ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags28k12 |
|---|---|
| Clone Library Name | barley_pub |
>ZN263_HUMAN (O14978) Zinc finger protein 263 (Zinc finger protein FPM315)| Length = 683 Score = 30.8 bits (68), Expect = 0.82 Identities = 22/72 (30%), Positives = 32/72 (44%) Frame = +1 Query: 58 RYSHVYIL*RLKTSYLLYPSSSHGPMLPATLPSVFMFSAHRHETLMKQHLPTVGVPGKAG 237 R SH+ I R LYP S G + + P + AH+ E + + L T G + G Sbjct: 529 RSSHLVIHERTHERERLYPFSECGEAVSDSTPFLTNHGAHKAEKKLFECL-TCGKSFRQG 587 Query: 238 NHICSSRRAHIG 273 H+ +R H G Sbjct: 588 MHLTRHQRTHTG 599
>RAD3_SCHPO (Q02099) Protein kinase rad3 (EC 2.7.11.1) (DNA-repair protein rad3)| Length = 2386 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +3 Query: 234 RESHLQLPACSYWFCVLLANKAPSYPGISG 323 + HL+ A WF ++LA K P Y I+G Sbjct: 927 QNEHLRFYAIKAWFSLILATKEPEYSSIAG 956
>RAB7L_MOUSE (Q91YQ1) Ras-related protein Rab-7L1 (Rab-7-like protein 1)| Length = 204 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = +3 Query: 189 SNETTLAYSRRARKGRESHLQLPACSYWFCVLLANKAPSYP 311 +N TT + S+R ++ +S L LP+ C+LLANK+ P Sbjct: 91 TNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLANKSDLSP 131
>MGR5_RAT (P31424) Metabotropic glutamate receptor 5 precursor (mGluR5)| Length = 1203 Score = 28.9 bits (63), Expect = 3.1 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Frame = +1 Query: 115 SSSHGPMLPATLPSVFMFSAHRHETLMKQHLPTVGVPGKAGNHICSS----RRAHIGFAC 282 SSS G ++ V F+A+ E L L T PG G ICSS + + Sbjct: 1047 SSSQGSLMEQISSVVTRFTANISE-LNSMMLSTAATPGPPGTPICSSYLIPKEIQLPTTM 1105 Query: 283 FSRTRLPPIPESQVT 327 + + P+P +VT Sbjct: 1106 TTFAEIQPLPAIEVT 1120
>POLN_MANCV (Q69014) Non-structural polyprotein [Contains: p16; p23; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-) (3C-like protease) (3C-pro); RNA-directed RNA polymerase (EC 2.7.7. Length = 2208 Score = 28.5 bits (62), Expect = 4.1 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Frame = +3 Query: 147 ITVSVHVQCSPPRNSNETTLAYSRRARKGRESHL---QLPACSY--WFCVLLANKAPSYP 311 I V+ H Q + NSN T +S + + Q + S W + NK P +P Sbjct: 1907 ILVAEHKQVNRHFNSNSVTFGWSTAPVNPMAAEIVTNQAHSTSRHAWLSIGAQNKGPLFP 1966 Query: 312 GISGHLAD 335 GI H D Sbjct: 1967 GIPNHFPD 1974
>K6PF_LISMO (Q8Y6W0) 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase)| (Phosphohexokinase) Length = 319 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = +1 Query: 169 SAHRHETLMKQHLPTVGVPGKAGNHICSSRRAHIGF 276 S H E L K+ PT+G+PG N I S IGF Sbjct: 105 SYHGAEALTKRGFPTIGIPGTIDNDI-SGTDFTIGF 139
>K6PF_LISMF (Q71Z96) 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase)| (Phosphohexokinase) Length = 319 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = +1 Query: 169 SAHRHETLMKQHLPTVGVPGKAGNHICSSRRAHIGF 276 S H E L K+ PT+G+PG N I S IGF Sbjct: 105 SYHGAEALTKRGFPTIGIPGTIDNDI-SGTDFTIGF 139
>K6PF_LISIN (Q92BE4) 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase)| (Phosphohexokinase) Length = 319 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = +1 Query: 169 SAHRHETLMKQHLPTVGVPGKAGNHICSSRRAHIGF 276 S H E L K+ PT+G+PG N I S IGF Sbjct: 105 SYHGAEALTKRGFPTIGIPGTIDNDI-SGTDFTIGF 139
>ZN366_HUMAN (Q8N895) Zinc finger protein 366| Length = 744 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/49 (40%), Positives = 22/49 (44%) Frame = +1 Query: 88 LKTSYLLYPSSSHGPMLPATLPSVFMFSAHRHETLMKQHLPTVGVPGKA 234 L T Y YP G M P +PS F RH L KQ P +P KA Sbjct: 170 LPTPYPYYPKVHPGLMFPFFVPSSSPFPFSRHTFLPKQP-PEPLLPRKA 217
>Y2418_PSEAE (Q9I163) Hypothetical protein PA2418| Length = 286 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +1 Query: 148 LPSVFMFSAHRHETLMKQHLPTVGVPGKAG 237 LPS + R++TL+ +P VG+P +AG Sbjct: 129 LPSSDKMNPPRYQTLLDADIPRVGLPDRAG 158
>MAF_MOUSE (P54843) Transcription factor Maf (Proto-oncogene c-maf)| Length = 370 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/30 (43%), Positives = 13/30 (43%) Frame = +1 Query: 175 HRHETLMKQHLPTVGVPGKAGNHICSSRRA 264 H H H PT G PG AG SS A Sbjct: 184 HHHHAAGHHHHPTAGAPGTAGGASSSSNGA 213
>RAB7L_HUMAN (O14966) Ras-related protein Rab-7L1 (Rab-7-like protein 1)| Length = 203 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = +3 Query: 189 SNETTLAYSRRARKGRESHLQLPACSYWFCVLLANKAPSYP 311 +N TT + S+R ++ +S L LP C+LLANK P Sbjct: 91 TNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLANKCDLSP 131
>CIP4_HUMAN (Q15642) Cdc42-interacting protein 4 (Thyroid receptor-interacting| protein 10) (TRIP-10) Length = 545 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = -2 Query: 339 FGQPGDLRFRDRREPCSREARKTNMSTP 256 F +PGD+ F D +P +R +++ TP Sbjct: 276 FARPGDVEFEDFSQPMNRAPSDSSLGTP 303
>RPOC_OCEIH (Q8ETY7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/53 (28%), Positives = 24/53 (45%) Frame = +1 Query: 67 HVYIL*RLKTSYLLYPSSSHGPMLPATLPSVFMFSAHRHETLMKQHLPTVGVP 225 HV ++ R + SS +LP +L + F H+ LM++ P G P Sbjct: 1065 HVEVMVRQMLRKIRVVSSGDTEVLPGSLLELHQFKEANHKVLMEEGEPATGRP 1117
>BODG_RAT (Q9QZU7) Gamma-butyrobetaine dioxygenase (EC 1.14.11.1)| (Gamma-butyrobetaine,2-oxoglutarate dioxygenase) (Gamma-butyrobetaine hydroxylase) (Gamma-BBH) Length = 387 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +3 Query: 210 YSRRARKGRESHLQLPACSYW 272 +S+ AR G + L LP C YW Sbjct: 96 FSQEARAGLQGELFLPECQYW 116
>PP1RA_RAT (O55000) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (Phosphatase 1 nuclear targeting subunit) (PNUTS protein) (MHC class I region proline-rich protein CAT53) Length = 872 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +2 Query: 227 ERPGITFAAPGVLILVLRASREQGSLLSRNLRSPG*PN 340 +RPG A V L+ AS E G+L ++ + SPG PN Sbjct: 350 DRPGTPVPAVEVPELMDAASSEPGALDAKPVESPGDPN 387
>RS4_SYNPX (Q7U5K9) 30S ribosomal protein S4| Length = 202 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = -2 Query: 354 DLAXLFGQPGDL-RFRDRREPCSREARKTNMSTPGAANV 241 D+A +PGD+ R+R+ CS++ + N+ PG ANV Sbjct: 125 DIASYQCKPGDVVAIRERK--CSKQLAEGNLEFPGLANV 161
>REV_HV1Y2 (P35960) REV protein (Anti-repression transactivator protein)| (ART/TRS) Length = 116 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +3 Query: 153 VSVHVQCSPPRNSNETTLAYSRRARKGRESHLQLPACSYWFCVLLAN 293 + V Q +PP +S T A R R+ RE Q+ + S W LL+N Sbjct: 19 IKVLYQSNPPPSSEGTRQARRNRRRRWRERQRQIRSISGW---LLSN 62
>REV_HV1RH (P05870) REV protein (Anti-repression transactivator protein)| (ART/TRS) Length = 116 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = +3 Query: 168 QCSPPRNSNETTLAYSRRARKGRESHLQLPACSYW 272 Q +PP + T A R R+ RE Q+ CS W Sbjct: 24 QSNPPPSPEGTRQARRNRRRRWRERQRQIRRCSEW 58
>MAF_RAT (P54844) Transcription factor Maf (Proto-oncogene c-maf)| Length = 369 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = +1 Query: 175 HRHETLMKQHLPTVGVPGKAGNHICSSRRA 264 H H H PT G PG AG+ S+ A Sbjct: 184 HHHHATGHHHHPTAGAPGAAGSASASASGA 213
>MAF_HUMAN (O75444) Transcription factor Maf (Proto-oncogene c-maf)| Length = 403 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = +1 Query: 175 HRHETLMKQHLPTVGVPGKAGNHICSS 255 H H H PT G PG AG+ S+ Sbjct: 184 HHHHAAGHHHHPTAGAPGAAGSAAASA 210
>A1AT_MUSCR (P26595) Alpha-1-antiproteinase precursor (Alpha-1-antitrypsin)| (Alpha-1-proteinase inhibitor) (AAT) Length = 412 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +1 Query: 91 KTSYLLYPSSSHGPMLPATLPS--VFMFSAHRHETLMKQHLPTVGVPGKAGNHICSSRRA 264 +T+ L P L TL + F +RH L + HLP + + +GN+ ++ + Sbjct: 265 RTAVFLLPDDGKMQHLEQTLNKELISKFLLNRHRRLAQVHLPRLSL---SGNYTLNTLMS 321 Query: 265 HIG 273 H+G Sbjct: 322 HLG 324 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,572,686 Number of Sequences: 219361 Number of extensions: 1001768 Number of successful extensions: 2295 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2249 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2295 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
