ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28l03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT018214.1| Zea mays clone EL01N0561A03.c mRNA sequence 119 7e-24
2ref|XM_475975.1| Oryza sativa (japonica cultivar-group), predic... 117 3e-23
3dbj|AK098854.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
4dbj|AK062575.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
5gb|AY108334.1| Zea mays PCO146922 mRNA sequence 111 2e-21
6gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome... 88 3e-14
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
8gb|DQ427289.1| Sorghum propinquum locus CDO0202 genomic sequence 74 4e-10
9gb|DQ427288.1| Sorghum bicolor voucher PI585454 locus CDO0202 ge... 74 4e-10
10gb|DQ427287.1| Sorghum bicolor voucher PI267539 locus CDO0202 ge... 74 4e-10
11gb|DQ427286.1| Sorghum bicolor voucher PI267408 locus CDO0202 ge... 74 4e-10
12gb|DQ427285.1| Sorghum bicolor voucher PI221607 locus CDO0202 ge... 74 4e-10
13gb|DQ427284.1| Sorghum bicolor voucher PI152702 locus CDO0202 ge... 74 4e-10
14gb|DQ427283.1| Sorghum bicolor voucher NSL92371 locus CDO0202 ge... 74 4e-10
15gb|DQ427282.1| Sorghum bicolor voucher NSL87902 locus CDO0202 ge... 74 4e-10
16gb|DQ427281.1| Sorghum bicolor voucher NSL87666 locus CDO0202 ge... 74 4e-10
17gb|DQ427280.1| Sorghum bicolor voucher NSL77217 locus CDO0202 ge... 74 4e-10
18gb|DQ427279.1| Sorghum bicolor voucher NSL77034 locus CDO0202 ge... 74 4e-10
19gb|DQ427278.1| Sorghum bicolor voucher NSL56174 locus CDO0202 ge... 74 4e-10
20gb|DQ427277.1| Sorghum bicolor voucher NSL56003 locus CDO0202 ge... 74 4e-10
21gb|DQ427276.1| Sorghum bicolor voucher NSL55243 locus CDO0202 ge... 74 4e-10
22gb|DQ427275.1| Sorghum bicolor voucher NSL51365 locus CDO0202 ge... 74 4e-10
23gb|DQ427274.1| Sorghum bicolor voucher NSL51030 locus CDO0202 ge... 74 4e-10
24gb|DQ427273.1| Sorghum bicolor voucher NSL50875 locus CDO0202 ge... 74 4e-10
25gb|DQ427272.1| Sorghum bicolor voucher BTx623 locus CDO0202 geno... 74 4e-10
26ref|XM_645541.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 44 0.34
27emb|AL606513.3| Mouse DNA sequence from clone RP23-277B9 on chro... 44 0.34
28emb|CT033771.1| Medicago truncatula chromosome 5 clone mth2-15i1... 42 1.4
29ref|XM_850243.1| PREDICTED: Canis familiaris similar to chromoso... 42 1.4
30gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 5.4
31gb|AY453362.1| Uncultured bacterium clone C57 dissimilatory memb... 40 5.4
32emb|AL669841.7| Human DNA sequence from clone RP11-490E15 on chr... 40 5.4

>gb|BT018214.1| Zea mays clone EL01N0561A03.c mRNA sequence
          Length = 1323

 Score =  119 bits (60), Expect = 7e-24
 Identities = 102/116 (87%)
 Strand = Plus / Minus

                                                                        
Query: 278  tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
            ||||||||||||||||||||| |||||||||||  ||||||| || || || || |||||
Sbjct: 1047 tatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaatgcaatggc 988

                                                                    
Query: 338  gatagaaggcaccaccttcactgagttgggaacaagacccttgtacagagcaccaa 393
             || || ||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct: 987  aattgagggcaccaccttgactgagttcggcacaagacccttgtacagagcaccaa 932



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 60/68 (88%), Gaps = 3/68 (4%)
 Strand = Plus / Minus

                                                                        
Query: 134  acatgggctgagagggccttatgctgaatggagcctcggtcctattgtccttctactcgc 193
            ||||||||||||||||||| ||||||||||||||| ||||| ||    |||||||| |||
Sbjct: 1179 acatgggctgagagggcctgatgctgaatggagccgcggtcata---cccttctacccgc 1123

                    
Query: 194  cctgccta 201
            ||||||||
Sbjct: 1122 cctgccta 1115



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 54   gctttacagccaacttattacttt 77
            ||||||||||| ||||||||||||
Sbjct: 1270 gctttacagccgacttattacttt 1247



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>ref|XM_475975.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1068

 Score =  117 bits (59), Expect = 3e-23
 Identities = 107/123 (86%)
 Strand = Plus / Minus

                                                                        
Query: 278  tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
            |||||||||||||||||||||||| |  | |||   |||||| || ||||| || || ||
Sbjct: 1059 tatcctcatctctactcctagaactttttgcacaaactcgtatgtcacgaatgcaatagc 1000

                                                                        
Query: 338  gatagaaggcaccaccttcactgagttgggaacaagacccttgtacagagcaccaaaacc 397
            |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| |||
Sbjct: 999  gatagaaggcaccaccttcactgaattgggcacaagacccttgtacaaagcaccaacacc 940

               
Query: 398  ttc 400
            |||
Sbjct: 939  ttc 937



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>dbj|AK098854.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000H16, full
            insert sequence
          Length = 1616

 Score =  117 bits (59), Expect = 3e-23
 Identities = 107/123 (86%)
 Strand = Plus / Minus

                                                                        
Query: 278  tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
            |||||||||||||||||||||||| |  | |||   |||||| || ||||| || || ||
Sbjct: 1213 tatcctcatctctactcctagaactttttgcacaaactcgtatgtcacgaatgcaatagc 1154

                                                                        
Query: 338  gatagaaggcaccaccttcactgagttgggaacaagacccttgtacagagcaccaaaacc 397
            |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| |||
Sbjct: 1153 gatagaaggcaccaccttcactgaattgggcacaagacccttgtacaaagcaccaacacc 1094

               
Query: 398  ttc 400
            |||
Sbjct: 1093 ttc 1091



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 72/80 (90%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                        
Query: 111  ggaaccagtagtaggatatatcgacatgggctgagagggccttatgctgaat-ggagcct 169
            |||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct: 1380 ggaaacagtagtaggatataccaacatgggctgagagggccttatgctgaatgggagcct 1321

                                
Query: 170  cggtcctattgtccttctac 189
            | || ||||  |||||||||
Sbjct: 1320 cagtgctatgatccttctac 1301



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                              
Query: 24   agactttatgagtcaggcaaatgctttaatgctttacagccaacttatta 73
            ||||||||||||| |||||||||| || ||||||||||||||||||||||
Sbjct: 1463 agactttatgagttaggcaaatgc-ttcatgctttacagccaacttatta 1415



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>dbj|AK062575.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C04, full
            insert sequence
          Length = 1630

 Score =  117 bits (59), Expect = 3e-23
 Identities = 107/123 (86%)
 Strand = Plus / Minus

                                                                        
Query: 278  tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
            |||||||||||||||||||||||| |  | |||   |||||| || ||||| || || ||
Sbjct: 1212 tatcctcatctctactcctagaactttttgcacaaactcgtatgtcacgaatgcaatagc 1153

                                                                        
Query: 338  gatagaaggcaccaccttcactgagttgggaacaagacccttgtacagagcaccaaaacc 397
            |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| |||
Sbjct: 1152 gatagaaggcaccaccttcactgaattgggcacaagacccttgtacaaagcaccaacacc 1093

               
Query: 398  ttc 400
            |||
Sbjct: 1092 ttc 1090



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 72/80 (90%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                        
Query: 111  ggaaccagtagtaggatatatcgacatgggctgagagggccttatgctgaat-ggagcct 169
            |||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct: 1379 ggaaacagtagtaggatataccaacatgggctgagagggccttatgctgaatgggagcct 1320

                                
Query: 170  cggtcctattgtccttctac 189
            | || ||||  |||||||||
Sbjct: 1319 cagtgctatgatccttctac 1300



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                              
Query: 24   agactttatgagtcaggcaaatgctttaatgctttacagccaacttatta 73
            ||||||||||||| |||||||||| || ||||||||||||||||||||||
Sbjct: 1462 agactttatgagttaggcaaatgc-ttcatgctttacagccaacttatta 1414



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>gb|AY108334.1| Zea mays PCO146922 mRNA sequence
          Length = 1576

 Score =  111 bits (56), Expect = 2e-21
 Identities = 101/116 (87%)
 Strand = Plus / Minus

                                                                        
Query: 278  tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
            ||||||||||||||||||||| |||||||||||  ||||||| || || || || |||||
Sbjct: 1167 tatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaatgcaatggc 1108

                                                                    
Query: 338  gatagaaggcaccaccttcactgagttgggaacaagacccttgtacagagcaccaa 393
             || || ||||||||||| |||||||| || |||||||||||||| ||||||||||
Sbjct: 1107 aattgagggcaccaccttgactgagttcggcacaagacccttgtagagagcaccaa 1052



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 60/68 (88%), Gaps = 3/68 (4%)
 Strand = Plus / Minus

                                                                        
Query: 134  acatgggctgagagggccttatgctgaatggagcctcggtcctattgtccttctactcgc 193
            ||||||||||||||||||| ||||||||||||||| ||||| ||    |||||||| |||
Sbjct: 1299 acatgggctgagagggcctgatgctgaatggagccgcggtcata---cccttctacccgc 1243

                    
Query: 194  cctgccta 201
            ||||||||
Sbjct: 1242 cctgccta 1235



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 54   gctttacagccaacttattacttt 77
            ||||||||||| ||||||||||||
Sbjct: 1391 gctttacagccgacttattacttt 1368



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>gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0009C07, complete sequence
          Length = 148731

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 72/80 (90%), Gaps = 1/80 (1%)
 Strand = Plus / Plus

                                                                         
Query: 111   ggaaccagtagtaggatatatcgacatgggctgagagggccttatgctgaat-ggagcct 169
             |||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct: 91162 ggaaacagtagtaggatataccaacatgggctgagagggccttatgctgaatgggagcct 91221

                                 
Query: 170   cggtcctattgtccttctac 189
             | || ||||  |||||||||
Sbjct: 91222 cagtgctatgatccttctac 91241



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                               
Query: 351   accttcactgagttgggaacaagacccttgtacagagcaccaaaaccttc 400
             ||||||||||| ||||| |||||||||||||||| |||||||| ||||||
Sbjct: 91502 accttcactgaattgggcacaagacccttgtacaaagcaccaacaccttc 91551



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                               
Query: 24    agactttatgagtcaggcaaatgctttaatgctttacagccaacttatta 73
             ||||||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct: 91079 agactttatgagttaggcaaatgcttca-tgctttacagccaacttatta 91127



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                         
Query: 278   tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
             |||||||||||||||||||||||| |  | |||   |||||| || ||||| || || ||
Sbjct: 91329 tatcctcatctctactcctagaactttttgcacaaactcgtatgtcacgaatgcaatagc 91388

                              
Query: 338   gatagaaggcaccacct 354
             |||||||||||||||||
Sbjct: 91389 gatagaaggcaccacct 91405



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 72/80 (90%), Gaps = 1/80 (1%)
 Strand = Plus / Plus

                                                                            
Query: 111      ggaaccagtagtaggatatatcgacatgggctgagagggccttatgctgaat-ggagcct 169
                |||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct: 28936869 ggaaacagtagtaggatataccaacatgggctgagagggccttatgctgaatgggagcct 28936928

                                    
Query: 170      cggtcctattgtccttctac 189
                | || ||||  |||||||||
Sbjct: 28936929 cagtgctatgatccttctac 28936948



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                                  
Query: 351      accttcactgagttgggaacaagacccttgtacagagcaccaaaaccttc 400
                ||||||||||| ||||| |||||||||||||||| |||||||| ||||||
Sbjct: 28937209 accttcactgaattgggcacaagacccttgtacaaagcaccaacaccttc 28937258



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                                  
Query: 24       agactttatgagtcaggcaaatgctttaatgctttacagccaacttatta 73
                ||||||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct: 28936786 agactttatgagttaggcaaatgcttca-tgctttacagccaacttatta 28936834



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                            
Query: 278      tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
                |||||||||||||||||||||||| |  | |||   |||||| || ||||| || || ||
Sbjct: 28937036 tatcctcatctctactcctagaactttttgcacaaactcgtatgtcacgaatgcaatagc 28937095

                                 
Query: 338      gatagaaggcaccacct 354
                |||||||||||||||||
Sbjct: 28937096 gatagaaggcaccacct 28937112



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>gb|DQ427289.1| Sorghum propinquum locus CDO0202 genomic sequence
          Length = 575

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
           ||||||||||||||||||||| |||||||||||  ||||||| ||||| || || |||||
Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194

                            
Query: 338 gatagaaggcaccacct 354
            || || ||||||||||
Sbjct: 193 aattgagggcaccacct 177



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 28  tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77
           ||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450



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>gb|DQ427288.1| Sorghum bicolor voucher PI585454 locus CDO0202 genomic sequence
          Length = 575

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
           ||||||||||||||||||||| |||||||||||  ||||||| ||||| || || |||||
Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194

                            
Query: 338 gatagaaggcaccacct 354
            || || ||||||||||
Sbjct: 193 aattgagggcaccacct 177



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 28  tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77
           ||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450



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>gb|DQ427287.1| Sorghum bicolor voucher PI267539 locus CDO0202 genomic sequence
          Length = 575

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
           ||||||||||||||||||||| |||||||||||  ||||||| ||||| || || |||||
Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194

                            
Query: 338 gatagaaggcaccacct 354
            || || ||||||||||
Sbjct: 193 aattgagggcaccacct 177



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 28  tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77
           ||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450



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>gb|DQ427286.1| Sorghum bicolor voucher PI267408 locus CDO0202 genomic sequence
          Length = 575

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
           ||||||||||||||||||||| |||||||||||  ||||||| ||||| || || |||||
Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194

                            
Query: 338 gatagaaggcaccacct 354
            || || ||||||||||
Sbjct: 193 aattgagggcaccacct 177



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 28  tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77
           ||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450



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>gb|DQ427285.1| Sorghum bicolor voucher PI221607 locus CDO0202 genomic sequence
          Length = 575

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
           ||||||||||||||||||||| |||||||||||  ||||||| ||||| || || |||||
Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194

                            
Query: 338 gatagaaggcaccacct 354
            || || ||||||||||
Sbjct: 193 aattgagggcaccacct 177



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 28  tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77
           ||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450



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>gb|DQ427284.1| Sorghum bicolor voucher PI152702 locus CDO0202 genomic sequence
          Length = 575

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
           ||||||||||||||||||||| |||||||||||  ||||||| ||||| || || |||||
Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194

                            
Query: 338 gatagaaggcaccacct 354
            || || ||||||||||
Sbjct: 193 aattgagggcaccacct 177



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 28  tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77
           ||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450



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>gb|DQ427283.1| Sorghum bicolor voucher NSL92371 locus CDO0202 genomic sequence
          Length = 575

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
           ||||||||||||||||||||| |||||||||||  ||||||| ||||| || || |||||
Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194

                            
Query: 338 gatagaaggcaccacct 354
            || || ||||||||||
Sbjct: 193 aattgagggcaccacct 177



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 28  tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77
           ||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450



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>gb|DQ427282.1| Sorghum bicolor voucher NSL87902 locus CDO0202 genomic sequence
          Length = 575

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
           ||||||||||||||||||||| |||||||||||  ||||||| ||||| || || |||||
Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194

                            
Query: 338 gatagaaggcaccacct 354
            || || ||||||||||
Sbjct: 193 aattgagggcaccacct 177



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 28  tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77
           ||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450



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>gb|DQ427281.1| Sorghum bicolor voucher NSL87666 locus CDO0202 genomic sequence
          Length = 575

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
           ||||||||||||||||||||| |||||||||||  ||||||| ||||| || || |||||
Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194

                            
Query: 338 gatagaaggcaccacct 354
            || || ||||||||||
Sbjct: 193 aattgagggcaccacct 177



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 28  tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77
           ||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450



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>gb|DQ427280.1| Sorghum bicolor voucher NSL77217 locus CDO0202 genomic sequence
          Length = 575

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
           ||||||||||||||||||||| |||||||||||  ||||||| ||||| || || |||||
Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194

                            
Query: 338 gatagaaggcaccacct 354
            || || ||||||||||
Sbjct: 193 aattgagggcaccacct 177



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 28  tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77
           ||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450



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>gb|DQ427279.1| Sorghum bicolor voucher NSL77034 locus CDO0202 genomic sequence
          Length = 575

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
           ||||||||||||||||||||| |||||||||||  ||||||| ||||| || || |||||
Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194

                            
Query: 338 gatagaaggcaccacct 354
            || || ||||||||||
Sbjct: 193 aattgagggcaccacct 177



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 28  tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77
           ||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450



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>gb|DQ427278.1| Sorghum bicolor voucher NSL56174 locus CDO0202 genomic sequence
          Length = 575

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
           ||||||||||||||||||||| |||||||||||  ||||||| ||||| || || |||||
Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194

                            
Query: 338 gatagaaggcaccacct 354
            || || ||||||||||
Sbjct: 193 aattgagggcaccacct 177



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 28  tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77
           ||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450



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>gb|DQ427277.1| Sorghum bicolor voucher NSL56003 locus CDO0202 genomic sequence
          Length = 575

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
           ||||||||||||||||||||| |||||||||||  ||||||| ||||| || || |||||
Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194

                            
Query: 338 gatagaaggcaccacct 354
            || || ||||||||||
Sbjct: 193 aattgagggcaccacct 177



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 28  tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77
           ||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450



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>gb|DQ427276.1| Sorghum bicolor voucher NSL55243 locus CDO0202 genomic sequence
          Length = 575

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
           ||||||||||||||||||||| |||||||||||  ||||||| ||||| || || |||||
Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194

                            
Query: 338 gatagaaggcaccacct 354
            || || ||||||||||
Sbjct: 193 aattgagggcaccacct 177



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 28  tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77
           ||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450



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>gb|DQ427275.1| Sorghum bicolor voucher NSL51365 locus CDO0202 genomic sequence
          Length = 575

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
           ||||||||||||||||||||| |||||||||||  ||||||| ||||| || || |||||
Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194

                            
Query: 338 gatagaaggcaccacct 354
            || || ||||||||||
Sbjct: 193 aattgagggcaccacct 177



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 28  tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77
           ||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450



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>gb|DQ427274.1| Sorghum bicolor voucher NSL51030 locus CDO0202 genomic sequence
          Length = 575

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
           ||||||||||||||||||||| |||||||||||  ||||||| ||||| || || |||||
Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194

                            
Query: 338 gatagaaggcaccacct 354
            || || ||||||||||
Sbjct: 193 aattgagggcaccacct 177



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 28  tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77
           ||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450



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>gb|DQ427273.1| Sorghum bicolor voucher NSL50875 locus CDO0202 genomic sequence
          Length = 575

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
           ||||||||||||||||||||| |||||||||||  ||||||| ||||| || || |||||
Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194

                            
Query: 338 gatagaaggcaccacct 354
            || || ||||||||||
Sbjct: 193 aattgagggcaccacct 177



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 28  tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77
           ||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450



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>gb|DQ427272.1| Sorghum bicolor voucher BTx623 locus CDO0202 genomic sequence
          Length = 575

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 278 tatcctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggc 337
           ||||||||||||||||||||| |||||||||||  ||||||| ||||| || || |||||
Sbjct: 253 tatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaatgcaatggc 194

                            
Query: 338 gatagaaggcaccacct 354
            || || ||||||||||
Sbjct: 193 aattgagggcaccacct 177



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 28  tttatgagtcaggcaaatgctttaatgctttacagccaacttattacttt 77
           ||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct: 498 tttatgagttaggcaaatgcttaaa-gctttacagccaacttattacttt 450



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>ref|XM_645541.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (207.t00008)
           partial mRNA
          Length = 2520

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 219 aaacacctacaaaaatagaagttgat 244
           ||||||| ||||||||||||||||||
Sbjct: 443 aaacaccaacaaaaatagaagttgat 468



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>emb|AL606513.3| Mouse DNA sequence from clone RP23-277B9 on chromosome 13 Contains the
             the V1ri5, V1rh14, V1ri10, V1ri2, V1rh5 and V1rh6 genes
             for vomeronasal 1 receptor I5, I14, I10, I2, H5 and H6,
             two V1rh and two V1ri pseudogenes and an ATP-binding
             cassette sub-family F (GCN20) member 2 (Abcf2) pseudogene,
             complete sequence
          Length = 172243

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 276   tctatcctcatctctactccta 297
             ||||||||||||||||||||||
Sbjct: 73112 tctatcctcatctctactccta 73091



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>emb|CT033771.1| Medicago truncatula chromosome 5 clone mth2-15i14, COMPLETE SEQUENCE
          Length = 116146

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 60/73 (82%)
 Strand = Plus / Minus

                                                                          
Query: 282    ctcatctctactcctagaacatccttcacggcctcgtacgtgacgaacgcgatggcgata 341
              ||||| || ||||||||||||||||| ||   |||||| || ||||| || ||||| || 
Sbjct: 103269 ctcatttcaactcctagaacatccttgaccatctcgtatgtcacgaaggcaatggctatg 103210

                           
Query: 342    gaaggcaccacct 354
              ||||| |||||||
Sbjct: 103209 gaagggaccacct 103197



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>ref|XM_850243.1| PREDICTED: Canis familiaris similar to chromosome 14 open reading
            frame 68 (LOC612516), mRNA
          Length = 1167

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 308  cacggcctcgtacgtgacgaa 328
            |||||||||||||||||||||
Sbjct: 1137 cacggcctcgtacgtgacgaa 1117



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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 76      ttccgaagcgagagtgcggc 95
               ||||||||||||||||||||
Sbjct: 5007728 ttccgaagcgagagtgcggc 5007709



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>gb|AY453362.1| Uncultured bacterium clone C57 dissimilatory membrane-bound nitrate
           reductase (narG) gene, partial cds
          Length = 662

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 310 cggcctcgtacgtgacgaacgcgatggc 337
           |||||||||||||| |||||||| ||||
Sbjct: 323 cggcctcgtacgtggcgaacgcgctggc 350



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>emb|AL669841.7| Human DNA sequence from clone RP11-490E15 on chromosome 10 Contains
             part of the gene for a novel protein (KIAA0934) and a
             novel gene, complete sequence
          Length = 29877

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 346   gcaccaccttcactgagttg 365
             ||||||||||||||||||||
Sbjct: 14324 gcaccaccttcactgagttg 14305


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,728,687
Number of Sequences: 3902068
Number of extensions: 2728687
Number of successful extensions: 45535
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 45382
Number of HSP's gapped (non-prelim): 130
length of query: 402
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 380
effective length of database: 17,147,199,772
effective search space: 6515935913360
effective search space used: 6515935913360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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