| Clone Name | rbags28k14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196890.1| Oryza sativa (japonica cultivar-group) mitochondrial chaperonin-60 (OSJNBa0071K18.10), mRNA Length = 2024 Score = 190 bits (96), Expect = 3e-45 Identities = 159/180 (88%) Strand = Plus / Minus Query: 312 gcctcccattgccggggccgacttctcttccttgggtatctcaacgatgatggcttccgt 371 ||||||||| || || ||| |||||||||||| || ||||| |||||||||| |||||| Sbjct: 1704 gcctcccatcgctggcgcctccttctcttcctttgggatctctacgatgatggattccgt 1645 Query: 372 ggtagtcatcagagacgacacacttgcagcatcaaccagcgctgttctgatcactttaag 431 ||| ||||||||||| || || ||||||||||| |||| || |||||||||||||| || Sbjct: 1644 ggttgtcatcagagatgatacgcttgcagcatccaccaaggcagttctgatcacttttag 1585 Query: 432 tgggtcaatgataccagccttcaccatatccacatattcacctttggcagcatcatagcc 491 ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| Sbjct: 1584 tgggtcaatgataccagccttcaccatgtccacatattcacctttagccgcatcatagcc 1525
>dbj|AK119623.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-H08, full insert sequence Length = 2109 Score = 190 bits (96), Expect = 3e-45 Identities = 159/180 (88%) Strand = Plus / Minus Query: 312 gcctcccattgccggggccgacttctcttccttgggtatctcaacgatgatggcttccgt 371 ||||||||| || || ||| |||||||||||| || ||||| |||||||||| |||||| Sbjct: 1811 gcctcccatcgctggcgcctccttctcttcctttgggatctctacgatgatggattccgt 1752 Query: 372 ggtagtcatcagagacgacacacttgcagcatcaaccagcgctgttctgatcactttaag 431 ||| ||||||||||| || || ||||||||||| |||| || |||||||||||||| || Sbjct: 1751 ggttgtcatcagagatgatacgcttgcagcatccaccaaggcagttctgatcacttttag 1692 Query: 432 tgggtcaatgataccagccttcaccatatccacatattcacctttggcagcatcatagcc 491 ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| Sbjct: 1691 tgggtcaatgataccagccttcaccatgtccacatattcacctttagccgcatcatagcc 1632
>dbj|AK109517.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-109-A02, full insert sequence Length = 2796 Score = 190 bits (96), Expect = 3e-45 Identities = 159/180 (88%) Strand = Plus / Minus Query: 312 gcctcccattgccggggccgacttctcttccttgggtatctcaacgatgatggcttccgt 371 ||||||||| || || ||| |||||||||||| || ||||| |||||||||| |||||| Sbjct: 2531 gcctcccatcgctggcgcctccttctcttcctttgggatctctacgatgatggattccgt 2472 Query: 372 ggtagtcatcagagacgacacacttgcagcatcaaccagcgctgttctgatcactttaag 431 ||| ||||||||||| || || ||||||||||| |||| || |||||||||||||| || Sbjct: 2471 ggttgtcatcagagatgatacgcttgcagcatccaccaaggcagttctgatcacttttag 2412 Query: 432 tgggtcaatgataccagccttcaccatatccacatattcacctttggcagcatcatagcc 491 ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| Sbjct: 2411 tgggtcaatgataccagccttcaccatgtccacatattcacctttagccgcatcatagcc 2352
>dbj|AK069617.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019K12, full insert sequence Length = 2181 Score = 190 bits (96), Expect = 3e-45 Identities = 159/180 (88%) Strand = Plus / Minus Query: 312 gcctcccattgccggggccgacttctcttccttgggtatctcaacgatgatggcttccgt 371 ||||||||| || || ||| |||||||||||| || ||||| |||||||||| |||||| Sbjct: 1883 gcctcccatcgctggcgcctccttctcttcctttgggatctctacgatgatggattccgt 1824 Query: 372 ggtagtcatcagagacgacacacttgcagcatcaaccagcgctgttctgatcactttaag 431 ||| ||||||||||| || || ||||||||||| |||| || |||||||||||||| || Sbjct: 1823 ggttgtcatcagagatgatacgcttgcagcatccaccaaggcagttctgatcacttttag 1764 Query: 432 tgggtcaatgataccagccttcaccatatccacatattcacctttggcagcatcatagcc 491 ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| Sbjct: 1763 tgggtcaatgataccagccttcaccatgtccacatattcacctttagccgcatcatagcc 1704
>dbj|AK073999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073C08, full insert sequence Length = 2223 Score = 168 bits (85), Expect = 1e-38 Identities = 136/153 (88%) Strand = Plus / Minus Query: 336 ctcttccttgggtatctcaacgatgatggcttccgtggtagtcatcagagacgacacact 395 |||||||||||| |||||||| || || | ||| ||||||||||| ||||| |||||||| Sbjct: 1783 ctcttccttggggatctcaacaataatagattctgtggtagtcattagagaggacacact 1724 Query: 396 tgcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgataccagccttcac 455 ||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||| |||||| Sbjct: 1723 tgcagcatccaccagagctgttctgataacttttagtgggtcaatgataccagacttcac 1664 Query: 456 catatccacatattcacctttggcagcatcata 488 ||| || || ||||||||||| ||||||||||| Sbjct: 1663 catgtcaacgtattcacctttagcagcatcata 1631
>emb|Z12114.1|ZMCPNAGA Z.mays CPNA gene encoding mitochondrial chaperonin-60 Length = 2247 Score = 145 bits (73), Expect = 2e-31 Identities = 133/153 (86%) Strand = Plus / Minus Query: 336 ctcttccttgggtatctcaacgatgatggcttccgtggtagtcatcagagacgacacact 395 |||||||||||||||||| || || |||| ||||||||| |||||||| ||||||||||| Sbjct: 1873 ctcttccttgggtatctctacaattatggattccgtggttgtcatcagggacgacacact 1814 Query: 396 tgcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgataccagccttcac 455 |||||||| |||| || |||||||| || || || |||||||||||||| | |||||| Sbjct: 1813 agcagcatccaccaaagcagttctgataacctttagcgggtcaatgataccggtcttcac 1754 Query: 456 catatccacatattcacctttggcagcatcata 488 ||| || |||||||||||||| ||||||||||| Sbjct: 1753 catgtcaacatattcacctttagcagcatcata 1721
>gb|BT016176.1| Zea mays clone Contig9 mRNA sequence Length = 885 Score = 137 bits (69), Expect = 4e-29 Identities = 132/153 (86%) Strand = Plus / Plus Query: 336 ctcttccttgggtatctcaacgatgatggcttccgtggtagtcatcagagacgacacact 395 |||||||||||| ||||| || || |||| ||||||||| |||||||| ||||||||||| Sbjct: 449 ctcttccttgggaatctctacaattatggattccgtggttgtcatcagggacgacacact 508 Query: 396 tgcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgataccagccttcac 455 |||||||| |||| || |||||||| || || || |||||||||||||| | |||||| Sbjct: 509 agcagcatccaccaaagcagttctgataacctttagcgggtcaatgataccggtcttcac 568 Query: 456 catatccacatattcacctttggcagcatcata 488 ||| || |||||||||||||| ||||||||||| Sbjct: 569 catgtcaacatattcacctttagcagcatcata 601
>emb|Z11546.1|ZMCHHSP60 Z.mays mRNA for mitochondrial chaperonin hsp60 Length = 2138 Score = 137 bits (69), Expect = 4e-29 Identities = 132/153 (86%) Strand = Plus / Minus Query: 336 ctcttccttgggtatctcaacgatgatggcttccgtggtagtcatcagagacgacacact 395 |||||||||||| ||||| || || |||| ||||||||| |||||||| ||||||||||| Sbjct: 1745 ctcttccttgggaatctctacaattatggattccgtggttgtcatcagggacgacacact 1686 Query: 396 tgcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgataccagccttcac 455 |||||||| |||| || |||||||| || || || |||||||||||||| | |||||| Sbjct: 1685 agcagcatccaccaaagcagttctgataacctttagcgggtcaatgataccggtcttcac 1626 Query: 456 catatccacatattcacctttggcagcatcata 488 ||| || |||||||||||||| ||||||||||| Sbjct: 1625 catgtcaacatattcacctttagcagcatcata 1593
>emb|BX825898.1|CNS0A57I Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL70ZG05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 943 Score = 137 bits (69), Expect = 4e-29 Identities = 111/125 (88%) Strand = Plus / Minus Query: 364 gcttccgtggtagtcatcagagacgacacacttgcagcatcaaccagcgctgttctgatc 423 |||||||| || |||| || ||| |||||||| ||||||||||||| |||||||||||| Sbjct: 664 gcttccgttgtcgtcaacaaagatgacacactcgcagcatcaaccaaagctgttctgatc 605 Query: 424 actttaagtgggtcaatgataccagccttcaccatatccacatattcacctttggcagca 483 ||||| || ||||| ||||| ||||| |||||||||||||||||||||||||| |||||| Sbjct: 604 actttcagagggtctatgattccagctttcaccatatccacatattcacctttagcagca 545 Query: 484 tcata 488 ||||| Sbjct: 544 tcata 540
>gb|BT023997.1| Zea mays clone EL01N0314G02 mRNA sequence Length = 2188 Score = 137 bits (69), Expect = 4e-29 Identities = 132/153 (86%) Strand = Plus / Minus Query: 336 ctcttccttgggtatctcaacgatgatggcttccgtggtagtcatcagagacgacacact 395 |||||||||||| ||||| || || |||| ||||||||| |||||||| ||||||||||| Sbjct: 1796 ctcttccttgggaatctctacaattatggattccgtggttgtcatcagggacgacacact 1737 Query: 396 tgcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgataccagccttcac 455 |||||||| |||| || |||||||| || || || |||||||||||||| | |||||| Sbjct: 1736 agcagcatccaccaaagcagttctgataacctttagcgggtcaatgataccggtcttcac 1677 Query: 456 catatccacatattcacctttggcagcatcata 488 ||| || |||||||||||||| ||||||||||| Sbjct: 1676 catgtcaacatattcacctttagcagcatcata 1644
>gb|AY109623.1| Zea mays CL2221_1 mRNA sequence Length = 2265 Score = 137 bits (69), Expect = 4e-29 Identities = 132/153 (86%) Strand = Plus / Minus Query: 336 ctcttccttgggtatctcaacgatgatggcttccgtggtagtcatcagagacgacacact 395 |||||||||||| ||||| || || |||| ||||||||| |||||||| ||||||||||| Sbjct: 1873 ctcttccttgggaatctctacaattatggattccgtggttgtcatcagggacgacacact 1814 Query: 396 tgcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgataccagccttcac 455 |||||||| |||| || |||||||| || || || |||||||||||||| | |||||| Sbjct: 1813 agcagcatccaccaaagcagttctgataacctttagcgggtcaatgataccggtcttcac 1754 Query: 456 catatccacatattcacctttggcagcatcata 488 ||| || |||||||||||||| ||||||||||| Sbjct: 1753 catgtcaacatattcacctttagcagcatcata 1721
>ref|NM_113304.3| Arabidopsis thaliana HSP60; ATP binding / protein binding AT3G23990 (HSP60) mRNA, complete cds Length = 2119 Score = 129 bits (65), Expect = 9e-27 Identities = 110/125 (88%) Strand = Plus / Minus Query: 364 gcttccgtggtagtcatcagagacgacacacttgcagcatcaaccagcgctgttctgatc 423 |||||||| || |||| || ||| |||||||| ||||||||||||| ||||| |||||| Sbjct: 1734 gcttccgttgtcgtcaacaaagatgacacactcgcagcatcaaccaaagctgtcctgatc 1675 Query: 424 actttaagtgggtcaatgataccagccttcaccatatccacatattcacctttggcagca 483 ||||| || ||||| ||||| ||||| |||||||||||||||||||||||||| |||||| Sbjct: 1674 actttcagagggtctatgattccagctttcaccatatccacatattcacctttagcagca 1615 Query: 484 tcata 488 ||||| Sbjct: 1614 tcata 1610
>gb|BT010398.1| Arabidopsis thaliana At3g23990 mRNA, complete cds Length = 1734 Score = 129 bits (65), Expect = 9e-27 Identities = 110/125 (88%) Strand = Plus / Minus Query: 364 gcttccgtggtagtcatcagagacgacacacttgcagcatcaaccagcgctgttctgatc 423 |||||||| || |||| || ||| |||||||| ||||||||||||| ||||| |||||| Sbjct: 1649 gcttccgttgtcgtcaacaaagatgacacactcgcagcatcaaccaaagctgtcctgatc 1590 Query: 424 actttaagtgggtcaatgataccagccttcaccatatccacatattcacctttggcagca 483 ||||| || ||||| ||||| ||||| |||||||||||||||||||||||||| |||||| Sbjct: 1589 actttcagagggtctatgattccagctttcaccatatccacatattcacctttagcagca 1530 Query: 484 tcata 488 ||||| Sbjct: 1529 tcata 1525
>emb|Z11547.1|ATCHHSP60 A.thaliana mRNA for mitochondrial chaperonin hsp60 Length = 1998 Score = 129 bits (65), Expect = 9e-27 Identities = 110/125 (88%) Strand = Plus / Minus Query: 364 gcttccgtggtagtcatcagagacgacacacttgcagcatcaaccagcgctgttctgatc 423 |||||||| || |||| || ||| |||||||| ||||||||||||| ||||| |||||| Sbjct: 1723 gcttccgttgtcgtcaacaaagatgacacactcgcagcatcaaccaaagctgtcctgatc 1664 Query: 424 actttaagtgggtcaatgataccagccttcaccatatccacatattcacctttggcagca 483 ||||| || ||||| ||||| ||||| |||||||||||||||||||||||||| |||||| Sbjct: 1663 actttcagagggtctatgattccagctttcaccatatccacatattcacctttagcagca 1604 Query: 484 tcata 488 ||||| Sbjct: 1603 tcata 1599
>gb|AY099594.1| Arabidopsis thaliana mitochondrial chaperonin hsp60 (At3g23990) mRNA, complete cds Length = 1994 Score = 129 bits (65), Expect = 9e-27 Identities = 110/125 (88%) Strand = Plus / Minus Query: 364 gcttccgtggtagtcatcagagacgacacacttgcagcatcaaccagcgctgttctgatc 423 |||||||| || |||| || ||| |||||||| ||||||||||||| ||||| |||||| Sbjct: 1734 gcttccgttgtcgtcaacaaagatgacacactcgcagcatcaaccaaagctgtcctgatc 1675 Query: 424 actttaagtgggtcaatgataccagccttcaccatatccacatattcacctttggcagca 483 ||||| || ||||| ||||| ||||| |||||||||||||||||||||||||| |||||| Sbjct: 1674 actttcagagggtctatgattccagctttcaccatatccacatattcacctttagcagca 1615 Query: 484 tcata 488 ||||| Sbjct: 1614 tcata 1610
>gb|BT017311.1| Zea mays clone EL01N0317H06.c mRNA sequence Length = 1194 Score = 121 bits (61), Expect = 2e-24 Identities = 130/153 (84%) Strand = Plus / Minus Query: 336 ctcttccttgggtatctcaacgatgatggcttccgtggtagtcatcagagacgacacact 395 |||||||||||| ||||| || || |||| ||||||||| |||||||| ||||||||||| Sbjct: 890 ctcttccttggggatctctacaattatggattccgtggtggtcatcagggacgacacact 831 Query: 396 tgcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgataccagccttcac 455 |||||||| |||| || |||||||| || || || || |||||||||||||||||||| Sbjct: 830 agcagcatccaccaatgcagttctgatgacctttagcggatcaatgataccagccttcac 771 Query: 456 catatccacatattcacctttggcagcatcata 488 ||| || || ||||| |||| ||||||||||| Sbjct: 770 catgtcaacgtattcgtctttagcagcatcata 738
>emb|Z12115.1|ZMCPNAGB Z.mays CPNB gene encoding mitochondrial chaperonin-60 Length = 2104 Score = 121 bits (61), Expect = 2e-24 Identities = 130/153 (84%) Strand = Plus / Minus Query: 336 ctcttccttgggtatctcaacgatgatggcttccgtggtagtcatcagagacgacacact 395 |||||||||||| ||||| || || |||| ||||||||| |||||||| ||||||||||| Sbjct: 1729 ctcttccttggggatctctacaattatggattccgtggtggtcatcagggacgacacact 1670 Query: 396 tgcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgataccagccttcac 455 |||||||| |||| || |||||||| || || || || |||||||||||||||||||| Sbjct: 1669 agcagcatccaccaatgcagttctgatgacctttagcggatcaatgataccagccttcac 1610 Query: 456 catatccacatattcacctttggcagcatcata 488 ||| || || ||||| |||| ||||||||||| Sbjct: 1609 catgtcaacgtattcgtctttagcagcatcata 1577
>gb|L21006.1|MZECPN60X Zea mays mitochondrial chaperonin 60 (mtcpn60II) mRNA, complete cds Length = 2139 Score = 121 bits (61), Expect = 2e-24 Identities = 130/153 (84%) Strand = Plus / Minus Query: 336 ctcttccttgggtatctcaacgatgatggcttccgtggtagtcatcagagacgacacact 395 |||||||||||| ||||| || || |||| ||||||||| |||||||| ||||||||||| Sbjct: 1837 ctcttccttggggatctctacaattatggattccgtggtggtcatcagggacgacacact 1778 Query: 396 tgcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgataccagccttcac 455 |||||||| |||| || |||||||| || || || || |||||||||||||||||||| Sbjct: 1777 agcagcatccaccaatgcagttctgatgacctttagcggatcaatgataccagccttcac 1718 Query: 456 catatccacatattcacctttggcagcatcata 488 ||| || || ||||| |||| ||||||||||| Sbjct: 1717 catgtcaacgtattcgtctttagcagcatcata 1685
>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete sequence Length = 149758 Score = 113 bits (57), Expect = 6e-22 Identities = 75/81 (92%) Strand = Plus / Plus Query: 394 cttgcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgataccagccttc 453 ||||||||||| |||| || |||||||||||||| |||||||||||||||||||||||| Sbjct: 121569 cttgcagcatccaccaaggcagttctgatcacttttagtgggtcaatgataccagccttc 121628 Query: 454 accatatccacatattcacct 474 ||||| ||||||||||||||| Sbjct: 121629 accatgtccacatattcacct 121649 Score = 69.9 bits (35), Expect = 7e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 312 gcctcccattgccggggccgacttctcttccttgggtatctcaacgatgatggcttccgt 371 ||||||||| || || ||| |||||||||||| || ||||| |||||||||| |||||| Sbjct: 121300 gcctcccatcgctggcgcctccttctcttcctttgggatctctacgatgatggattccgt 121359 Query: 372 ggtagtcatcagaga 386 ||| ||||||||||| Sbjct: 121360 ggttgtcatcagaga 121374
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 113 bits (57), Expect = 6e-22 Identities = 75/81 (92%) Strand = Plus / Minus Query: 394 cttgcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgataccagccttc 453 ||||||||||| |||| || |||||||||||||| |||||||||||||||||||||||| Sbjct: 16538673 cttgcagcatccaccaaggcagttctgatcacttttagtgggtcaatgataccagccttc 16538614 Query: 454 accatatccacatattcacct 474 ||||| ||||||||||||||| Sbjct: 16538613 accatgtccacatattcacct 16538593 Score = 69.9 bits (35), Expect = 7e-09 Identities = 65/75 (86%) Strand = Plus / Minus Query: 312 gcctcccattgccggggccgacttctcttccttgggtatctcaacgatgatggcttccgt 371 ||||||||| || || ||| |||||||||||| || ||||| |||||||||| |||||| Sbjct: 16538942 gcctcccatcgctggcgcctccttctcttcctttgggatctctacgatgatggattccgt 16538883 Query: 372 ggtagtcatcagaga 386 ||| ||||||||||| Sbjct: 16538882 ggttgtcatcagaga 16538868
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 113 bits (57), Expect = 6e-22 Identities = 75/81 (92%) Strand = Plus / Minus Query: 394 cttgcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgataccagccttc 453 ||||||||||| |||| || |||||||||||||| |||||||||||||||||||||||| Sbjct: 16546914 cttgcagcatccaccaaggcagttctgatcacttttagtgggtcaatgataccagccttc 16546855 Query: 454 accatatccacatattcacct 474 ||||| ||||||||||||||| Sbjct: 16546854 accatgtccacatattcacct 16546834 Score = 69.9 bits (35), Expect = 7e-09 Identities = 65/75 (86%) Strand = Plus / Minus Query: 312 gcctcccattgccggggccgacttctcttccttgggtatctcaacgatgatggcttccgt 371 ||||||||| || || ||| |||||||||||| || ||||| |||||||||| |||||| Sbjct: 16547183 gcctcccatcgctggcgcctccttctcttcctttgggatctctacgatgatggattccgt 16547124 Query: 372 ggtagtcatcagaga 386 ||| ||||||||||| Sbjct: 16547123 ggttgtcatcagaga 16547109
>emb|Z27165.1|BNMTCHA B.napus mRNA for mitochondrial chaperonin Length = 1952 Score = 105 bits (53), Expect = 1e-19 Identities = 107/125 (85%) Strand = Plus / Minus Query: 364 gcttccgtggtagtcatcagagacgacacacttgcagcatcaaccagcgctgttctgatc 423 |||||||| || |||| || |||||| ||||||||||||||||||| || ||||||||| Sbjct: 1700 gcttccgttgttgtcaacaaagacgagacacttgcagcatcaaccaatgcggttctgatc 1641 Query: 424 actttaagtgggtcaatgataccagccttcaccatatccacatattcacctttggcagca 483 ||||| | ||||| || ||||||| |||||||||||| || ||||| ||||| |||||| Sbjct: 1640 actttcacagggtcgataataccagacttcaccatatcaacgtattctcctttagcagca 1581 Query: 484 tcata 488 ||||| Sbjct: 1580 tcata 1576
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 97.6 bits (49), Expect = 3e-17 Identities = 73/81 (90%) Strand = Plus / Plus Query: 394 cttgcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgataccagccttc 453 ||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||| |||| Sbjct: 2383496 cttgcagcatccaccagagctgttctgataacttttagtgggtcaatgataccagacttc 2383555 Query: 454 accatatccacatattcacct 474 ||||| || || ||||||||| Sbjct: 2383556 accatgtcaacgtattcacct 2383576 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 336 ctcttccttgggtatctcaacgatgatggcttccgtggtagtcatcagagacgacacact 395 |||||||||||| |||||||| || || | ||| ||||||||||| ||||| |||||||| Sbjct: 2383131 ctcttccttggggatctcaacaataatagattctgtggtagtcattagagaggacacact 2383190
>gb|AC122149.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0083D24, complete sequence Length = 150503 Score = 97.6 bits (49), Expect = 3e-17 Identities = 73/81 (90%) Strand = Plus / Plus Query: 394 cttgcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgataccagccttc 453 ||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||| |||| Sbjct: 100338 cttgcagcatccaccagagctgttctgataacttttagtgggtcaatgataccagacttc 100397 Query: 454 accatatccacatattcacct 474 ||||| || || ||||||||| Sbjct: 100398 accatgtcaacgtattcacct 100418 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 336 ctcttccttgggtatctcaacgatgatggcttccgtggtagtcatcagagacgacacact 395 |||||||||||| |||||||| || || | ||| ||||||||||| ||||| |||||||| Sbjct: 99973 ctcttccttggggatctcaacaataatagattctgtggtagtcattagagaggacacact 100032
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 97.6 bits (49), Expect = 3e-17 Identities = 73/81 (90%) Strand = Plus / Plus Query: 394 cttgcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgataccagccttc 453 ||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||| |||| Sbjct: 2383606 cttgcagcatccaccagagctgttctgataacttttagtgggtcaatgataccagacttc 2383665 Query: 454 accatatccacatattcacct 474 ||||| || || ||||||||| Sbjct: 2383666 accatgtcaacgtattcacct 2383686 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 336 ctcttccttgggtatctcaacgatgatggcttccgtggtagtcatcagagacgacacact 395 |||||||||||| |||||||| || || | ||| ||||||||||| ||||| |||||||| Sbjct: 2383241 ctcttccttggggatctcaacaataatagattctgtggtagtcattagagaggacacact 2383300
>dbj|AP001297.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F14O13 Length = 106203 Score = 91.7 bits (46), Expect = 2e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 397 gcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgataccagccttcacc 456 ||||||||||||| ||||| ||||||||||| || ||||| ||||| ||||| |||||| Sbjct: 74911 gcagcatcaaccaaagctgtcctgatcactttcagagggtctatgattccagctttcacc 74852 Query: 457 atatccacatattcacct 474 |||||||||||||||||| Sbjct: 74851 atatccacatattcacct 74834 Score = 44.1 bits (22), Expect = 0.43 Identities = 40/46 (86%) Strand = Plus / Minus Query: 404 caaccagcgctgttctgatcactttaagtgggtcaatgataccagc 449 ||||||| || || ||||||||||| || ||||||||||| ||||| Sbjct: 78508 caaccagagccgtcctgatcactttcagagggtcaatgattccagc 78463
>ref|NM_179872.1| Arabidopsis thaliana ATP binding / protein binding AT2G33210 mRNA, complete cds Length = 2094 Score = 89.7 bits (45), Expect = 8e-15 Identities = 105/125 (84%) Strand = Plus / Minus Query: 364 gcttccgtggtagtcatcagagacgacacacttgcagcatcaaccagcgctgttctgatc 423 |||||||| || |||| || |||||| ||||||||||||||||| | || ||||||||| Sbjct: 1804 gcttccgtcgttgtcaacaaagacgaaacacttgcagcatcaactaatgcggttctgatc 1745 Query: 424 actttaagtgggtcaatgataccagccttcaccatatccacatattcacctttggcagca 483 ||||| | || || || ||||||||||| | ||| ||||||||||| ||||| |||||| Sbjct: 1744 actttcaaaggatcgataataccagcctttatcatgtccacatattctcctttagcagca 1685 Query: 484 tcata 488 ||||| Sbjct: 1684 tcata 1680
>gb|BT000103.1| Arabidopsis thaliana mitochondrial chaperonin HSP60 (At2g33210) mRNA, complete cds Length = 1799 Score = 89.7 bits (45), Expect = 8e-15 Identities = 105/125 (84%) Strand = Plus / Minus Query: 364 gcttccgtggtagtcatcagagacgacacacttgcagcatcaaccagcgctgttctgatc 423 |||||||| || |||| || |||||| ||||||||||||||||| | || ||||||||| Sbjct: 1652 gcttccgtcgttgtcaacaaagacgaaacacttgcagcatcaactaatgcggttctgatc 1593 Query: 424 actttaagtgggtcaatgataccagccttcaccatatccacatattcacctttggcagca 483 ||||| | || || || ||||||||||| | ||| ||||||||||| ||||| |||||| Sbjct: 1592 actttcaaaggatcgataataccagcctttatcatgtccacatattctcctttagcagca 1533 Query: 484 tcata 488 ||||| Sbjct: 1532 tcata 1528
>gb|AY136360.1| Arabidopsis thaliana mitochondrial chaperonin HSP60 (At2g33210) mRNA, complete cds Length = 1982 Score = 89.7 bits (45), Expect = 8e-15 Identities = 105/125 (84%) Strand = Plus / Minus Query: 364 gcttccgtggtagtcatcagagacgacacacttgcagcatcaaccagcgctgttctgatc 423 |||||||| || |||| || |||||| ||||||||||||||||| | || ||||||||| Sbjct: 1692 gcttccgtcgttgtcaacaaagacgaaacacttgcagcatcaactaatgcggttctgatc 1633 Query: 424 actttaagtgggtcaatgataccagccttcaccatatccacatattcacctttggcagca 483 ||||| | || || || ||||||||||| | ||| ||||||||||| ||||| |||||| Sbjct: 1632 actttcaaaggatcgataataccagcctttatcatgtccacatattctcctttagcagca 1573 Query: 484 tcata 488 ||||| Sbjct: 1572 tcata 1568
>dbj|AK175415.1| Arabidopsis thaliana mRNA for mitochondrial chaperonin (HSP60), complete cds, clone: RAFL21-85-D12 Length = 2089 Score = 89.7 bits (45), Expect = 8e-15 Identities = 105/125 (84%) Strand = Plus / Minus Query: 364 gcttccgtggtagtcatcagagacgacacacttgcagcatcaaccagcgctgttctgatc 423 |||||||| || |||| || |||||| ||||||||||||||||| | || ||||||||| Sbjct: 1815 gcttccgtcgttgtcaacaaagacgaaacacttgcagcatcaactaatgcggttctgatc 1756 Query: 424 actttaagtgggtcaatgataccagccttcaccatatccacatattcacctttggcagca 483 ||||| | || || || ||||||||||| | ||| ||||||||||| ||||| |||||| Sbjct: 1755 actttcaaaggatcgataataccagcctttatcatgtccacatattctcctttagcagca 1696 Query: 484 tcata 488 ||||| Sbjct: 1695 tcata 1691
>emb|X70868.1|CSMCPN602 Cucurbita sp. pMCPN60-2 mRNA for chaperonin 60 Length = 2217 Score = 83.8 bits (42), Expect = 5e-13 Identities = 105/126 (83%) Strand = Plus / Minus Query: 360 gatggcttccgtggtagtcatcagagacgacacacttgcagcatcaaccagcgctgttct 419 ||||||||| || || ||||||| ||| || || || || ||||| ||||| || ||||| Sbjct: 1801 gatggcttctgtagttgtcatcaaagaggaaacgctagcggcatcgaccagtgcagttct 1742 Query: 420 gatcactttaagtgggtcaatgataccagccttcaccatatccacatattcacctttggc 479 || |||||||| || |||||||| ||||| || | ||||||||||||||||||||| || Sbjct: 1741 aattactttaagaggatcaatgatgccagctttgatcatatccacatattcaccttttgc 1682 Query: 480 agcatc 485 |||||| Sbjct: 1681 agcatc 1676
>gb|BT012804.1| Lycopersicon esculentum clone 113820R, mRNA sequence Length = 2008 Score = 79.8 bits (40), Expect = 8e-12 Identities = 127/156 (81%) Strand = Plus / Minus Query: 333 cttctcttccttgggtatctcaacgatgatggcttccgtggtagtcatcagagacgacac 392 |||||| |||||||| | ||||||||| | ||||| || ||||| | | ||||||||| Sbjct: 1763 cttctcgtccttgggaagctcaacgataacagcttcagttgtagttaataaagacgacac 1704 Query: 393 acttgcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgataccagcctt 452 ||| ||||||||||||| || || || || ||||| | ||| |||||||| || || || Sbjct: 1703 actagcagcatcaaccaaggccgtcctaattactttcaatggatcaatgattcctgcttt 1644 Query: 453 caccatatccacatattcacctttggcagcatcata 488 ||||| || |||||||||||||| ||||||||||| Sbjct: 1643 taccatgtcaacatattcaccttttgcagcatcata 1608
>ref|NM_112240.2| Arabidopsis thaliana ATP binding / protein binding AT3G13860 mRNA, complete cds Length = 2022 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 415 gttctgatcactttaagtgggtcaatgataccagccttcaccatatccacatattcacct 474 ||||||||||| || | |||||| ||||| ||||| ||||||||||||||||||| |||| Sbjct: 1714 gttctgatcaccttgactgggtctatgattccagctttcaccatatccacatatttacct 1655 Query: 475 ttggcagcatc 485 ||||| ||||| Sbjct: 1654 ttggctgcatc 1644
>gb|BT015923.1| Arabidopsis thaliana At3g13860 gene, complete cds Length = 1719 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 415 gttctgatcactttaagtgggtcaatgataccagccttcaccatatccacatattcacct 474 ||||||||||| || | |||||| ||||| ||||| ||||||||||||||||||| |||| Sbjct: 1598 gttctgatcaccttgactgggtctatgattccagctttcaccatatccacatatttacct 1539 Query: 475 ttggcagcatc 485 ||||| ||||| Sbjct: 1538 ttggctgcatc 1528
>gb|BT013503.1| Lycopersicon esculentum clone 132191F, mRNA sequence Length = 2115 Score = 77.8 bits (39), Expect = 3e-11 Identities = 90/107 (84%) Strand = Plus / Minus Query: 382 agagacgacacacttgcagcatcaaccagcgctgttctgatcactttaagtgggtcaatg 441 |||||||| ||||| |||||||| |||| ||||| ||||||||||| | ||| || ||| Sbjct: 1761 agagacgagacactggcagcatcgaccaaagctgtcctgatcactttcactggatcgatg 1702 Query: 442 ataccagccttcaccatatccacatattcacctttggcagcatcata 488 || || ||||| | |||||| ||||||||||| ||||| |||||||| Sbjct: 1701 attcctgcctttatcatatctacatattcacccttggccgcatcata 1655
>gb|AY094453.1| Arabidopsis thaliana AT3g13860/MCP4_7 mRNA, complete cds Length = 1975 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 415 gttctgatcactttaagtgggtcaatgataccagccttcaccatatccacatattcacct 474 ||||||||||| || | |||||| ||||| ||||| ||||||||||||||||||| |||| Sbjct: 1714 gttctgatcaccttgactgggtctatgattccagctttcaccatatccacatatttacct 1655 Query: 475 ttggcagcatc 485 ||||| ||||| Sbjct: 1654 ttggctgcatc 1644
>gb|AY056782.1| Arabidopsis thaliana AT3g13860/MCP4_7 mRNA, complete cds Length = 1974 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 415 gttctgatcactttaagtgggtcaatgataccagccttcaccatatccacatattcacct 474 ||||||||||| || | |||||| ||||| ||||| ||||||||||||||||||| |||| Sbjct: 1713 gttctgatcaccttgactgggtctatgattccagctttcaccatatccacatatttacct 1654 Query: 475 ttggcagcatc 485 ||||| ||||| Sbjct: 1653 ttggctgcatc 1643
>gb|AY089145.1| Arabidopsis thaliana clone 38045 mRNA, complete sequence Length = 1925 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 415 gttctgatcactttaagtgggtcaatgataccagccttcaccatatccacatattcacct 474 ||||||||||| || | |||||| ||||| ||||| ||||||||||||||||||| |||| Sbjct: 1666 gttctgatcaccttgactgggtctatgattccagctttcaccatatccacatatttacct 1607 Query: 475 ttggcagcatc 485 ||||| ||||| Sbjct: 1606 ttggctgcatc 1596
>emb|X70867.1|CSMCPN601 Cucurbita sp. pMCPN60-1 mRNA for chaperonin 60 Length = 2023 Score = 73.8 bits (37), Expect = 5e-10 Identities = 94/113 (83%) Strand = Plus / Minus Query: 376 gtcatcagagacgacacacttgcagcatcaaccagcgctgttctgatcactttaagtggg 435 ||||||| ||| || |||||||| || ||||| || || |||||||| ||||| || ||| Sbjct: 1670 gtcatcaaagaggaaacacttgcggcgtcaactagtgcagttctgattactttcagaggg 1611 Query: 436 tcaatgataccagccttcaccatatccacatattcacctttggcagcatcata 488 || || || ||||| || |||||||| ||||||||||| || ||||||||||| Sbjct: 1610 tcgataatgccagctttgaccatatctacatattcaccctttgcagcatcata 1558
>dbj|AB028610.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MCP4 Length = 38810 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 415 gttctgatcactttaagtgggtcaatgataccagccttcaccatatccacatattcacct 474 ||||||||||| || | |||||| ||||| ||||| ||||||||||||||||||| |||| Sbjct: 26038 gttctgatcaccttgactgggtctatgattccagctttcaccatatccacatatttacct 26097 Query: 475 ttggca 480 ||||| Sbjct: 26098 atggca 26103
>gb|L21008.1|MZECPN60B Corn nuclear-encoded mitochondrial chaperonin 60 (cpn60II) gene, complete cds Length = 7905 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 336 ctcttccttgggtatctcaacgatgatggcttccgtggtagtcatcagagacgacacact 395 |||||||||||| ||||| || || |||| ||||||||| |||||||| ||||||||||| Sbjct: 7081 ctcttccttggggatctctacaattatggattccgtggtggtcatcagggacgacacact 7022 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 397 gcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgataccagccttcacc 456 |||||||| |||| || |||||||| || || || || ||||||||||||||||||||| Sbjct: 6775 gcagcatccaccaatgcagttctgatgacctttagcggatcaatgataccagccttcacc 6716 Query: 457 at 458 || Sbjct: 6715 at 6714
>gb|L21007.1|MZECPN60A Corn nuclear-encoded mitochondrial chaperonin 60 (cpn60I) gene, complete cds Length = 6575 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 336 ctcttccttgggtatctcaacgatgatggcttccgtggtagtcatcagagacgacacact 395 |||||||||||| ||||| || || |||| ||||||||| |||||||| ||||||||||| Sbjct: 5932 ctcttccttgggaatctctacaattatggattccgtggttgtcatcagggacgacacact 5873 Score = 60.0 bits (30), Expect = 7e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 397 gcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgataccagccttcacc 456 |||||||| |||| || |||||||| || || || |||||||||||||| | ||||||| Sbjct: 5668 gcagcatccaccaaagcagttctgataacctttagcgggtcaatgataccggtcttcacc 5609 Query: 457 atatccacatattcacct 474 || || |||||||||||| Sbjct: 5608 atgtcaacatattcacct 5591
>gb|AC149482.1| Populus trichocarpa clone Pop1-69G3, complete sequence Length = 107795 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 397 gcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgataccagccttcacc 456 |||||||| |||| || ||||| || ||||| || |||||||| || ||||| |||||| Sbjct: 7270 gcagcatcgaccaaagcagttctaattactttcagcgggtcaataatgccagctttcacc 7211 Query: 457 atatccacatattca 471 ||||| ||||||||| Sbjct: 7210 atatcaacatattca 7196
>gb|AF489695.1| Prunus dulcis heat shock protein 60 (HSP60) mRNA, partial cds Length = 1887 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Minus Query: 388 gacacacttgcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgatacca 447 ||||| ||||| ||||| |||| || |||||||| ||||| | ||| |||||||| || Sbjct: 1539 gacacgcttgcggcatcgaccaaggcggttctgatgactttcaatggatcaatgatccct 1480 Query: 448 gccttcaccatatccacatattcacctttggcagcatc 485 ||||| | ||| || |||||||||||||| || ||||| Sbjct: 1479 gcctttatcatgtctacatattcaccttttgctgcatc 1442
>gb|AC002334.3| Arabidopsis thaliana chromosome 2 clone F25I18 map TEn5, complete sequence Length = 93158 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Minus Query: 394 cttgcagcatcaaccagcgctgttctgatcactttaagtgggtcaatgataccagccttc 453 |||||||||||||| | || |||||||||||||| | || || || ||||||||||| Sbjct: 25155 cttgcagcatcaactaatgcggttctgatcactttcaaaggatcgataataccagccttt 25096 Query: 454 accatatccacatattc 470 | ||| ||||||||||| Sbjct: 25095 atcatgtccacatattc 25079
>gb|AY346155.1| Streptococcus bovis strain ATCC 33317 GroEL (groEL) gene, partial cds Length = 695 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 424 actttaagtgggtcaatgataccagc 449 ||||||| |||||||||||||||||| Sbjct: 605 actttaactgggtcaatgataccagc 580
>gb|AE009036.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 62 of 256 of the complete sequence Length = 10029 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 285 ttagaactccatcccgcccatgccgccgcc 314 |||||| ||||| ||||||||||||||||| Sbjct: 5543 ttagaagtccatgccgcccatgccgccgcc 5572 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 233 ttagaactccatcccgcccatgccgccgcc 262 |||||| ||||| ||||||||||||||||| Sbjct: 5543 ttagaagtccatgccgcccatgccgccgcc 5572
>emb|CR932188.1|CNS0KYH2 Paramecium tetraurelia, hsp60, putative, complete gene Length = 2017 Score = 44.1 bits (22), Expect = 0.43 Identities = 34/38 (89%) Strand = Plus / Minus Query: 432 tgggtcaatgataccagccttcaccatatccacatatt 469 ||||||||||||||||||||| | ||||| ||||||| Sbjct: 1741 tgggtcaatgataccagccttgatcatattgacatatt 1704
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 233 ttagaactccatcccgcccatgccgccgcc 262 |||||| ||||| ||||||||||||||||| Sbjct: 2852428 ttagaaatccatgccgcccatgccgccgcc 2852399 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 285 ttagaactccatcccgcccatgccgccgcc 314 |||||| ||||| ||||||||||||||||| Sbjct: 2852428 ttagaaatccatgccgcccatgccgccgcc 2852399
>ref|XM_790112.1| PREDICTED: Strongylocentrotus purpuratus similar to heat shock 60 kD protein 1 (LOC590510), mRNA Length = 3181 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 436 tcaatgataccagccttcaccatatc 461 ||||||||||||||||| |||||||| Sbjct: 1577 tcaatgataccagccttgaccatatc 1552
>emb|X68263.1|ATGROEOP A.tumefaciens groE operon DNA Length = 2515 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 233 ttagaactccatcccgcccatgccgccgcc 262 |||||| ||||| ||||||||||||||||| Sbjct: 2499 ttagaagtccatgccgcccatgccgccgcc 2470 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 285 ttagaactccatcccgcccatgccgccgcc 314 |||||| ||||| ||||||||||||||||| Sbjct: 2499 ttagaagtccatgccgcccatgccgccgcc 2470
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 233 ttagaactccatcccgcccatgccgccgcc 262 |||||| ||||| ||||||||||||||||| Sbjct: 344415 ttagaaatccatgccgcccatgccgccgcc 344444 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 285 ttagaactccatcccgcccatgccgccgcc 314 |||||| ||||| ||||||||||||||||| Sbjct: 344415 ttagaaatccatgccgcccatgccgccgcc 344444
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 285 ttagaactccatcccgcccatgccgccgcc 314 |||||| ||||| ||||||||||||||||| Sbjct: 676127 ttagaagtccatgccgcccatgccgccgcc 676156 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 233 ttagaactccatcccgcccatgccgccgcc 262 |||||| ||||| ||||||||||||||||| Sbjct: 676127 ttagaagtccatgccgcccatgccgccgcc 676156
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 233 ttagaactccatcccgcccatgccgccgcc 262 |||||| ||||| ||||||||||||||||| Sbjct: 6188322 ttagaagtccatgccgcccatgccgccgcc 6188293 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 285 ttagaactccatcccgcccatgccgccgcc 314 |||||| ||||| ||||||||||||||||| Sbjct: 6188322 ttagaagtccatgccgcccatgccgccgcc 6188293
>gb|U25850.1|CSU25850 Creopus spinulosus frequency clock protein (frq) gene, complete cds Length = 3412 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 ccgcccatgccgccgcctccc 318 ||||||||||||||||||||| Sbjct: 1510 ccgcccatgccgccgcctccc 1530 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 246 ccgcccatgccgccgcctccc 266 ||||||||||||||||||||| Sbjct: 1510 ccgcccatgccgccgcctccc 1530
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome Length = 1777831 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 463 acatattcacctttggcagcatca 486 |||||||||||||| ||||||||| Sbjct: 1271703 acatattcaccttttgcagcatca 1271680
>ref|XM_475802.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2040 Score = 40.1 bits (20), Expect = 6.7 Identities = 68/84 (80%) Strand = Plus / Minus Query: 409 agcgctgttctgatcactttaagtgggtcaatgataccagccttcaccatatccacatat 468 |||||||||| ||| ||||| | ||||| ||||| |||||||| | ||| || ||||| Sbjct: 1919 agcgctgttcggatgactttcacagggtcgatgatcccagccttaatcatgtcaacatac 1860 Query: 469 tcacctttggcagcatcatagccc 492 || ||| | || |||||||||||| Sbjct: 1859 tcccctcttgctgcatcatagccc 1836
>gb|BC072846.1| Xenopus laevis MGC80231 protein, mRNA (cDNA clone MGC:80231 IMAGE:5047680), complete cds Length = 1549 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 gatcactttaagtgggtcaa 439 |||||||||||||||||||| Sbjct: 417 gatcactttaagtgggtcaa 436
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 232 tttagaactccatcccgcccatgccgcc 259 ||||||| ||||| |||||||||||||| Sbjct: 463028 tttagaagtccatgccgcccatgccgcc 463055 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 284 tttagaactccatcccgcccatgccgcc 311 ||||||| ||||| |||||||||||||| Sbjct: 463028 tttagaagtccatgccgcccatgccgcc 463055
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 235 agaactccatcccgcccatgccgccgcc 262 |||| ||||| ||||||||||||||||| Sbjct: 2386923 agaaatccatgccgcccatgccgccgcc 2386896 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 287 agaactccatcccgcccatgccgccgcc 314 |||| ||||| ||||||||||||||||| Sbjct: 2386923 agaaatccatgccgcccatgccgccgcc 2386896
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 287 agaactccatcccgcccatgccgccgcc 314 |||| ||||| ||||||||||||||||| Sbjct: 2491841 agaagtccatgccgcccatgccgccgcc 2491868 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 235 agaactccatcccgcccatgccgccgcc 262 |||| ||||| ||||||||||||||||| Sbjct: 2491841 agaagtccatgccgcccatgccgccgcc 2491868
>gb|AF533976.1| Oreochromis niloticus unknown sequence Length = 99935 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 caggacaacaaaaaatgtga 132 |||||||||||||||||||| Sbjct: 97873 caggacaacaaaaaatgtga 97854
>emb|Y13334.1|CJY13334 Campylobacter jejuni groES, groEL genes Length = 2580 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 463 acatattcacctttggcagcatca 486 |||||||||||||| ||||||||| Sbjct: 2107 acatattcaccttttgcagcatca 2084
>emb|AL672115.1|MLO672115 Mesorhizobium loti R7A symbiosis island; segment 4/4 Length = 50801 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 241 ccatcccgcccatgccgccgcctcccat 268 |||| ||||||||||||||||| ||||| Sbjct: 2716 ccatgccgcccatgccgccgccgcccat 2689 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 293 ccatcccgcccatgccgccgcctcccat 320 |||| ||||||||||||||||| ||||| Sbjct: 2716 ccatgccgcccatgccgccgccgcccat 2689
>emb|AL139077.2|CJ11168X4 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment 4/6 Length = 282183 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 463 acatattcacctttggcagcatca 486 |||||||||||||| ||||||||| Sbjct: 210806 acatattcaccttttgcagcatca 210783
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 235 agaactccatcccgcccatgccgccgcc 262 |||| ||||| ||||||||||||||||| Sbjct: 3516298 agaaatccatgccgcccatgccgccgcc 3516271 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 287 agaactccatcccgcccatgccgccgcc 314 |||| ||||| ||||||||||||||||| Sbjct: 3516298 agaaatccatgccgcccatgccgccgcc 3516271
>gb|AF461064.1| Campylobacter jejuni 60 kDa chaperonin (cpn60) gene, complete cds Length = 1638 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 463 acatattcacctttggcagcatca 486 |||||||||||||| ||||||||| Sbjct: 1451 acatattcaccttttgcagcatca 1428
>gb|AF461537.1|AF461537 Campylobacter jejuni strain ATCC 43456 60 kDa chaperonin Cpn60 (cpn60) gene, complete cds Length = 1638 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 463 acatattcacctttggcagcatca 486 |||||||||||||| ||||||||| Sbjct: 1451 acatattcaccttttgcagcatca 1428
>gb|AF461535.1|AF461535 Campylobacter jejuni strain ATCC 43438 60 kDa chaperonin Cpn60 (cpn60) gene, complete cds Length = 1638 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 463 acatattcacctttggcagcatca 486 |||||||||||||| ||||||||| Sbjct: 1451 acatattcaccttttgcagcatca 1428
>gb|AF461534.1|AF461534 Campylobacter jejuni strain ATCC 43432 60 kDa chaperonin Cpn60 (cpn60) gene, complete cds Length = 1638 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 463 acatattcacctttggcagcatca 486 |||||||||||||| ||||||||| Sbjct: 1451 acatattcaccttttgcagcatca 1428
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 304 atgccgccgcctcccattgccggg 327 |||||||||||| ||||||||||| Sbjct: 1906814 atgccgccgccttccattgccggg 1906837
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 243 atcccgcccatgccgccgcctccc 266 ||||||||||||| |||||||||| Sbjct: 1954693 atcccgcccatgctgccgcctccc 1954716 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 atcccgcccatgccgccgcctccc 318 ||||||||||||| |||||||||| Sbjct: 1954693 atcccgcccatgctgccgcctccc 1954716
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 287 agaactccatcccgcccatgccgccgcc 314 |||| ||||| ||||||||||||||||| Sbjct: 3699086 agaaatccatgccgcccatgccgccgcc 3699059 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 235 agaactccatcccgcccatgccgccgcc 262 |||| ||||| ||||||||||||||||| Sbjct: 3699086 agaaatccatgccgcccatgccgccgcc 3699059
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 293 ccatcccgcccatgccgccgcctcccat 320 |||| ||||||||||||||||| ||||| Sbjct: 6729392 ccatgccgcccatgccgccgccgcccat 6729419 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 241 ccatcccgcccatgccgccgcctcccat 268 |||| ||||||||||||||||| ||||| Sbjct: 6729392 ccatgccgcccatgccgccgccgcccat 6729419 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 241 ccatcccgcccatgccgccgcctcccat 268 |||| ||||||||||||||||| ||||| Sbjct: 4687278 ccatgccgcccatgccgccgccgcccat 4687305 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 293 ccatcccgcccatgccgccgcctcccat 320 |||| ||||||||||||||||| ||||| Sbjct: 4687278 ccatgccgcccatgccgccgccgcccat 4687305
>dbj|AK070127.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023045O03, full insert sequence Length = 2139 Score = 40.1 bits (20), Expect = 6.7 Identities = 68/84 (80%) Strand = Plus / Minus Query: 409 agcgctgttctgatcactttaagtgggtcaatgataccagccttcaccatatccacatat 468 |||||||||| ||| ||||| | ||||| ||||| |||||||| | ||| || ||||| Sbjct: 1685 agcgctgttcggatgactttcacagggtcgatgatcccagccttaatcatgtcaacatac 1626 Query: 469 tcacctttggcagcatcatagccc 492 || ||| | || |||||||||||| Sbjct: 1625 tcccctcttgctgcatcatagccc 1602
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 232 tttagaactccatcccgcccatgccgcc 259 ||||||| ||||| |||||||||||||| Sbjct: 619879 tttagaagtccatgccgcccatgccgcc 619852 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 284 tttagaactccatcccgcccatgccgcc 311 ||||||| ||||| |||||||||||||| Sbjct: 619879 tttagaagtccatgccgcccatgccgcc 619852
>emb|AL954347.10| Mouse DNA sequence from clone RP23-438I5 on chromosome 2, complete sequence Length = 123289 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 attgtaacaggggcatttcg 58 |||||||||||||||||||| Sbjct: 15360 attgtaacaggggcatttcg 15379
>dbj|AP004515.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT04F23, TM0044a, complete sequence Length = 65620 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 acctaagtgcctcgtataat 211 |||||||||||||||||||| Sbjct: 28362 acctaagtgcctcgtataat 28343
>emb|AL671011.9| Mouse DNA sequence from clone RP23-95O23 on chromosome 4, complete sequence Length = 226950 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 acaggggcatttcgggcttg 64 |||||||||||||||||||| Sbjct: 79571 acaggggcatttcgggcttg 79590 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,882,804 Number of Sequences: 3902068 Number of extensions: 3882804 Number of successful extensions: 68759 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68078 Number of HSP's gapped (non-prelim): 681 length of query: 492 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 470 effective length of database: 17,147,199,772 effective search space: 8059183892840 effective search space used: 8059183892840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)