ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags29a01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ784279.1| Hordeum vulgare subsp. vulgare partial mRNA for ... 398 e-108
2dbj|AK066766.1| Oryza sativa (japonica cultivar-group) cDNA clon... 212 1e-51
3gb|AY106323.1| Zea mays PCO084517 mRNA sequence 153 9e-34
4gb|AY773278.1| Zea mays carotenoid cleavage dioxygenase mRNA, co... 151 4e-33
5gb|AY146585.1| Zea mays carotenoid cleavage dioxygenase 1 mRNA, ... 151 4e-33
6gb|DQ100346.1| Zea mays carotenoid cleavage dioxygenase 1 (CCD1)... 145 2e-31
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 94 7e-16
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 94 7e-16
9emb|AL732378.3|CNS08C91 Oryza sativa chromosome 12, . BAC OSJNBa... 94 7e-16
10emb|BX664710.2|CNS09SC0 Oryza sativa chromosome 12, . PAC P0243A... 94 7e-16
11emb|AJ132927.1|CSA132927 Crocus sativus mRNA for crocetin dialde... 92 3e-15
12gb|DQ100347.1| Zea mays 9,10-9',10' carotenoid cleavage dioxygen... 86 2e-13
13ref|NM_116217.1| Arabidopsis thaliana CCD1 (CAROTENOID CLEAVAGE ... 76 2e-10
14gb|BT012034.1| Arabidopsis thaliana At3g63520 mRNA sequence 76 2e-10
15gb|BT000436.1| Arabidopsis thaliana neoxanthin cleavage enzyme n... 76 2e-10
16emb|AJ005813.1|ATH5813 Arabidopsis thaliana mRNA for carotenoid ... 76 2e-10
17gb|BT002102.1| Arabidopsis thaliana neoxanthin cleavage enzyme n... 76 2e-10
18gb|AY646239.1| Brassica rapa subsp. pekinensis 9-cis-epoxycarote... 62 3e-06
19gb|AY576003.1| Petunia x hybrida carotenoid cleavage dioxygenase... 56 2e-04
20emb|AL163818.1|ATMAA21 Arabidopsis thaliana DNA chromosome 3, P1... 54 6e-04
21emb|Y14164.1|CAY14164 Capsicum annuum mRNA for dioxygenase 50 0.010
22gb|DQ003599.1| Suaeda salsa carotenoid cleavage dioxygenase (CCD... 44 0.59
23gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete... 44 0.59
24gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome 44 0.59
25gb|AC132622.2| Mus musculus BAC clone RP23-108P15 from 18, compl... 42 2.3
26gb|AC163451.2| Mus musculus chromosome 18, clone RP24-173G16, co... 42 2.3
27gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 2.3
28emb|AJ549819.1|BOR549819 Bixa orellana mRNA for carotenoid cleav... 42 2.3
29ref|NM_211189.1| Eremothecium gossypii AFR287Wp (AFR287W), mRNA 42 2.3
30gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 40 9.2
31gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 9.2
32gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence 40 9.2
33gb|AC084397.5| Trypanosoma brucei chromosome 6 clone RPCI93-1I18... 40 9.2
34gb|AY625111.1| Escherichia coli B HisI gene, partial cds 40 9.2
35gb|AC146432.3| Pan troglodytes BAC clone RP43-19M2 from 7, compl... 40 9.2
36gb|AC034116.10| Mus musculus chromosome 16, clone RP23-428P5, co... 40 9.2
37gb|AC004002.1| Homo sapiens BAC clone CTA-356F9 from 7, complete... 40 9.2
38gb|AC004855.1| Homo sapiens PAC clone RP4-673O11 from 7, complet... 40 9.2
39gb|AE014075.1| Escherichia coli CFT073, complete genome 40 9.2
40gb|AC152503.5| Mus musculus BAC clone RP23-190G10 from chromosom... 40 9.2
41gb|AC142331.1| Pan troglodytes BAC clone RP43-28J15 from 7, comp... 40 9.2
42gb|AC145774.1| Pan troglodytes BAC clone RP43-160F1 from 7, comp... 40 9.2
43emb|X62518.1|SCPKSGC S.curacoi polyketide synthase gene cluster 40 9.2
44gb|CP000243.1| Escherichia coli UTI89, complete genome 40 9.2
45emb|AL391822.12| Human DNA sequence from clone RP11-494K3 on chr... 40 9.2
46emb|AL353615.37| Human DNA sequence from clone RP11-555H7 on chr... 40 9.2
47emb|AL136234.12| Human DNA sequence from clone RP5-933B4 on chro... 40 9.2
48emb|X71970.1|SFRFBAJ S.flexneri bB, galF, rfbA-J, rfbX, gnd, udg... 40 9.2
49gb|AC164250.4| Mus musculus BAC RP24-327O15 (Roswell Park Cance... 40 9.2
50emb|AL645589.24| Mouse DNA sequence from clone RP23-289H16 on ch... 40 9.2
51gb|AY657020.1| Escherichia coli O155 O-antigen gene cluster, par... 40 9.2
52dbj|AB120112.1| Lactuca sativa LsCCD2 mRNA for Lactuca sativa ca... 40 9.2
53gb|AF461121.1| Escherichia coli serotype O55:H7 O-antigen gene c... 40 9.2
54emb|BX649593.5| Zebrafish DNA sequence from clone CH211-12G4 in ... 40 9.2
55gb|AC147976.3| Pan troglodytes BAC clone CH251-543E22 from chrom... 40 9.2
56gb|AC146038.2| Pan troglodytes BAC clone RP43-96B12 from chromos... 40 9.2
57gb|AC006385.3|AC006385 Homo sapiens BAC clone RP11-559J5 from 2,... 40 9.2
58gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 40 9.2
59emb|AL953863.13| Zebrafish DNA sequence from clone CH211-113F11 ... 40 9.2
60gb|AF466200.2| Sorghum bicolor putative protein kinase gene, par... 40 9.2
61gb|AC155279.5| Mus musculus 6 BAC RP24-85A3 (Roswell Park Cancer... 40 9.2
62gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 40 9.2
63gb|AY220982.1| Escherichia coli O86:B7 O-antigen gene cluster, c... 40 9.2
64dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 40 9.2
65gb|CP000036.1| Shigella boydii Sb227, complete genome 40 9.2
66dbj|D43637.1|ECORFBM Escherichia coli rfb gene cluster encoding ... 40 9.2
67dbj|AB010150.1| Escherichia coli O8 wb gene cluster, complete cds 40 9.2
68dbj|AB008676.1| Escherichia coli 0157 DNA, map position at 46 mi... 40 9.2 
>emb|AJ784279.1| Hordeum vulgare subsp. vulgare partial mRNA for putative carotenoid
           cleavage dioxygenase 1 (ccd1 gene)
          Length = 201

 Score =  398 bits (201), Expect = e-108
 Identities = 201/201 (100%)
 Strand = Plus / Minus

                                                                       
Query: 299 accgccaccggatcagcagacatggtcttggcatcaatcacattcacttcagatttccct 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accgccaccggatcagcagacatggtcttggcatcaatcacattcacttcagatttccct 142

                                                                       
Query: 359 gtgttctcatcgtgcacaaagaatatcaggtacccatcgtcttcttccccggaaacacca 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gtgttctcatcgtgcacaaagaatatcaggtacccatcgtcttcttccccggaaacacca 82

                                                                       
Query: 419 ggctccttgggcacgaacaccgcctccgagccgaacctaccaggacccaggtcatatatg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  ggctccttgggcacgaacaccgcctccgagccgaacctaccaggacccaggtcatatatg 22

                                
Query: 479 cctgtaacgtttcccccgact 499
           |||||||||||||||||||||
Sbjct: 21  cctgtaacgtttcccccgact 1
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>dbj|AK066766.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088L06, full
            insert sequence
          Length = 2014

 Score =  212 bits (107), Expect = 1e-51
 Identities = 361/445 (81%), Gaps = 3/445 (0%)
 Strand = Plus / Minus

                                                                        
Query: 234  ccagttgttcctcgttgacgaagaaggcgtggaaaccgtaaggaacccggttcggcagct 293
            |||||||||||||||| |  ||||| || ||||| ||||| ||||| ||| | || ||||
Sbjct: 1807 ccagttgttcctcgtttataaagaaagcatggaatccgtagggaactcggcttggtagct 1748

                                                                        
Query: 294  cgacgaccgccaccggatcagcagacatggtcttggcatcaatcacattcacttcagatt 353
            | || || |||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 1747 caacaactgccaccggatcagcagacattgtctttgcatcaatcacattgacttcagatt 1688

                                                                        
Query: 354  tccctgtgttctcatcgtgcacaaagaatatcaggtacccatcgtcttcttccccggaaa 413
            ||||||| ||||| ||||| |||||||||||||  || ||||| |||||||| || || |
Sbjct: 1687 tccctgtattctcgtcgtggacaaagaatatcaaataaccatcatcttcttctccagata 1628

                                                                        
Query: 414  caccaggctccttgggcacgaacaccgcctccgagccgaacctaccaggacccaggtcat 473
            |||| || ||| | ||||| || |  ||||| || ||||| |||||||| |||| |||| 
Sbjct: 1627 caccgggttccctaggcacaaaaattgcctcggacccgaatctaccaggtcccaagtcaa 1568

                                                                        
Query: 474  atatgcctgtaacgtttcccccgacttcgagctgcttcttgcc---gctctctggatcgg 530
            |||| ||| | || |||||||| ||||| || || ||||||||   | |||| || || |
Sbjct: 1567 atattcctctcacatttccccccacttcaagttgtttcttgccactgatctccggttcag 1508

                                                                        
Query: 531  cgtgcaggtcgaatttgatgatcccggtcaccttcgcgatgctgtcgagtatcgtgcagt 590
            | || || || ||||| || || || |  |||||||| |||||||  || || | ||| |
Sbjct: 1507 catgtagatcaaattttataatgcctgctaccttcgctatgctgtttagaatagcgcaat 1448

                                                                        
Query: 591  agacataccgctgctttctgccggtatagctctcgttgattcgaggaaagtctacagcag 650
            | |||||||||||||||||||| || |||||||| || ||||||||||| ||||||||||
Sbjct: 1447 acacataccgctgctttctgccagtgtagctctcattaattcgaggaaaatctacagcag 1388

                                     
Query: 651  cgaccgacagttgcttctgtgaagc 675
              || || |||||||| ||||||||
Sbjct: 1387 aaacagatagttgcttttgtgaagc 1363
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>gb|AY106323.1| Zea mays PCO084517 mRNA sequence
          Length = 1884

 Score =  153 bits (77), Expect = 9e-34
 Identities = 188/225 (83%)
 Strand = Plus / Minus

                                                                        
Query: 257  aaggcgtggaaaccgtaaggaacccggttcggcagctcgacgaccgccaccggatcagca 316
            ||||| ||||| || ||||||||||  || || ||||| || ||||| || |||||||||
Sbjct: 1667 aaggcatggaatccataaggaaccctattaggaagctcaaccaccgcaactggatcagca 1608

                                                                        
Query: 317  gacatggtcttggcatcaatcacattcacttcagatttccctgtgttctcatcgtgcaca 376
            ||||| ||||| ||||| || ||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 1607 gacattgtctttgcatcgataacatttacttcagatttccctgtgttctcgtcgtgtaca 1548

                                                                        
Query: 377  aagaatatcaggtacccatcgtcttcttccccggaaacaccaggctccttgggcacgaac 436
            ||||||||||  || || || |||||||| ||||| ||||| || | |||||| || || 
Sbjct: 1547 aagaatatcaaatagccgtcatcttcttctccggacacacctggatgcttgggaacaaaa 1488

                                                         
Query: 437  accgcctccgagccgaacctaccaggacccaggtcatatatgcct 481
            | |||||| || || || |||||||| ||||||||||||||||||
Sbjct: 1487 atcgcctctgaaccaaatctaccaggtcccaggtcatatatgcct 1443



 Score =  119 bits (60), Expect = 1e-23
 Identities = 111/128 (86%)
 Strand = Plus / Minus

                                                                        
Query: 548  atgatcccggtcaccttcgcgatgctgtcgagtatcgtgcagtagacataccgctgcttt 607
            ||||| || ||||||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct: 1376 atgatgccagtcaccttcgcaatgctgtcaagtatagtgcagtagacataccgctgcttt 1317

                                                                        
Query: 608  ctgccggtatagctctcgttgattcgaggaaagtctacagcagcgaccgacagttgcttc 667
            ||||| ||||||||||| || |  |||||||| || |||||||  || |||| |||||| 
Sbjct: 1316 ctgccagtatagctctcattaacacgaggaaaatccacagcagaaacagacaattgcttt 1257

                    
Query: 668  tgtgaagc 675
            ||||||||
Sbjct: 1256 tgtgaagc 1249
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>gb|AY773278.1| Zea mays carotenoid cleavage dioxygenase mRNA, complete cds
          Length = 1857

 Score =  151 bits (76), Expect = 4e-33
 Identities = 190/228 (83%)
 Strand = Plus / Minus

                                                                        
Query: 254  aagaaggcgtggaaaccgtaaggaacccggttcggcagctcgacgaccgccaccggatca 313
            |||||||| ||||| || ||||||||||  || || ||||| || ||||| || ||||||
Sbjct: 1602 aagaaggcatggaatccataaggaaccctattaggaagctcaaccaccgcaactggatca 1543

                                                                        
Query: 314  gcagacatggtcttggcatcaatcacattcacttcagatttccctgtgttctcatcgtgc 373
            |||||||| ||||| ||||| || ||||| ||||||||||||||||||||||| ||||| 
Sbjct: 1542 gcagacattgtctttgcatcgataacatttacttcagatttccctgtgttctcgtcgtgt 1483

                                                                        
Query: 374  acaaagaatatcaggtacccatcgtcttcttccccggaaacaccaggctccttgggcacg 433
            |||||||||||||  || || || |||||||| || || ||||| || | |||||| || 
Sbjct: 1482 acaaagaatatcaaatagccgtcatcttcttctccagacacacctggatgcttgggaaca 1423

                                                            
Query: 434  aacaccgcctccgagccgaacctaccaggacccaggtcatatatgcct 481
            || | |||||| || || || |||||||| ||||||||||||||||||
Sbjct: 1422 aaaatcgcctctgaaccaaatctaccaggtcccaggtcatatatgcct 1375



 Score =  119 bits (60), Expect = 1e-23
 Identities = 111/128 (86%)
 Strand = Plus / Minus

                                                                        
Query: 548  atgatcccggtcaccttcgcgatgctgtcgagtatcgtgcagtagacataccgctgcttt 607
            ||||| || ||||||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct: 1308 atgatgccagtcaccttcgcaatgctgtcaagtatagtgcagtagacataccgctgcttt 1249

                                                                        
Query: 608  ctgccggtatagctctcgttgattcgaggaaagtctacagcagcgaccgacagttgcttc 667
            ||||| ||||||||||| || |  |||||||| || |||||||  || |||| |||||| 
Sbjct: 1248 ctgccagtatagctctcattaacacgaggaaaatccacagcagaaacagacaattgcttt 1189

                    
Query: 668  tgtgaagc 675
            ||||||||
Sbjct: 1188 tgtgaagc 1181
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>gb|AY146585.1| Zea mays carotenoid cleavage dioxygenase 1 mRNA, partial cds
          Length = 442

 Score =  151 bits (76), Expect = 4e-33
 Identities = 190/228 (83%)
 Strand = Plus / Minus

                                                                       
Query: 254 aagaaggcgtggaaaccgtaaggaacccggttcggcagctcgacgaccgccaccggatca 313
           |||||||| ||||| || ||||||||||  || || ||||| || ||||| || ||||||
Sbjct: 269 aagaaggcatggaatccataaggaaccctattaggaagctcaaccaccgcaactggatca 210

                                                                       
Query: 314 gcagacatggtcttggcatcaatcacattcacttcagatttccctgtgttctcatcgtgc 373
           |||||||| ||||| ||||| || ||||| ||||||||||||||||| ||||| ||||| 
Sbjct: 209 gcagacattgtctttgcatcgataacatttacttcagatttccctgtattctcgtcgtgt 150

                                                                       
Query: 374 acaaagaatatcaggtacccatcgtcttcttccccggaaacaccaggctccttgggcacg 433
           |||||||||||||  || || || |||||||| ||||| ||||| || | |||||| || 
Sbjct: 149 acaaagaatatcaaatagccgtcatcttcttctccggacacacctggatgcttgggaaca 90

                                                           
Query: 434 aacaccgcctccgagccgaacctaccaggacccaggtcatatatgcct 481
           || | |||||| || || || |||||||| ||||||||||||||||||
Sbjct: 89  aaaatcgcctctgaaccaaatctaccaggtcccaggtcatatatgcct 42
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>gb|DQ100346.1| Zea mays carotenoid cleavage dioxygenase 1 (CCD1) mRNA, complete cds
          Length = 1843

 Score =  145 bits (73), Expect = 2e-31
 Identities = 187/225 (83%)
 Strand = Plus / Minus

                                                                        
Query: 257  aaggcgtggaaaccgtaaggaacccggttcggcagctcgacgaccgccaccggatcagca 316
            ||||| ||||| || ||||||||||  || || ||||| || ||||| || |||||||||
Sbjct: 1658 aaggcatggaatccataaggaaccctattaggaagctcaaccaccgcaactggatcagca 1599

                                                                        
Query: 317  gacatggtcttggcatcaatcacattcacttcagatttccctgtgttctcatcgtgcaca 376
            ||||| ||||| ||||| || ||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 1598 gacattgtctttgcatcgataacatttacttcagatttccctgtgttctcgtcgtgtaca 1539

                                                                        
Query: 377  aagaatatcaggtacccatcgtcttcttccccggaaacaccaggctccttgggcacgaac 436
            ||||||||||  || || || |||||||| || || ||||| || | |||||| || || 
Sbjct: 1538 aagaatatcaaatagccgtcatcttcttctccagacacacctggatgcttgggaacaaaa 1479

                                                         
Query: 437  accgcctccgagccgaacctaccaggacccaggtcatatatgcct 481
            | |||||| || || || |||||||| ||||||||||||||||||
Sbjct: 1478 atcgcctctgaaccaaatctaccaggtcccaggtcatatatgcct 1434



 Score =  119 bits (60), Expect = 1e-23
 Identities = 111/128 (86%)
 Strand = Plus / Minus

                                                                        
Query: 548  atgatcccggtcaccttcgcgatgctgtcgagtatcgtgcagtagacataccgctgcttt 607
            ||||| || ||||||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct: 1367 atgatgccagtcaccttcgcaatgctgtcaagtatagtgcagtagacataccgctgcttt 1308

                                                                        
Query: 608  ctgccggtatagctctcgttgattcgaggaaagtctacagcagcgaccgacagttgcttc 667
            ||||| ||||||||||| || |  |||||||| || |||||||  || |||| |||||| 
Sbjct: 1307 ctgccagtatagctctcattaacacgaggaaaatccacagcagaaacagacaattgcttt 1248

                    
Query: 668  tgtgaagc 675
            ||||||||
Sbjct: 1247 tgtgaagc 1240
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 89/103 (86%)
 Strand = Plus / Minus

                                                                            
Query: 254      aagaaggcgtggaaaccgtaaggaacccggttcggcagctcgacgaccgccaccggatca 313
                ||||| || ||||| ||||| ||||| ||| | || ||||| || || ||||||||||||
Sbjct: 27507416 aagaaagcatggaatccgtagggaactcggcttggtagctcaacaactgccaccggatca 27507357

                                                           
Query: 314      gcagacatggtcttggcatcaatcacattcacttcagatttcc 356
                |||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 27507356 gcagacattgtctttgcatcaatcacattgacttcagatttcc 27507314



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 130/162 (80%)
 Strand = Plus / Minus

                                                                            
Query: 355      ccctgtgttctcatcgtgcacaaagaatatcaggtacccatcgtcttcttccccggaaac 414
                |||||| ||||| ||||| |||||||||||||  || ||||| |||||||| || || ||
Sbjct: 27507159 ccctgtattctcgtcgtggacaaagaatatcaaataaccatcatcttcttctccagatac 27507100

                                                                            
Query: 415      accaggctccttgggcacgaacaccgcctccgagccgaacctaccaggacccaggtcata 474
                ||| || ||| | ||||| || |  ||||| || ||||| |||||||| |||| |||| |
Sbjct: 27507099 accgggttccctaggcacaaaaattgcctcggacccgaatctaccaggtcccaagtcaaa 27507040

                                                          
Query: 475      tatgcctgtaacgtttcccccgacttcgagctgcttcttgcc 516
                ||| ||| | || |||||||| ||||| || || ||||||||
Sbjct: 27507039 tattcctctcacatttccccccacttcaagttgtttcttgcc 27506998



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                            
Query: 608      ctgccggtatagctctcgttgattcgaggaaagtctacagcagcgaccgacagttgcttc 667
                ||||| || |||||||| || ||||||||||| ||||||||||  || || |||||||| 
Sbjct: 27506669 ctgccagtgtagctctcattaattcgaggaaaatctacagcagaaacagatagttgcttt 27506610

                        
Query: 668      tgtgaagc 675
                ||||||||
Sbjct: 27506609 tgtgaagc 27506602
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 89/103 (86%)
 Strand = Plus / Minus

                                                                            
Query: 254      aagaaggcgtggaaaccgtaaggaacccggttcggcagctcgacgaccgccaccggatca 313
                ||||| || ||||| ||||| ||||| ||| | || ||||| || || ||||||||||||
Sbjct: 27432974 aagaaagcatggaatccgtagggaactcggcttggtagctcaacaactgccaccggatca 27432915

                                                           
Query: 314      gcagacatggtcttggcatcaatcacattcacttcagatttcc 356
                |||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 27432914 gcagacattgtctttgcatcaatcacattgacttcagatttcc 27432872



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 118/147 (80%)
 Strand = Plus / Minus

                                                                            
Query: 355      ccctgtgttctcatcgtgcacaaagaatatcaggtacccatcgtcttcttccccggaaac 414
                |||||| ||||| ||||| |||||||||||||  || ||||| |||||||| || || ||
Sbjct: 27432717 ccctgtattctcgtcgtggacaaagaatatcaaataaccatcatcttcttctccagatac 27432658

                                                                            
Query: 415      accaggctccttgggcacgaacaccgcctccgagccgaacctaccaggacccaggtcata 474
                ||| || ||| | ||||| || |  ||||| || ||||| |||||||| |||| |||| |
Sbjct: 27432657 accgggttccctaggcacaaaaattgcctcggacccgaatctaccaggtcccaagtcaaa 27432598

                                           
Query: 475      tatgcctgtaacgtttcccccgacttc 501
                ||| ||| | || |||||||| |||||
Sbjct: 27432597 tattcctctcacatttccccccacttc 27432571



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                            
Query: 608      ctgccggtatagctctcgttgattcgaggaaagtctacagcagcgaccgacagttgcttc 667
                ||||| || |||||||| || ||||||||||| ||||||||||  || || |||||||| 
Sbjct: 27432226 ctgccagtgtagctctcattaattcgaggaaaatctacagcagaaacagatagttgcttt 27432167

                        
Query: 668      tgtgaagc 675
                ||||||||
Sbjct: 27432166 tgtgaagc 27432159
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>emb|AL732378.3|CNS08C91 Oryza sativa chromosome 12, . BAC OSJNBa0063N15 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 109222

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 89/103 (86%)
 Strand = Plus / Minus

                                                                         
Query: 254   aagaaggcgtggaaaccgtaaggaacccggttcggcagctcgacgaccgccaccggatca 313
             ||||| || ||||| ||||| ||||| ||| | || ||||| || || ||||||||||||
Sbjct: 83330 aagaaagcatggaatccgtagggaactcggcttggtagctcaacaactgccaccggatca 83271

                                                        
Query: 314   gcagacatggtcttggcatcaatcacattcacttcagatttcc 356
             |||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 83270 gcagacattgtctttgcatcaatcacattgacttcagatttcc 83228



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 130/162 (80%)
 Strand = Plus / Minus

                                                                         
Query: 355   ccctgtgttctcatcgtgcacaaagaatatcaggtacccatcgtcttcttccccggaaac 414
             |||||| ||||| ||||| |||||||||||||  || ||||| |||||||| || || ||
Sbjct: 83073 ccctgtattctcgtcgtggacaaagaatatcaaataaccatcatcttcttctccagatac 83014

                                                                         
Query: 415   accaggctccttgggcacgaacaccgcctccgagccgaacctaccaggacccaggtcata 474
             ||| || ||| | ||||| || |  ||||| || ||||| |||||||| |||| |||| |
Sbjct: 83013 accgggttccctaggcacaaaaattgcctcggacccgaatctaccaggtcccaagtcaaa 82954

                                                       
Query: 475   tatgcctgtaacgtttcccccgacttcgagctgcttcttgcc 516
             ||| ||| | || |||||||| ||||| || || ||||||||
Sbjct: 82953 tattcctctcacatttccccccacttcaagttgtttcttgcc 82912



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                         
Query: 608   ctgccggtatagctctcgttgattcgaggaaagtctacagcagcgaccgacagttgcttc 667
             ||||| || |||||||| || ||||||||||| ||||||||||  || || |||||||| 
Sbjct: 82583 ctgccagtgtagctctcattaattcgaggaaaatctacagcagaaacagatagttgcttt 82524

                     
Query: 668   tgtgaagc 675
             ||||||||
Sbjct: 82523 tgtgaagc 82516
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>emb|BX664710.2|CNS09SC0 Oryza sativa chromosome 12, . PAC P0243A04 of chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 78611

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 89/103 (86%)
 Strand = Plus / Plus

                                                                         
Query: 254   aagaaggcgtggaaaccgtaaggaacccggttcggcagctcgacgaccgccaccggatca 313
             ||||| || ||||| ||||| ||||| ||| | || ||||| || || ||||||||||||
Sbjct: 59578 aagaaagcatggaatccgtagggaactcggcttggtagctcaacaactgccaccggatca 59637

                                                        
Query: 314   gcagacatggtcttggcatcaatcacattcacttcagatttcc 356
             |||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 59638 gcagacattgtctttgcatcaatcacattgacttcagatttcc 59680



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 118/147 (80%)
 Strand = Plus / Plus

                                                                         
Query: 355   ccctgtgttctcatcgtgcacaaagaatatcaggtacccatcgtcttcttccccggaaac 414
             |||||| ||||| ||||| |||||||||||||  || ||||| |||||||| || || ||
Sbjct: 59835 ccctgtattctcgtcgtggacaaagaatatcaaataaccatcatcttcttctccagatac 59894

                                                                         
Query: 415   accaggctccttgggcacgaacaccgcctccgagccgaacctaccaggacccaggtcata 474
             ||| || ||| | ||||| || |  ||||| || ||||| |||||||| |||| |||| |
Sbjct: 59895 accgggttccctaggcacaaaaattgcctcggacccgaatctaccaggtcccaagtcaaa 59954

                                        
Query: 475   tatgcctgtaacgtttcccccgacttc 501
             ||| ||| | || |||||||| |||||
Sbjct: 59955 tattcctctcacatttccccccacttc 59981



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                         
Query: 608   ctgccggtatagctctcgttgattcgaggaaagtctacagcagcgaccgacagttgcttc 667
             ||||| || |||||||| || ||||||||||| ||||||||||  || || |||||||| 
Sbjct: 60326 ctgccagtgtagctctcattaattcgaggaaaatctacagcagaaacagatagttgcttt 60385

                     
Query: 668   tgtgaagc 675
             ||||||||
Sbjct: 60386 tgtgaagc 60393
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>emb|AJ132927.1|CSA132927 Crocus sativus mRNA for crocetin dialdehyde
          Length = 1686

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 139/170 (81%)
 Strand = Plus / Minus

                                                                        
Query: 236  agttgttcctcgttgacgaagaaggcgtggaaaccgtaaggaacccggttcggcagctcg 295
            ||||||||||| || ||||||||||| || || || ||||| || |  || ||||| || 
Sbjct: 1637 agttgttcctcattcacgaagaaggcatgaaatccataaggtactctatttggcagttca 1578

                                                                        
Query: 296  acgaccgccaccggatcagcagacatggtcttggcatcaatcacattcacttcagatttc 355
            || || ||||| || || || ||||| ||||||||||| || || || ||||||||||||
Sbjct: 1577 acaacagccacaggttctgcggacattgtcttggcatcgattacgtttacttcagatttc 1518

                                                              
Query: 356  cctgtgttctcatcgtgcacaaagaatatcaggtacccatcgtcttcttc 405
            || ||||||||||| || ||||||||||||| ||| ||||| || |||||
Sbjct: 1517 ccagtgttctcatcatgtacaaagaatatcaagtagccatcatcctcttc 1468
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>gb|DQ100347.1| Zea mays 9,10-9',10' carotenoid cleavage dioxygenase 1 (CCD1) gene,
            complete cds
          Length = 8665

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                        
Query: 548  atgatcccggtcaccttcgcgatgctgtcgagtatcgtgcagtagacataccgctgcttt 607
            ||||| || ||||||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct: 4729 atgatgccagtcaccttcgcaatgctgtcaagtatagtgcagtagacataccgctgcttt 4670

               
Query: 608  ctg 610
            |||
Sbjct: 4669 ctg 4667



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 105/127 (82%)
 Strand = Plus / Minus

                                                                        
Query: 355  ccctgtgttctcatcgtgcacaaagaatatcaggtacccatcgtcttcttccccggaaac 414
            |||||||||||| ||||| |||||||||||||  || || || |||||||| || || ||
Sbjct: 4922 ccctgtgttctcgtcgtgtacaaagaatatcaaatagccgtcatcttcttctccagacac 4863

                                                                        
Query: 415  accaggctccttgggcacgaacaccgcctccgagccgaacctaccaggacccaggtcata 474
            ||| || | |||||| || || | |||||| || || || |||||||| |||||||||||
Sbjct: 4862 acctggatgcttgggaacaaaaatcgcctctgaaccaaatctaccaggtcccaggtcata 4803

                   
Query: 475  tatgcct 481
            |||||||
Sbjct: 4802 tatgcct 4796



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 84/100 (84%)
 Strand = Plus / Minus

                                                                        
Query: 257  aaggcgtggaaaccgtaaggaacccggttcggcagctcgacgaccgccaccggatcagca 316
            ||||| ||||| || ||||||||||  || || ||||| || ||||| || |||||||||
Sbjct: 5210 aaggcatggaatccataaggaaccctattaggaagctcaaccaccgcaactggatcagca 5151

                                                    
Query: 317  gacatggtcttggcatcaatcacattcacttcagatttcc 356
            ||||| ||||| ||||| || ||||| |||||||||||||
Sbjct: 5150 gacattgtctttgcatcgataacatttacttcagatttcc 5111
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>ref|NM_116217.1| Arabidopsis thaliana CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)
            AT3G63520 (CCD1) mRNA, complete cds
          Length = 1617

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 137/170 (80%)
 Strand = Plus / Minus

                                                                        
Query: 236  agttgttcctcgttgacgaagaaggcgtggaaaccgtaaggaacccggttcggcagctcg 295
            |||||||||||  | || || ||||| ||||| || || || |||| || ||||||||| 
Sbjct: 1595 agttgttcctctgtaacaaacaaggcatggaagccatatgggaccctgtgcggcagctcc 1536

                                                                        
Query: 296  acgaccgccaccggatcagcagacatggtcttggcatcaatcacattcacttcagatttc 355
            || || |||||||| ||||| ||||| || || || || |||||| ||||    ||||||
Sbjct: 1535 accactgccaccggttcagccgacattgtttttgcgtctatcacagtcacgcatgatttc 1476

                                                              
Query: 356  cctgtgttctcatcgtgcacaaagaatatcaggtacccatcgtcttcttc 405
            |||||||| ||||| || ||||||||||||| ||| || |||||||||||
Sbjct: 1475 cctgtgttttcatcatgaacaaagaatatcaagtaaccgtcgtcttcttc 1426
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>gb|BT012034.1| Arabidopsis thaliana At3g63520 mRNA sequence
          Length = 1614

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 137/170 (80%)
 Strand = Plus / Minus

                                                                        
Query: 236  agttgttcctcgttgacgaagaaggcgtggaaaccgtaaggaacccggttcggcagctcg 295
            |||||||||||  | || || ||||| ||||| || || || |||| || ||||||||| 
Sbjct: 1592 agttgttcctctgtaacaaacaaggcatggaagccatatgggaccctgtgcggcagctcc 1533

                                                                        
Query: 296  acgaccgccaccggatcagcagacatggtcttggcatcaatcacattcacttcagatttc 355
            || || |||||||| ||||| ||||| || || || || |||||| ||||    ||||||
Sbjct: 1532 accactgccaccggttcagccgacattgtttttgcgtctatcacagtcacgcatgatttc 1473

                                                              
Query: 356  cctgtgttctcatcgtgcacaaagaatatcaggtacccatcgtcttcttc 405
            |||||||| ||||| || ||||||||||||| ||| || |||||||||||
Sbjct: 1472 cctgtgttttcatcatgaacaaagaatatcaagtaaccgtcgtcttcttc 1423
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>gb|BT000436.1| Arabidopsis thaliana neoxanthin cleavage enzyme nc1 (At3g63520) mRNA,
            complete cds
          Length = 1704

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 137/170 (80%)
 Strand = Plus / Minus

                                                                        
Query: 236  agttgttcctcgttgacgaagaaggcgtggaaaccgtaaggaacccggttcggcagctcg 295
            |||||||||||  | || || ||||| ||||| || || || |||| || ||||||||| 
Sbjct: 1502 agttgttcctctgtaacaaacaaggcatggaagccatatgggaccctgtgcggcagctcc 1443

                                                                        
Query: 296  acgaccgccaccggatcagcagacatggtcttggcatcaatcacattcacttcagatttc 355
            || || |||||||| ||||| ||||| || || || || |||||| ||||    ||||||
Sbjct: 1442 accactgccaccggttcagccgacattgtttttgcgtctatcacagtcacgcatgatttc 1383

                                                              
Query: 356  cctgtgttctcatcgtgcacaaagaatatcaggtacccatcgtcttcttc 405
            |||||||| ||||| || ||||||||||||| ||| || |||||||||||
Sbjct: 1382 cctgtgttttcatcatgaacaaagaatatcaagtaaccgtcgtcttcttc 1333
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>emb|AJ005813.1|ATH5813 Arabidopsis thaliana mRNA for carotenoid cleavage dioxygenase 1 (ccd1
            gene)
          Length = 1846

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 137/170 (80%)
 Strand = Plus / Minus

                                                                        
Query: 236  agttgttcctcgttgacgaagaaggcgtggaaaccgtaaggaacccggttcggcagctcg 295
            |||||||||||  | || || ||||| ||||| || || || |||| || ||||||||| 
Sbjct: 1641 agttgttcctctgtaacaaacaaggcatggaagccatatgggaccctgtgcggcagctcc 1582

                                                                        
Query: 296  acgaccgccaccggatcagcagacatggtcttggcatcaatcacattcacttcagatttc 355
            || || |||||||| ||||| ||||| || || || || |||||| ||||    ||||||
Sbjct: 1581 accactgccaccggttcagccgacattgtttttgcgtctatcacagtcacgcatgatttc 1522

                                                              
Query: 356  cctgtgttctcatcgtgcacaaagaatatcaggtacccatcgtcttcttc 405
            |||||||| ||||| || ||||||||||||| ||| || |||||||||||
Sbjct: 1521 cctgtgttttcatcatgaacaaagaatatcaagtaaccgtcgtcttcttc 1472
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>gb|BT002102.1| Arabidopsis thaliana neoxanthin cleavage enzyme nc1 (At3g63520) mRNA,
            complete cds
          Length = 1562

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 137/170 (80%)
 Strand = Plus / Minus

                                                                        
Query: 236  agttgttcctcgttgacgaagaaggcgtggaaaccgtaaggaacccggttcggcagctcg 295
            |||||||||||  | || || ||||| ||||| || || || |||| || ||||||||| 
Sbjct: 1484 agttgttcctctgtaacaaacaaggcatggaagccatatgggaccctgtgcggcagctcc 1425

                                                                        
Query: 296  acgaccgccaccggatcagcagacatggtcttggcatcaatcacattcacttcagatttc 355
            || || |||||||| ||||| ||||| || || || || |||||| ||||    ||||||
Sbjct: 1424 accactgccaccggttcagccgacattgtttttgcgtctatcacagtcacgcatgatttc 1365

                                                              
Query: 356  cctgtgttctcatcgtgcacaaagaatatcaggtacccatcgtcttcttc 405
            |||||||| ||||| || ||||||||||||| ||| || |||||||||||
Sbjct: 1364 cctgtgttttcatcatgaacaaagaatatcaagtaaccgtcgtcttcttc 1315
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>gb|AY646239.1| Brassica rapa subsp. pekinensis 9-cis-epoxycarotenoid dioxygenase
            mRNA, complete cds
          Length = 2020

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 115/143 (80%)
 Strand = Plus / Minus

                                                                        
Query: 236  agttgttcctcgttgacgaagaaggcgtggaaaccgtaaggaacccggttcggcagctcg 295
            |||||||||||  | || |||||||| ||||| || || |||||||  | ||||||||| 
Sbjct: 1755 agttgttcctctgtaacaaagaaggcatggaagccatatggaaccctatgcggcagctcc 1696

                                                                        
Query: 296  acgaccgccaccggatcagcagacatggtcttggcatcaatcacattcacttcagatttc 355
            || || ||||| || ||||||||||| || || || ||||||||||||||    ||||||
Sbjct: 1695 accactgccactggctcagcagacattgtttttgcgtcaatcacattcacacatgatttc 1636

                                   
Query: 356  cctgtgttctcatcgtgcacaaa 378
            | ||| ||||| ||||| |||||
Sbjct: 1635 catgtcttctcgtcgtgaacaaa 1613
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>gb|AY576003.1| Petunia x hybrida carotenoid cleavage dioxygenase 1 (CCD1) mRNA,
            complete cds
          Length = 1641

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 133/168 (79%)
 Strand = Plus / Minus

                                                                        
Query: 238  ttgttcctcgttgacgaagaaggcgtggaaaccgtaaggaacccggttcggcagctcgac 297
            |||||||||  |||| |||||||| ||||| || |||||||| |  || || || || ||
Sbjct: 1617 ttgttcctctgtgacaaagaaggcatggaatccataaggaactcttttgggtagttcaac 1558

                                                                        
Query: 298  gaccgccaccggatcagcagacatggtcttggcatcaatcacattcacttcagatttccc 357
             || ||||| || || || ||||| || || |||||||||||||||||  | || || ||
Sbjct: 1557 aactgccactggctctgctgacattgtttttgcatcaatcacattcacagctgactttcc 1498

                                                            
Query: 358  tgtgttctcatcgtgcacaaagaatatcaggtacccatcgtcttcttc 405
             ||||||||||| || || |||||||||| ||| ||||| || |||||
Sbjct: 1497 agtgttctcatcatgtacgaagaatatcaagtaaccatcatcctcttc 1450
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>emb|AL163818.1|ATMAA21 Arabidopsis thaliana DNA chromosome 3, P1 clone MAA21 (ESSA project)
          Length = 79153

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                
Query: 355   ccctgtgttctcatcgtgcacaaagaatatcaggtacccatcgtcttcttc 405
             ||||||||| ||||| || ||||||||||||| ||| || |||||||||||
Sbjct: 77884 ccctgtgttttcatcatgaacaaagaatatcaagtaaccgtcgtcttcttc 77834
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>emb|Y14164.1|CAY14164 Capsicum annuum mRNA for dioxygenase
          Length = 1776

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                        
Query: 329  gcatcaatcacattcacttcagatttccctgtgttctcatcgtgcacaaagaatatcagg 388
            |||||||| ||||||||  | || || || ||||||||||| || ||||||||||||| |
Sbjct: 1556 gcatcaattacattcacagctgactttccagtgttctcatcatgtacaaagaatatcaag 1497

                             
Query: 389  tacccatcgtcttcttc 405
             | |||||||| |||||
Sbjct: 1496 aagccatcgtcctcttc 1480
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>gb|DQ003599.1| Suaeda salsa carotenoid cleavage dioxygenase (CCD1) mRNA, complete
            cds
          Length = 1972

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 79/98 (80%)
 Strand = Plus / Minus

                                                                        
Query: 308  ggatcagcagacatggtcttggcatcaatcacattcacttcagatttccctgtgttctca 367
            |||||||| ||||| || || |||||||| ||||| ||    ||||| |||||||| || 
Sbjct: 1649 ggatcagcggacattgttttcgcatcaattacattaacaaatgatttacctgtgttttcg 1590

                                                  
Query: 368  tcgtgcacaaagaatatcaggtacccatcgtcttcttc 405
            || ||||||||||| ||||  || ||||| ||||||||
Sbjct: 1589 tcatgcacaaagaagatcaaatatccatcatcttcttc 1552
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>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome
          Length = 1308759

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 120    ctagcaatttatttatctccta 141
              ||||||||||||||||||||||
Sbjct: 288120 ctagcaatttatttatctccta 288141
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>gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome
          Length = 1181404

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 223    ttgttgatgtaccagttgttcc 244
              ||||||||||||||||||||||
Sbjct: 822661 ttgttgatgtaccagttgttcc 822682
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>gb|AC132622.2| Mus musculus BAC clone RP23-108P15 from 18, complete sequence
          Length = 171209

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    tataataatcctatatggaat 30
             |||||||||||||||||||||
Sbjct: 47685 tataataatcctatatggaat 47665
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>gb|AC163451.2| Mus musculus chromosome 18, clone RP24-173G16, complete sequence
          Length = 146338

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 10   tataataatcctatatggaat 30
            |||||||||||||||||||||
Sbjct: 2461 tataataatcctatatggaat 2481
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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
              complete sequence
          Length = 1813164

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 632    cgaggaaagtctacagcagcg 652
              |||||||||||||||||||||
Sbjct: 958439 cgaggaaagtctacagcagcg 958459
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>emb|AJ549819.1|BOR549819 Bixa orellana mRNA for carotenoid cleavage dioxygenase (ccd gene)
          Length = 1635

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 361  gttctcatcgtgcacaaagaatatcaggtacccatcgtcttcttc 405
            |||||| ||||| |||||||||| ||  || ||||||||||||||
Sbjct: 1491 gttctcgtcgtgtacaaagaataccaaatagccatcgtcttcttc 1447
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>ref|NM_211189.1| Eremothecium gossypii AFR287Wp (AFR287W), mRNA
          Length = 1836

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 632  cgaggaaagtctacagcagcg 652
            |||||||||||||||||||||
Sbjct: 1479 cgaggaaagtctacagcagcg 1499
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 252     cgaagaaggcgtggaaaccg 271
               ||||||||||||||||||||
Sbjct: 2103404 cgaagaaggcgtggaaaccg 2103423
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    gttcggcagctcgacgaccg 302
              ||||||||||||||||||||
Sbjct: 687853 gttcggcagctcgacgaccg 687872
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>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence
          Length = 1618915

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 584     gtgcagtagacataccgctg 603
               ||||||||||||||||||||
Sbjct: 1458470 gtgcagtagacataccgctg 1458451
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>gb|AC084397.5| Trypanosoma brucei chromosome 6 clone RPCI93-1I18, complete sequence
          Length = 169543

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 584  gtgcagtagacataccgctg 603
            ||||||||||||||||||||
Sbjct: 9098 gtgcagtagacataccgctg 9079
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>gb|AY625111.1| Escherichia coli B HisI gene, partial cds
          Length = 503

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 252 cgaagaaggcgtggaaaccg 271
           ||||||||||||||||||||
Sbjct: 111 cgaagaaggcgtggaaaccg 92
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>gb|AC146432.3| Pan troglodytes BAC clone RP43-19M2 from 7, complete sequence
          Length = 177888

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   ctcttcacacctctgcttgt 226
             ||||||||||||||||||||
Sbjct: 44230 ctcttcacacctctgcttgt 44211
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>gb|AC034116.10| Mus musculus chromosome 16, clone RP23-428P5, complete sequence
          Length = 210023

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 495    cgacttcgagctgcttcttg 514
              ||||||||||||||||||||
Sbjct: 181200 cgacttcgagctgcttcttg 181181
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>gb|AC004002.1| Homo sapiens BAC clone CTA-356F9 from 7, complete sequence
          Length = 112314

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 207  ctcttcacacctctgcttgt 226
            ||||||||||||||||||||
Sbjct: 6613 ctcttcacacctctgcttgt 6632
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>gb|AC004855.1| Homo sapiens PAC clone RP4-673O11 from 7, complete sequence
          Length = 74816

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   atcactcactcctcttcaca 215
             ||||||||||||||||||||
Sbjct: 46934 atcactcactcctcttcaca 46915
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 252     cgaagaaggcgtggaaaccg 271
               ||||||||||||||||||||
Sbjct: 2385123 cgaagaaggcgtggaaaccg 2385142
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>gb|AC152503.5| Mus musculus BAC clone RP23-190G10 from chromosome 16, complete
             sequence
          Length = 204940

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   cgacttcgagctgcttcttg 514
             ||||||||||||||||||||
Sbjct: 24192 cgacttcgagctgcttcttg 24173
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>gb|AC142331.1| Pan troglodytes BAC clone RP43-28J15 from 7, complete sequence
          Length = 140363

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    atcactcactcctcttcaca 215
              ||||||||||||||||||||
Sbjct: 134804 atcactcactcctcttcaca 134823
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>gb|AC145774.1| Pan troglodytes BAC clone RP43-160F1 from 7, complete sequence
          Length = 208178

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    atcactcactcctcttcaca 215
              ||||||||||||||||||||
Sbjct: 137653 atcactcactcctcttcaca 137672
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>emb|X62518.1|SCPKSGC S.curacoi polyketide synthase gene cluster
          Length = 5469

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 553  cccggtcaccttcgcgatgc 572
            ||||||||||||||||||||
Sbjct: 5323 cccggtcaccttcgcgatgc 5304
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 252     cgaagaaggcgtggaaaccg 271
               ||||||||||||||||||||
Sbjct: 2235473 cgaagaaggcgtggaaaccg 2235492
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>emb|AL391822.12| Human DNA sequence from clone RP11-494K3 on chromosome 1 Contains the
             3' end of the gene for neurofascin (NFASC) and a ribosomal
             protein L13a (RPL13A) pseudogene, complete sequence
          Length = 115292

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 1     atttatncttataataatcctat 23
             |||||| ||||||||||||||||
Sbjct: 44067 atttattcttataataatcctat 44045
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>emb|AL353615.37| Human DNA sequence from clone RP11-555H7 on chromosome 9 Contains a
             gene for a novel protein (MGC35463), complete sequence
          Length = 107891

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   agatttccctgtgttctcat 368
             ||||||||||||||||||||
Sbjct: 71748 agatttccctgtgttctcat 71729
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>emb|AL136234.12| Human DNA sequence from clone RP5-933B4 on chromosome 1p22.3-31.1
             Contains a novel gene and the 5' end of a novel gene,
             complete sequence
          Length = 119481

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   tcttggcatcaatcacattc 343
             ||||||||||||||||||||
Sbjct: 52292 tcttggcatcaatcacattc 52311
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>emb|X71970.1|SFRFBAJ S.flexneri bB, galF, rfbA-J, rfbX, gnd, udg, rol and rfc genes
          Length = 18059

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   cgaagaaggcgtggaaaccg 271
             ||||||||||||||||||||
Sbjct: 17607 cgaagaaggcgtggaaaccg 17588
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>gb|AC164250.4| Mus musculus  BAC RP24-327O15 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 221612

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   gtatcactcactcctcttca 213
             ||||||||||||||||||||
Sbjct: 98674 gtatcactcactcctcttca 98655
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>emb|AL645589.24| Mouse DNA sequence from clone RP23-289H16 on chromosome 11 Contains the
             3' end of the Vdac1 gene for voltage-dependent anion
             channel 1, a novel gene (9530068E07Rik), a
             ubiquinol-cytochrome c reductase subunit (Uqcr)
             pseudogene, a novel pseudogene, a ribosomal protein S28
             (Rps28) pseudogene and a CpG island, complete sequence
          Length = 165536

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    ataaataaccccgggtgaaa 67
             ||||||||||||||||||||
Sbjct: 58255 ataaataaccccgggtgaaa 58274
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>gb|AY657020.1| Escherichia coli O155 O-antigen gene cluster, partial sequence
          Length = 12755

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   cgaagaaggcgtggaaaccg 271
             ||||||||||||||||||||
Sbjct: 12567 cgaagaaggcgtggaaaccg 12548
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>dbj|AB120112.1| Lactuca sativa LsCCD2 mRNA for Lactuca sativa carotenoid cleavage
            dioxygenase 2, complete cds
          Length = 1877

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 350  gatttccctgtgttctcatcgtgcacaaagaatatcaggtacccatcgtcttcttc 405
            |||||||||||| ||||||| ||   |||||| |||| ||| ||||| ||||||||
Sbjct: 1533 gatttccctgtggtctcatcatgtgtaaagaagatcaagtagccatcatcttcttc 1478
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>gb|AF461121.1| Escherichia coli serotype O55:H7 O-antigen gene cluster, complete
             sequence
          Length = 27730

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   cgaagaaggcgtggaaaccg 271
             ||||||||||||||||||||
Sbjct: 21279 cgaagaaggcgtggaaaccg 21260
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>emb|BX649593.5| Zebrafish DNA sequence from clone CH211-12G4 in linkage group 18,
             complete sequence
          Length = 71293

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 80    cgattaattcactcaatgtacaaatatt 107
             ||||||||||||| |||| |||||||||
Sbjct: 51258 cgattaattcactgaatgcacaaatatt 51285
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>gb|AC147976.3| Pan troglodytes BAC clone CH251-543E22 from chromosome 7, complete
             sequence
          Length = 231294

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   atcactcactcctcttcaca 215
             ||||||||||||||||||||
Sbjct: 55241 atcactcactcctcttcaca 55222
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>gb|AC146038.2| Pan troglodytes BAC clone RP43-96B12 from chromosome 7, complete sequence
          Length = 189363

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    ctcttcacacctctgcttgt 226
              ||||||||||||||||||||
Sbjct: 179667 ctcttcacacctctgcttgt 179686
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>gb|AC006385.3|AC006385 Homo sapiens BAC clone RP11-559J5 from 2, complete sequence
          Length = 173508

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     taataatcctatatggaatc 31
              ||||||||||||||||||||
Sbjct: 125176 taataatcctatatggaatc 125157
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 252     cgaagaaggcgtggaaaccg 271
               ||||||||||||||||||||
Sbjct: 2086317 cgaagaaggcgtggaaaccg 2086336
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>emb|AL953863.13| Zebrafish DNA sequence from clone CH211-113F11 in linkage group 14,
              complete sequence
          Length = 163814

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 80     cgattaattcactcaatgtacaaatatt 107
              ||||||||||||| |||| |||||||||
Sbjct: 112025 cgattaattcactgaatgcacaaatatt 111998
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>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative
             Cf-2, fertilization-independent endosperm proteins,
             hypothetical protein, putative non-LTR retroelement
             reverse transcriptase, OCL5 protein, tryptophan synthase
             beta-subunit, hypothetical proteins, putative AP
             endonuclease, putative RNA polymerase II complex component
             SRB7, putative beta-1,3-glucanase, hypothetical protein,
             TNP2-like protein, hypothetical protein, putative
             phosphate/phosphoenolpyruvate translocator, putative
             protein, hypothetical proteins, putative
             galactosyltransferase family, hypothetical protein,
             putative cytochrome P450 family, putative lipid transfer
             protein, putative photoreceptor-interacting protein, and
             hypothetical protein genes, complete cds; and hypothetical
             protein gene, partial cds
          Length = 202197

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 126   atttatttatctcctacataaatg 149
             ||||||||||||||||| ||||||
Sbjct: 59315 atttatttatctcctacttaaatg 59292
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>gb|AC155279.5| Mus musculus 6 BAC RP24-85A3 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 201663

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 194    gtatcactcactcctcttca 213
              ||||||||||||||||||||
Sbjct: 182329 gtatcactcactcctcttca 182310
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 252     cgaagaaggcgtggaaaccg 271
               ||||||||||||||||||||
Sbjct: 2839344 cgaagaaggcgtggaaaccg 2839363
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>gb|AY220982.1| Escherichia coli O86:B7 O-antigen gene cluster, complete sequence
          Length = 19288

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   cgaagaaggcgtggaaaccg 271
             ||||||||||||||||||||
Sbjct: 19180 cgaagaaggcgtggaaaccg 19161
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 252     cgaagaaggcgtggaaaccg 271
               ||||||||||||||||||||
Sbjct: 2769131 cgaagaaggcgtggaaaccg 2769150
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    cgaagaaggcgtggaaaccg 271
              ||||||||||||||||||||
Sbjct: 866615 cgaagaaggcgtggaaaccg 866634
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>dbj|D43637.1|ECORFBM Escherichia coli rfb gene cluster encoding phosphomannomutase,
             GDP-mannose pyrophosphorylase, mannosyltransferase, etc
          Length = 13316

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   cgaagaaggcgtggaaaccg 271
             ||||||||||||||||||||
Sbjct: 12417 cgaagaaggcgtggaaaccg 12398
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>dbj|AB010150.1| Escherichia coli O8 wb gene cluster, complete cds
          Length = 15295

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   cgaagaaggcgtggaaaccg 271
             ||||||||||||||||||||
Sbjct: 14071 cgaagaaggcgtggaaaccg 14052
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>dbj|AB008676.1| Escherichia coli 0157 DNA, map position at 46 min., complete cds
          Length = 31482

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   cgaagaaggcgtggaaaccg 271
             ||||||||||||||||||||
Sbjct: 19860 cgaagaaggcgtggaaaccg 19841


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,224,098
Number of Sequences: 3902068
Number of extensions: 5224098
Number of successful extensions: 101066
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100675
Number of HSP's gapped (non-prelim): 387
length of query: 675
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 652
effective length of database: 17,143,297,704
effective search space: 11177430103008
effective search space used: 11177430103008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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