| Clone Name | rbags28l03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT018214.1| Zea mays clone EL01N0561A03.c mRNA sequence Length = 1323 Score = 119 bits (60), Expect = 7e-24 Identities = 102/116 (87%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 ||||||||||||||||||||| ||||||||||| ||||||| || || || || ||||| Sbjct: 1047 tatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaatgcaatggc 988 Query: 338 gatagaaggcaccaccttcactgagttgggaacaagacccttgtacagagcaccaa 393 || || ||||||||||| |||||||| || ||||||||||||||||||||||||| Sbjct: 987 aattgagggcaccaccttgactgagttcggcacaagacccttgtacagagcaccaa 932 Score = 67.9 bits (34), Expect = 2e-08 Identities = 60/68 (88%), Gaps = 3/68 (4%) Strand = Plus / Minus Query: 134 acatgggctgagagggccttatgctgaatggagcctcggtcctattgtccttctactcgc 193 ||||||||||||||||||| ||||||||||||||| ||||| || |||||||| ||| Sbjct: 1179 acatgggctgagagggcctgatgctgaatggagccgcggtcata---cccttctacccgc 1123 Query: 194 cctgccta 201 |||||||| Sbjct: 1122 cctgccta 1115 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 54 gctttacagccaacttattacttt 77 ||||||||||| |||||||||||| Sbjct: 1270 gctttacagccgacttattacttt 1247
>ref|XM_475975.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1068 Score = 117 bits (59), Expect = 3e-23 Identities = 107/123 (86%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 |||||||||||||||||||||||| | | ||| |||||| || ||||| || || || Sbjct: 1059 tatcctcatctctactcctagaactttttgcacaaactcgtatgtcacgaatgcaatagc 1000 Query: 338 gatagaaggcaccaccttcactgagttgggaacaagacccttgtacagagcaccaaaacc 397 |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| ||| Sbjct: 999 gatagaaggcaccaccttcactgaattgggcacaagacccttgtacaaagcaccaacacc 940 Query: 398 ttc 400 ||| Sbjct: 939 ttc 937
>dbj|AK098854.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000H16, full insert sequence Length = 1616 Score = 117 bits (59), Expect = 3e-23 Identities = 107/123 (86%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 |||||||||||||||||||||||| | | ||| |||||| || ||||| || || || Sbjct: 1213 tatcctcatctctactcctagaactttttgcacaaactcgtatgtcacgaatgcaatagc 1154 Query: 338 gatagaaggcaccaccttcactgagttgggaacaagacccttgtacagagcaccaaaacc 397 |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| ||| Sbjct: 1153 gatagaaggcaccaccttcactgaattgggcacaagacccttgtacaaagcaccaacacc 1094 Query: 398 ttc 400 ||| Sbjct: 1093 ttc 1091 Score = 87.7 bits (44), Expect = 3e-14 Identities = 72/80 (90%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 111 ggaaccagtagtaggatatatcgacatgggctgagagggccttatgctgaat-ggagcct 169 |||| ||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| Sbjct: 1380 ggaaacagtagtaggatataccaacatgggctgagagggccttatgctgaatgggagcct 1321 Query: 170 cggtcctattgtccttctac 189 | || |||| ||||||||| Sbjct: 1320 cagtgctatgatccttctac 1301 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 24 agactttatgagtcaggcaaatgctttaatgctttacagccaacttatta 73 ||||||||||||| |||||||||| || |||||||||||||||||||||| Sbjct: 1463 agactttatgagttaggcaaatgc-ttcatgctttacagccaacttatta 1415
>dbj|AK062575.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C04, full insert sequence Length = 1630 Score = 117 bits (59), Expect = 3e-23 Identities = 107/123 (86%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 |||||||||||||||||||||||| | | ||| |||||| || ||||| || || || Sbjct: 1212 tatcctcatctctactcctagaactttttgcacaaactcgtatgtcacgaatgcaatagc 1153 Query: 338 gatagaaggcaccaccttcactgagttgggaacaagacccttgtacagagcaccaaaacc 397 |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| ||| Sbjct: 1152 gatagaaggcaccaccttcactgaattgggcacaagacccttgtacaaagcaccaacacc 1093 Query: 398 ttc 400 ||| Sbjct: 1092 ttc 1090 Score = 87.7 bits (44), Expect = 3e-14 Identities = 72/80 (90%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 111 ggaaccagtagtaggatatatcgacatgggctgagagggccttatgctgaat-ggagcct 169 |||| ||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| Sbjct: 1379 ggaaacagtagtaggatataccaacatgggctgagagggccttatgctgaatgggagcct 1320 Query: 170 cggtcctattgtccttctac 189 | || |||| ||||||||| Sbjct: 1319 cagtgctatgatccttctac 1300 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 24 agactttatgagtcaggcaaatgctttaatgctttacagccaacttatta 73 ||||||||||||| |||||||||| || |||||||||||||||||||||| Sbjct: 1462 agactttatgagttaggcaaatgc-ttcatgctttacagccaacttatta 1414
>gb|AY108334.1| Zea mays PCO146922 mRNA sequence Length = 1576 Score = 111 bits (56), Expect = 2e-21 Identities = 101/116 (87%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 ||||||||||||||||||||| ||||||||||| ||||||| || || || || ||||| Sbjct: 1167 tatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaatgcaatggc 1108 Query: 338 gatagaaggcaccaccttcactgagttgggaacaagacccttgtacagagcaccaa 393 || || ||||||||||| |||||||| || |||||||||||||| |||||||||| Sbjct: 1107 aattgagggcaccaccttgactgagttcggcacaagacccttgtagagagcaccaa 1052 Score = 67.9 bits (34), Expect = 2e-08 Identities = 60/68 (88%), Gaps = 3/68 (4%) Strand = Plus / Minus Query: 134 acatgggctgagagggccttatgctgaatggagcctcggtcctattgtccttctactcgc 193 ||||||||||||||||||| ||||||||||||||| ||||| || |||||||| ||| Sbjct: 1299 acatgggctgagagggcctgatgctgaatggagccgcggtcata---cccttctacccgc 1243 Query: 194 cctgccta 201 |||||||| Sbjct: 1242 cctgccta 1235 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 54 gctttacagccaacttattacttt 77 ||||||||||| |||||||||||| Sbjct: 1391 gctttacagccgacttattacttt 1368
>gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0009C07, complete sequence Length = 148731 Score = 87.7 bits (44), Expect = 3e-14 Identities = 72/80 (90%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 111 ggaaccagtagtaggatatatcgacatgggctgagagggccttatgctgaat-ggagcct 169 |||| ||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| Sbjct: 91162 ggaaacagtagtaggatataccaacatgggctgagagggccttatgctgaatgggagcct 91221 Query: 170 cggtcctattgtccttctac 189 | || |||| ||||||||| Sbjct: 91222 cagtgctatgatccttctac 91241 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 351 accttcactgagttgggaacaagacccttgtacagagcaccaaaaccttc 400 ||||||||||| ||||| |||||||||||||||| |||||||| |||||| Sbjct: 91502 accttcactgaattgggcacaagacccttgtacaaagcaccaacaccttc 91551 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 24 agactttatgagtcaggcaaatgctttaatgctttacagccaacttatta 73 ||||||||||||| |||||||||||| | ||||||||||||||||||||| Sbjct: 91079 agactttatgagttaggcaaatgcttca-tgctttacagccaacttatta 91127 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 |||||||||||||||||||||||| | | ||| |||||| || ||||| || || || Sbjct: 91329 tatcctcatctctactcctagaactttttgcacaaactcgtatgtcacgaatgcaatagc 91388 Query: 338 gatagaaggcaccacct 354 ||||||||||||||||| Sbjct: 91389 gatagaaggcaccacct 91405
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 87.7 bits (44), Expect = 3e-14 Identities = 72/80 (90%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 111 ggaaccagtagtaggatatatcgacatgggctgagagggccttatgctgaat-ggagcct 169 |||| ||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| Sbjct: 28936869 ggaaacagtagtaggatataccaacatgggctgagagggccttatgctgaatgggagcct 28936928 Query: 170 cggtcctattgtccttctac 189 | || |||| ||||||||| Sbjct: 28936929 cagtgctatgatccttctac 28936948 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 351 accttcactgagttgggaacaagacccttgtacagagcaccaaaaccttc 400 ||||||||||| ||||| |||||||||||||||| |||||||| |||||| Sbjct: 28937209 accttcactgaattgggcacaagacccttgtacaaagcaccaacaccttc 28937258 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 24 agactttatgagtcaggcaaatgctttaatgctttacagccaacttatta 73 ||||||||||||| |||||||||||| | ||||||||||||||||||||| Sbjct: 28936786 agactttatgagttaggcaaatgcttca-tgctttacagccaacttatta 28936834 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 |||||||||||||||||||||||| | | ||| |||||| || ||||| || || || Sbjct: 28937036 tatcctcatctctactcctagaactttttgcacaaactcgtatgtcacgaatgcaatagc 28937095 Query: 338 gatagaaggcaccacct 354 ||||||||||||||||| Sbjct: 28937096 gatagaaggcaccacct 28937112
>gb|DQ427289.1| Sorghum propinquum locus CDO0202 genomic sequence Length = 575 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 ||||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||| Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194 Query: 338 gatagaaggcaccacct 354 || || |||||||||| Sbjct: 193 aattgagggcaccacct 177 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 28 tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77 ||||||||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450
>gb|DQ427288.1| Sorghum bicolor voucher PI585454 locus CDO0202 genomic sequence Length = 575 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 ||||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||| Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194 Query: 338 gatagaaggcaccacct 354 || || |||||||||| Sbjct: 193 aattgagggcaccacct 177 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 28 tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77 ||||||||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450
>gb|DQ427287.1| Sorghum bicolor voucher PI267539 locus CDO0202 genomic sequence Length = 575 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 ||||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||| Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194 Query: 338 gatagaaggcaccacct 354 || || |||||||||| Sbjct: 193 aattgagggcaccacct 177 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 28 tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77 ||||||||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450
>gb|DQ427286.1| Sorghum bicolor voucher PI267408 locus CDO0202 genomic sequence Length = 575 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 ||||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||| Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194 Query: 338 gatagaaggcaccacct 354 || || |||||||||| Sbjct: 193 aattgagggcaccacct 177 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 28 tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77 ||||||||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450
>gb|DQ427285.1| Sorghum bicolor voucher PI221607 locus CDO0202 genomic sequence Length = 575 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 ||||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||| Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194 Query: 338 gatagaaggcaccacct 354 || || |||||||||| Sbjct: 193 aattgagggcaccacct 177 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 28 tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77 ||||||||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450
>gb|DQ427284.1| Sorghum bicolor voucher PI152702 locus CDO0202 genomic sequence Length = 575 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 ||||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||| Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194 Query: 338 gatagaaggcaccacct 354 || || |||||||||| Sbjct: 193 aattgagggcaccacct 177 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 28 tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77 ||||||||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450
>gb|DQ427283.1| Sorghum bicolor voucher NSL92371 locus CDO0202 genomic sequence Length = 575 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 ||||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||| Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194 Query: 338 gatagaaggcaccacct 354 || || |||||||||| Sbjct: 193 aattgagggcaccacct 177 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 28 tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77 ||||||||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450
>gb|DQ427282.1| Sorghum bicolor voucher NSL87902 locus CDO0202 genomic sequence Length = 575 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 ||||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||| Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194 Query: 338 gatagaaggcaccacct 354 || || |||||||||| Sbjct: 193 aattgagggcaccacct 177 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 28 tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77 ||||||||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450
>gb|DQ427281.1| Sorghum bicolor voucher NSL87666 locus CDO0202 genomic sequence Length = 575 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 ||||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||| Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194 Query: 338 gatagaaggcaccacct 354 || || |||||||||| Sbjct: 193 aattgagggcaccacct 177 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 28 tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77 ||||||||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450
>gb|DQ427280.1| Sorghum bicolor voucher NSL77217 locus CDO0202 genomic sequence Length = 575 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 ||||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||| Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194 Query: 338 gatagaaggcaccacct 354 || || |||||||||| Sbjct: 193 aattgagggcaccacct 177 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 28 tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77 ||||||||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450
>gb|DQ427279.1| Sorghum bicolor voucher NSL77034 locus CDO0202 genomic sequence Length = 575 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 ||||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||| Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194 Query: 338 gatagaaggcaccacct 354 || || |||||||||| Sbjct: 193 aattgagggcaccacct 177 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 28 tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77 ||||||||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450
>gb|DQ427278.1| Sorghum bicolor voucher NSL56174 locus CDO0202 genomic sequence Length = 575 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 ||||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||| Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194 Query: 338 gatagaaggcaccacct 354 || || |||||||||| Sbjct: 193 aattgagggcaccacct 177 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 28 tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77 ||||||||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450
>gb|DQ427277.1| Sorghum bicolor voucher NSL56003 locus CDO0202 genomic sequence Length = 575 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 ||||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||| Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194 Query: 338 gatagaaggcaccacct 354 || || |||||||||| Sbjct: 193 aattgagggcaccacct 177 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 28 tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77 ||||||||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450
>gb|DQ427276.1| Sorghum bicolor voucher NSL55243 locus CDO0202 genomic sequence Length = 575 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 ||||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||| Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194 Query: 338 gatagaaggcaccacct 354 || || |||||||||| Sbjct: 193 aattgagggcaccacct 177 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 28 tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77 ||||||||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450
>gb|DQ427275.1| Sorghum bicolor voucher NSL51365 locus CDO0202 genomic sequence Length = 575 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 ||||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||| Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194 Query: 338 gatagaaggcaccacct 354 || || |||||||||| Sbjct: 193 aattgagggcaccacct 177 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 28 tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77 ||||||||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450
>gb|DQ427274.1| Sorghum bicolor voucher NSL51030 locus CDO0202 genomic sequence Length = 575 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 ||||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||| Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194 Query: 338 gatagaaggcaccacct 354 || || |||||||||| Sbjct: 193 aattgagggcaccacct 177 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 28 tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77 ||||||||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450
>gb|DQ427273.1| Sorghum bicolor voucher NSL50875 locus CDO0202 genomic sequence Length = 575 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 ||||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||| Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194 Query: 338 gatagaaggcaccacct 354 || || |||||||||| Sbjct: 193 aattgagggcaccacct 177 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 28 tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77 ||||||||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450
>gb|DQ427272.1| Sorghum bicolor voucher BTx623 locus CDO0202 genomic sequence Length = 575 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337 ||||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||| Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194 Query: 338 gatagaaggcaccacct 354 || || |||||||||| Sbjct: 193 aattgagggcaccacct 177 Score = 67.9 bits (34), Expect = 2e-08 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 28 tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77 ||||||||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450
>ref|XM_645541.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (207.t00008) partial mRNA Length = 2520 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 219 aaacacctacaaaaatagaagttgat 244 ||||||| |||||||||||||||||| Sbjct: 443 aaacaccaacaaaaatagaagttgat 468
>emb|AL606513.3| Mouse DNA sequence from clone RP23-277B9 on chromosome 13 Contains the the V1ri5, V1rh14, V1ri10, V1ri2, V1rh5 and V1rh6 genes for vomeronasal 1 receptor I5, I14, I10, I2, H5 and H6, two V1rh and two V1ri pseudogenes and an ATP-binding cassette sub-family F (GCN20) member 2 (Abcf2) pseudogene, complete sequence Length = 172243 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 276 tctatcctcatctctactccta 297 |||||||||||||||||||||| Sbjct: 73112 tctatcctcatctctactccta 73091
>emb|CT033771.1| Medicago truncatula chromosome 5 clone mth2-15i14, COMPLETE SEQUENCE Length = 116146 Score = 42.1 bits (21), Expect = 1.4 Identities = 60/73 (82%) Strand = Plus / Minus Query: 282 ctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggcgata 341 ||||| || ||||||||||||||||| || |||||| || ||||| || ||||| || Sbjct: 103269 ctcatttcaactcctagaacatccttgaccatctcgtatgtcacgaaggcaatggctatg 103210 Query: 342 gaaggcaccacct 354 ||||| ||||||| Sbjct: 103209 gaagggaccacct 103197
>ref|XM_850243.1| PREDICTED: Canis familiaris similar to chromosome 14 open reading frame 68 (LOC612516), mRNA Length = 1167 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 cacggcctcgtacgtgacgaa 328 ||||||||||||||||||||| Sbjct: 1137 cacggcctcgtacgtgacgaa 1117
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 ttccgaagcgagagtgcggc 95 |||||||||||||||||||| Sbjct: 5007728 ttccgaagcgagagtgcggc 5007709
>gb|AY453362.1| Uncultured bacterium clone C57 dissimilatory membrane-bound nitrate reductase (narG) gene, partial cds Length = 662 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 310 cggcctcgtacgtgacgaacgcgatggc 337 |||||||||||||| |||||||| |||| Sbjct: 323 cggcctcgtacgtggcgaacgcgctggc 350
>emb|AL669841.7| Human DNA sequence from clone RP11-490E15 on chromosome 10 Contains part of the gene for a novel protein (KIAA0934) and a novel gene, complete sequence Length = 29877 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 gcaccaccttcactgagttg 365 |||||||||||||||||||| Sbjct: 14324 gcaccaccttcactgagttg 14305 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,728,687 Number of Sequences: 3902068 Number of extensions: 2728687 Number of successful extensions: 45535 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 45382 Number of HSP's gapped (non-prelim): 130 length of query: 402 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 380 effective length of database: 17,147,199,772 effective search space: 6515935913360 effective search space used: 6515935913360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)