALEKCLELHPENSEAL 367
>SUVH7_ARATH (Q9C5P1) Histone-lysine N-methyltransferase, H3 lysine-9 specific| SUVH7 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 7) (H3-K9-HMTase 7) (Suppressor of variegation 3-9 homolog protein 7) (Su(var)3-9 homolog protein 7) (Protein SET DOMAIN GR Length = 693 Score = 29.3 bits (64), Expect = 9.3 Identities = 13/37 (35%), Positives = 13/37 (35%) Frame = -3 Query: 537 PPQCHSNWTTQHQHFILADLPC*YCEEAKARHWESCC 427 P QCHS T HF L C C H C Sbjct: 437 PSQCHSGMMTHEFHFDRQSLGCQNCRHQPCMHQNCTC 473 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,284,642 Number of Sequences: 219361 Number of extensions: 1455272 Number of successful extensions: 3783 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3669 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3766 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
