ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28k08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 196 3e-47
2dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic D... 196 3e-47
3dbj|AP005471.2| Oryza sativa (japonica cultivar-group) genomic D... 196 3e-47
4dbj|AK071892.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 3e-47
5ref|NM_112228.1| Arabidopsis thaliana transporter AT3G13772 mRNA... 92 1e-15
6emb|BX825474.1|CNS0A6BM Arabidopsis thaliana Full-length cDNA Co... 92 1e-15
7dbj|AP001307.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 92 1e-15
8gb|BT013512.1| Lycopersicon esculentum clone 132227F, mRNA sequence 54 3e-04
9dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
10dbj|AK066545.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
11gb|BT024118.1| Zea mays clone EL01N0506E07 mRNA sequence 52 0.001
12gb|AY111381.1| Zea mays CL29240_1 mRNA sequence 52 0.001
13ref|XM_417455.1| PREDICTED: Gallus gallus similar to Transmembra... 48 0.020
14gb|BC022850.2| Homo sapiens transmembrane 9 superfamily protein ... 46 0.078
15ref|NM_014742.2| Homo sapiens transmembrane 9 superfamily protei... 46 0.078
16emb|AL049539.21|HSJ836N17 Human DNA sequence from clone RP5-836N... 46 0.078
17gb|BC021107.1| Homo sapiens transmembrane 9 superfamily protein ... 46 0.078
18dbj|AK126534.1| Homo sapiens cDNA FLJ44570 fis, clone UTERU30110... 46 0.078
19dbj|AK124411.1| Homo sapiens cDNA FLJ42420 fis, clone BLADE2002730 46 0.078
20emb|CR611710.1| full-length cDNA clone CS0DC015YK21 of Neuroblas... 46 0.078
21emb|CR610143.1| full-length cDNA clone CS0DI087YN17 of Placenta ... 46 0.078
22dbj|D87444.1| Homo sapiens mRNA for KIAA0255 gene, partial cds 46 0.078
23gb|BC005173.2| Homo sapiens cDNA clone IMAGE:3507918, containing... 46 0.078
24gb|AC154684.2| Mus musculus BAC clone RP23-143E1 from 12, comple... 46 0.078
25ref|XM_788876.1| PREDICTED: Strongylocentrotus purpuratus simila... 44 0.31
26gb|AC110603.7| Homo sapiens chromosome 18, clone CTD-2006O16, co... 44 0.31
27gb|BC099133.1| Rattus norvegicus transmembrane 9 superfamily pro... 44 0.31
28ref|NM_001025649.1| Rattus norvegicus transmembrane 9 superfamil... 44 0.31
29emb|CR555306.1| Azoarcus sp. EbN1 complete genome 42 1.2
30gb|AY107180.1| Zea mays PCO124990 mRNA sequence 42 1.2
31dbj|AK116611.1| Ciona intestinalis cDNA, clone:cits040a02, full ... 42 1.2
32emb|AL596217.6| Human DNA sequence from clone RP11-13J14 on chro... 40 4.8
33emb|CR628336.1| Legionella pneumophila str. Paris complete genome 40 4.8
34emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, ... 40 4.8
35emb|AJ250496.1|MMU250496 Mus musculus S100A9 gene for S100A9 pro... 40 4.8
36gb|AC094023.1| Homo sapiens chromosome 1 clone RP4-738H2, comple... 40 4.8
37emb|BX537304.14| Zebrafish DNA sequence from clone CH211-283H6 i... 40 4.8
38gb|AC093800.2| Homo sapiens BAC clone RP11-312J17 from 4, comple... 40 4.8
39emb|BX465858.8| Zebrafish DNA sequence from clone DKEY-179I14 in... 40 4.8
40gb|AC007050.25| Homo sapiens chromosome 22 clone bac32 map 22q11... 40 4.8
41gb|AC007511.8|AC007511 Homo sapiens, clone RP11-84A1, complete s... 40 4.8
42gb|AC012392.1|AC012392 Genomic Sequence For Arabidopsis thaliana... 40 4.8
43emb|CR388164.9| Zebrafish DNA sequence from clone DKEY-74H17 in ... 40 4.8
44gb|AC152934.2| Xenopus tropicalis clone ISB1-84B23, complete seq... 40 4.8
45gb|AC122425.5| Mus musculus BAC clone RP24-174D10 from 3, comple... 40 4.8 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  196 bits (99), Expect = 3e-47
 Identities = 120/127 (94%)
 Strand = Plus / Plus

                                                                            
Query: 235      atcagtcgatcttcacagaagcatagatcttcctcacaaaccagaagcaagcatagaagc 294
                ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 21607705 atcagtcgatcttcacagaagcatatatcttcctcacgaaccagaagcaagcatagaagc 21607764

                                                                            
Query: 295      caatggtgccagtcaggacgaagaaggcataagaaatgatcagcatgtaaccaaagtaga 354
                ||||||| |||||||| |||||||| ||||| || |||||||||||||||||||||||||
Sbjct: 21607765 caatggtaccagtcagcacgaagaaagcatacgagatgatcagcatgtaaccaaagtaga 21607824

                       
Query: 355      gaatgcc 361
                |||||||
Sbjct: 21607825 gaatgcc 21607831



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 273      aaccagaagcaagcatagaagccaatggtgccagtcaggacgaagaaggc 322
                ||||||||||| || |||||||| || ||||| || ||||||||||||||
Sbjct: 26250928 aaccagaagcaggcgtagaagccgattgtgccggtgaggacgaagaaggc 26250879
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>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0567G03
          Length = 196834

 Score =  196 bits (99), Expect = 3e-47
 Identities = 120/127 (94%)
 Strand = Plus / Plus

                                                                          
Query: 235    atcagtcgatcttcacagaagcatagatcttcctcacaaaccagaagcaagcatagaagc 294
              ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 164889 atcagtcgatcttcacagaagcatatatcttcctcacgaaccagaagcaagcatagaagc 164948

                                                                          
Query: 295    caatggtgccagtcaggacgaagaaggcataagaaatgatcagcatgtaaccaaagtaga 354
              ||||||| |||||||| |||||||| ||||| || |||||||||||||||||||||||||
Sbjct: 164949 caatggtaccagtcagcacgaagaaagcatacgagatgatcagcatgtaaccaaagtaga 165008

                     
Query: 355    gaatgcc 361
              |||||||
Sbjct: 165009 gaatgcc 165015
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>dbj|AP005471.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBa0062E01
          Length = 161804

 Score =  196 bits (99), Expect = 3e-47
 Identities = 120/127 (94%)
 Strand = Plus / Plus

                                                                        
Query: 235  atcagtcgatcttcacagaagcatagatcttcctcacaaaccagaagcaagcatagaagc 294
            ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 6636 atcagtcgatcttcacagaagcatatatcttcctcacgaaccagaagcaagcatagaagc 6695

                                                                        
Query: 295  caatggtgccagtcaggacgaagaaggcataagaaatgatcagcatgtaaccaaagtaga 354
            ||||||| |||||||| |||||||| ||||| || |||||||||||||||||||||||||
Sbjct: 6696 caatggtaccagtcagcacgaagaaagcatacgagatgatcagcatgtaaccaaagtaga 6755

                   
Query: 355  gaatgcc 361
            |||||||
Sbjct: 6756 gaatgcc 6762
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>dbj|AK071892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059K02, full
            insert sequence
          Length = 1416

 Score =  196 bits (99), Expect = 3e-47
 Identities = 120/127 (94%)
 Strand = Plus / Minus

                                                                        
Query: 235  atcagtcgatcttcacagaagcatagatcttcctcacaaaccagaagcaagcatagaagc 294
            ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 1147 atcagtcgatcttcacagaagcatatatcttcctcacgaaccagaagcaagcatagaagc 1088

                                                                        
Query: 295  caatggtgccagtcaggacgaagaaggcataagaaatgatcagcatgtaaccaaagtaga 354
            ||||||| |||||||| |||||||| ||||| || |||||||||||||||||||||||||
Sbjct: 1087 caatggtaccagtcagcacgaagaaagcatacgagatgatcagcatgtaaccaaagtaga 1028

                   
Query: 355  gaatgcc 361
            |||||||
Sbjct: 1027 gaatgcc 1021
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>ref|NM_112228.1| Arabidopsis thaliana transporter AT3G13772 mRNA, complete cds
          Length = 2105

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                        
Query: 258  tagatcttcctcacaaaccagaagcaagcatagaagccaatggtgccagtcaggacgaag 317
            |||||||| ||||| |||||||||||||||||||| || || |||||||| |||||||||
Sbjct: 1904 tagatctttctcacgaaccagaagcaagcatagaaaccgattgtgccagttaggacgaag 1845

                                                  
Query: 318  aaggcataagaaatgatcagcatgtaaccaaagtagag 355
            || || ||||| ||||| | |||||| || ||||||||
Sbjct: 1844 aatgcgtaagagatgataatcatgtacccgaagtagag 1807
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>emb|BX825474.1|CNS0A6BM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL39ZD02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 529

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                       
Query: 258 tagatcttcctcacaaaccagaagcaagcatagaagccaatggtgccagtcaggacgaag 317
           |||||||| ||||| |||||||||||||||||||| || || |||||||| |||||||||
Sbjct: 347 tagatctttctcacgaaccagaagcaagcatagaaaccgattgtgccagttaggacgaag 288

                                                 
Query: 318 aaggcataagaaatgatcagcatgtaaccaaagtagag 355
           || || ||||| ||||| | |||||| || ||||||||
Sbjct: 287 aatgcgtaagagatgataatcatgtacccgaagtagag 250
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>dbj|AP001307.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MMM17
          Length = 80733

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                         
Query: 258   tagatcttcctcacaaaccagaagcaagcatagaagccaatggtgccagtcaggacgaag 317
             |||||||| ||||| |||||||||||||||||||| || || |||||||| |||||||||
Sbjct: 66587 tagatctttctcacgaaccagaagcaagcatagaaaccgattgtgccagttaggacgaag 66646

                                                   
Query: 318   aaggcataagaaatgatcagcatgtaaccaaagtagag 355
             || || ||||| ||||| | |||||| || ||||||||
Sbjct: 66647 aatgcgtaagagatgataatcatgtacccgaagtagag 66684
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>gb|BT013512.1| Lycopersicon esculentum clone 132227F, mRNA sequence
          Length = 2358

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                        
Query: 273  aaccagaagcaagcatagaagccaatggtgccagtcaggacgaagaaggcataagaaatg 332
            |||||||||||||| ||||| || || |||||||||| ||| ||||| ||||| ||    
Sbjct: 2021 aaccagaagcaagcgtagaacccgattgtgccagtcaagacaaagaaagcatatgatgca 1962

                                   
Query: 333  atcagcatgtaaccaaagtagag 355
            |||| |||||| |||||||||||
Sbjct: 1961 atcaacatgtagccaaagtagag 1939
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>dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0453H04
          Length = 175047

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 273    aaccagaagcaagcatagaagccaatggtgccagtcaggacgaagaaggc 322
              ||||||||||| || |||||||| || ||||| || ||||||||||||||
Sbjct: 115468 aaccagaagcaggcgtagaagccgattgtgccggtgaggacgaagaaggc 115419
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>dbj|AK066545.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069A19, full
            insert sequence
          Length = 2291

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 273  aaccagaagcaagcatagaagccaatggtgccagtcaggacgaagaaggc 322
            ||||||||||| || |||||||| || ||||| || ||||||||||||||
Sbjct: 1993 aaccagaagcaggcgtagaagccgattgtgccggtgaggacgaagaaggc 1944
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>gb|BT024118.1| Zea mays clone EL01N0506E07 mRNA sequence
          Length = 1893

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 273  aaccagaagcaagcatagaagccaatggtgccagtcaggacgaagaaggc 322
            ||||||||||| || ||||||||||||||||| || || || ||||||||
Sbjct: 1567 aaccagaagcaggcgtagaagccaatggtgccggtgagcacaaagaaggc 1518
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>gb|AY111381.1| Zea mays CL29240_1 mRNA sequence
          Length = 588

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 273 aaccagaagcaagcatagaagccaatggtgccagtcaggacgaagaaggc 322
           ||||||||||| || ||||||||||||||||| || || || ||||||||
Sbjct: 279 aaccagaagcaggcgtagaagccaatggtgccggtgagcacaaagaaggc 328
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>ref|XM_417455.1| PREDICTED: Gallus gallus similar to Transmembrane 9 superfamily
            protein member 4 (LOC419281), mRNA
          Length = 2632

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 285  gcatagaagccaatggtgccagtcagga 312
            ||||||||||||||||||||||| ||||
Sbjct: 2309 gcatagaagccaatggtgccagtgagga 2282
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>gb|BC022850.2| Homo sapiens transmembrane 9 superfamily protein member 4, mRNA (cDNA
            clone MGC:16564 IMAGE:4098679), complete cds
          Length = 3752

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 235  atcagtcgatcttcacagaagcatagatctt 265
            ||||||| |||||||||| ||||||||||||
Sbjct: 1923 atcagtctatcttcacagcagcatagatctt 1893
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>ref|NM_014742.2| Homo sapiens transmembrane 9 superfamily protein member 4 (TM9SF4),
            mRNA
          Length = 3752

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 235  atcagtcgatcttcacagaagcatagatctt 265
            ||||||| |||||||||| ||||||||||||
Sbjct: 1923 atcagtctatcttcacagcagcatagatctt 1893
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>emb|AL049539.21|HSJ836N17 Human DNA sequence from clone RP5-836N17 on chromosome 20q11.1-11.21
             Contains the 3' end of the HCK for hemopoietic cell
             kinase, the gene for novel protein (KIAA0255), the RPL24P1
             gene for ribosomal protein L24 pseudogene 1 and two CpG
             Islands, complete sequence
          Length = 111694

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 235   atcagtcgatcttcacagaagcatagatctt 265
             ||||||| |||||||||| ||||||||||||
Sbjct: 90005 atcagtctatcttcacagcagcatagatctt 89975
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>gb|BC021107.1| Homo sapiens transmembrane 9 superfamily protein member 4, mRNA (cDNA
            clone MGC:31858 IMAGE:4896167), complete cds
          Length = 2068

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 235  atcagtcgatcttcacagaagcatagatctt 265
            ||||||| |||||||||| ||||||||||||
Sbjct: 1941 atcagtctatcttcacagcagcatagatctt 1911
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>dbj|AK126534.1| Homo sapiens cDNA FLJ44570 fis, clone UTERU3011063, highly  similar
            to Transmembrane 9 superfamily protein member 4
          Length = 3428

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 235  atcagtcgatcttcacagaagcatagatctt 265
            ||||||| |||||||||| ||||||||||||
Sbjct: 1615 atcagtctatcttcacagcagcatagatctt 1585
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>dbj|AK124411.1| Homo sapiens cDNA FLJ42420 fis, clone BLADE2002730
          Length = 3015

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 235  atcagtcgatcttcacagaagcatagatctt 265
            ||||||| |||||||||| ||||||||||||
Sbjct: 1206 atcagtctatcttcacagcagcatagatctt 1176
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>emb|CR611710.1| full-length cDNA clone CS0DC015YK21 of Neuroblastoma Cot
            25-normalized of Homo sapiens (human)
          Length = 1607

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 235  atcagtcgatcttcacagaagcatagatctt 265
            ||||||| |||||||||| ||||||||||||
Sbjct: 1534 atcagtctatcttcacagcagcatagatctt 1504
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>emb|CR610143.1| full-length cDNA clone CS0DI087YN17 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 1184

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 235  atcagtcgatcttcacagaagcatagatctt 265
            ||||||| |||||||||| ||||||||||||
Sbjct: 1138 atcagtctatcttcacagcagcatagatctt 1108
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>dbj|D87444.1| Homo sapiens mRNA for KIAA0255 gene, partial cds
          Length = 4028

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 235  atcagtcgatcttcacagaagcatagatctt 265
            ||||||| |||||||||| ||||||||||||
Sbjct: 2219 atcagtctatcttcacagcagcatagatctt 2189
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>gb|BC005173.2| Homo sapiens cDNA clone IMAGE:3507918, containing frame-shift errors
          Length = 3775

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 235  atcagtcgatcttcacagaagcatagatctt 265
            ||||||| |||||||||| ||||||||||||
Sbjct: 1918 atcagtctatcttcacagcagcatagatctt 1888
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>gb|AC154684.2| Mus musculus BAC clone RP23-143E1 from 12, complete sequence
          Length = 219213

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 123   atggaatcccatctcaaatccca 145
             |||||||||||||||||||||||
Sbjct: 57483 atggaatcccatctcaaatccca 57461
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>ref|XM_788876.1| PREDICTED: Strongylocentrotus purpuratus similar to transmembrane 9
            superfamily member 2 (LOC589226), mRNA
          Length = 1635

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 256  catagatcttcctcacaaaccagaagcaagcatagaagccaatggt 301
            ||||||||||  | |||||||||||||||||| |||| || |||||
Sbjct: 1615 catagatcttggtgacaaaccagaagcaagcaaagaatcccatggt 1570
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>gb|AC110603.7| Homo sapiens chromosome 18, clone CTD-2006O16, complete sequence
          Length = 149256

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 323   ataagaaatgatcagcatgtaa 344
             ||||||||||||||||||||||
Sbjct: 23678 ataagaaatgatcagcatgtaa 23699
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>gb|BC099133.1| Rattus norvegicus transmembrane 9 superfamily protein member 4, mRNA
            (cDNA clone MGC:116278 IMAGE:7454474), complete cds
          Length = 2273

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 236  tcagtcgatcttcacagaagcatagatctt 265
            |||||| |||||||||| ||||||||||||
Sbjct: 2143 tcagtctatcttcacagcagcatagatctt 2114
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>ref|NM_001025649.1| Rattus norvegicus transmembrane 9 superfamily protein member 4
            (Tm9sf4), mRNA
          Length = 2273

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 236  tcagtcgatcttcacagaagcatagatctt 265
            |||||| |||||||||| ||||||||||||
Sbjct: 2143 tcagtctatcttcacagcagcatagatctt 2114
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 64      catccgtgaacatccggtgat 84
               |||||||||||||||||||||
Sbjct: 2253262 catccgtgaacatccggtgat 2253282
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>gb|AY107180.1| Zea mays PCO124990 mRNA sequence
          Length = 1265

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 278 gaagcaagcatagaagccaatggtgccagtcaggacgaagaaggc 322
           ||||||||||||||| || || ||||| |||| | ||||||||||
Sbjct: 774 gaagcaagcatagaatccgattgtgccggtcaaggcgaagaaggc 730
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>dbj|AK116611.1| Ciona intestinalis cDNA, clone:cits040a02, full insert sequence
          Length = 2074

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 235  atcagtcgatcttcacagaagcatagatcttcc 267
            ||||||||||||||||   ||||||||||||||
Sbjct: 1263 atcagtcgatcttcacttgagcatagatcttcc 1231
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>emb|AL596217.6| Human DNA sequence from clone RP11-13J14 on chromosome 1 Contains a CpG
             island, complete sequence
          Length = 183774

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   catggaatcccatctcaaat 141
             ||||||||||||||||||||
Sbjct: 49153 catggaatcccatctcaaat 49134
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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 82      gattcttactcctaccaggc 101
               ||||||||||||||||||||
Sbjct: 1774291 gattcttactcctaccaggc 1774310
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>emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 14
          Length = 198563

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    tcagcaccatgtatgatatc 169
              ||||||||||||||||||||
Sbjct: 152147 tcagcaccatgtatgatatc 152128
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>emb|AJ250496.1|MMU250496 Mus musculus S100A9 gene for S100A9 protein exons 1-3
          Length = 6991

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 105  acatattctaccaaaaccatggaa 128
            ||||||||||||| ||||||||||
Sbjct: 5624 acatattctaccagaaccatggaa 5647
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>gb|AC094023.1| Homo sapiens chromosome 1 clone RP4-738H2, complete sequence
          Length = 122685

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   catggaatcccatctcaaat 141
             ||||||||||||||||||||
Sbjct: 61683 catggaatcccatctcaaat 61664
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>emb|BX537304.14| Zebrafish DNA sequence from clone CH211-283H6 in linkage group 5,
             complete sequence
          Length = 157564

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     atacttttagaattacacaa 23
             ||||||||||||||||||||
Sbjct: 90279 atacttttagaattacacaa 90260
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>gb|AC093800.2| Homo sapiens BAC clone RP11-312J17 from 4, complete sequence
          Length = 161370

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    caaatcccagttctcagcac 156
              ||||||||||||||||||||
Sbjct: 108267 caaatcccagttctcagcac 108286
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>emb|BX465858.8| Zebrafish DNA sequence from clone DKEY-179I14 in linkage group 17,
             complete sequence
          Length = 88708

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   aatcccagttctcagcacca 158
             ||||||||||||||||||||
Sbjct: 42238 aatcccagttctcagcacca 42257
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>gb|AC007050.25| Homo sapiens chromosome 22 clone bac32 map 22q11, complete sequence
          Length = 163908

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   cccagttctcagcaccatgt 161
             ||||||||||||||||||||
Sbjct: 73731 cccagttctcagcaccatgt 73750
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>gb|AC007511.8|AC007511 Homo sapiens, clone RP11-84A1, complete sequence
          Length = 168822

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   acatattctaccaaaaccat 124
             ||||||||||||||||||||
Sbjct: 81823 acatattctaccaaaaccat 81804
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>gb|AC012392.1|AC012392 Genomic Sequence For Arabidopsis thaliana clone C17L7, Chromosome IV,
              complete sequence
          Length = 183147

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 150    tcagcaccatgtatgatatc 169
              ||||||||||||||||||||
Sbjct: 100963 tcagcaccatgtatgatatc 100982
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>emb|CR388164.9| Zebrafish DNA sequence from clone DKEY-74H17 in linkage group 17,
             complete sequence
          Length = 115163

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   aatcccagttctcagcacca 158
             ||||||||||||||||||||
Sbjct: 38530 aatcccagttctcagcacca 38549
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>gb|AC152934.2| Xenopus tropicalis clone ISB1-84B23, complete sequence
          Length = 87331

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 334   tcagcatgtaaccaaagtagagaa 357
             |||| |||||||||||||||||||
Sbjct: 43076 tcagaatgtaaccaaagtagagaa 43053
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>gb|AC122425.5| Mus musculus BAC clone RP24-174D10 from 3, complete sequence
          Length = 163172

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 105   acatattctaccaaaaccatggaa 128
             ||||||||||||| ||||||||||
Sbjct: 66684 acatattctaccagaaccatggaa 66661


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,118,128
Number of Sequences: 3902068
Number of extensions: 3118128
Number of successful extensions: 52943
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52840
Number of HSP's gapped (non-prelim): 102
length of query: 361
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 339
effective length of database: 17,147,199,772
effective search space: 5812900722708
effective search space used: 5812900722708
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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