ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1i15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469533.1| Oryza sativa (japonica cultivar-group), mRNA 58 1e-05
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 58 1e-05
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 58 1e-05
4gb|AC090882.10| Oryza sativa chromosome 3 BAC OSJNBa0014G15 geno... 58 1e-05
5dbj|AK072556.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 1e-05
6dbj|AK058713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 1e-05
7gb|AY106456.1| Zea mays PCO087051 mRNA sequence 48 0.013
8gb|AC011462.4| Homo sapiens chromosome 19 clone CTC-435M10, comp... 42 0.83
9gb|AC011510.7|AC011510 Homo sapiens chromosome 19 clone CTD-2195... 42 0.83
10emb|CR407585.14| Zebrafish DNA sequence from clone CH211-141O18 ... 40 3.3
11emb|Z77659.1|CEF23B12 Caenorhabditis elegans Cosmid F23B12, comp... 40 3.3
12emb|CR407558.22| Zebrafish DNA sequence from clone CH211-107M8 i... 40 3.3
13gb|AC105460.4| Homo sapiens BAC clone RP11-297P16 from 4, comple... 40 3.3
14gb|AC007859.11| Homo sapiens, clone RP11-41A1, complete sequence 40 3.3
15gb|AC022031.8| Homo sapiens chromosome 18, clone RP11-397A16, co... 40 3.3
16ref|NM_074180.3| Caenorhabditis elegans F23B12.7 (F23B12.7) mRNA... 40 3.3
17emb|CR956639.4| Pig DNA sequence from clone CH242-279P20 on chro... 40 3.3
18emb|AL807797.10| Mouse DNA sequence from clone RP23-417D2 on chr... 40 3.3 
>ref|XM_469533.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2486

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 87   aaggacaacaagcttattaagtatgctccgcttctca 123
            |||||||||||||||||| ||||||||| ||||||||
Sbjct: 2448 aaggacaacaagcttattgagtatgctctgcttctca 2412
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                     
Query: 87       aaggacaacaagcttattaagtatgctccgcttctca 123
                |||||||||||||||||| ||||||||| ||||||||
Sbjct: 28560919 aaggacaacaagcttattgagtatgctctgcttctca 28560955
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                     
Query: 87       aaggacaacaagcttattaagtatgctccgcttctca 123
                |||||||||||||||||| ||||||||| ||||||||
Sbjct: 28652243 aaggacaacaagcttattgagtatgctctgcttctca 28652279
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>gb|AC090882.10| Oryza sativa chromosome 3 BAC OSJNBa0014G15 genomic sequence, complete
              sequence
          Length = 158839

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                   
Query: 87     aaggacaacaagcttattaagtatgctccgcttctca 123
              |||||||||||||||||| ||||||||| ||||||||
Sbjct: 137977 aaggacaacaagcttattgagtatgctctgcttctca 137941
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>dbj|AK072556.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023130E21, full
            insert sequence
          Length = 1107

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 87   aaggacaacaagcttattaagtatgctccgcttctca 123
            |||||||||||||||||| ||||||||| ||||||||
Sbjct: 1059 aaggacaacaagcttattgagtatgctctgcttctca 1023
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>dbj|AK058713.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-D09, full
            insert sequence
          Length = 1323

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 87   aaggacaacaagcttattaagtatgctccgcttctca 123
            |||||||||||||||||| ||||||||| ||||||||
Sbjct: 1280 aaggacaacaagcttattgagtatgctctgcttctca 1244
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>gb|AY106456.1| Zea mays PCO087051 mRNA sequence
          Length = 1356

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 92   caacaagcttattaagtatgctccgcttctca 123
            ||||||||||||| ||||||||| ||||||||
Sbjct: 1264 caacaagcttattgagtatgctctgcttctca 1233
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>gb|AC011462.4| Homo sapiens chromosome 19 clone CTC-435M10, complete sequence
          Length = 148841

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 160    tgctcctcagatctagctagg 180
              |||||||||||||||||||||
Sbjct: 132899 tgctcctcagatctagctagg 132879
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>gb|AC011510.7|AC011510 Homo sapiens chromosome 19 clone CTD-2195B23, complete sequence
          Length = 129402

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 160    tgctcctcagatctagctagg 180
              |||||||||||||||||||||
Sbjct: 126614 tgctcctcagatctagctagg 126634
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>emb|CR407585.14| Zebrafish DNA sequence from clone CH211-141O18 in linkage group 6,
             complete sequence
          Length = 164483

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   gttacagaaaaatgcactgc 146
             ||||||||||||||||||||
Sbjct: 70713 gttacagaaaaatgcactgc 70694
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>emb|Z77659.1|CEF23B12 Caenorhabditis elegans Cosmid F23B12, complete sequence
          Length = 27797

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    ttcgaaaggacaacaagctt 101
             ||||||||||||||||||||
Sbjct: 23116 ttcgaaaggacaacaagctt 23097
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>emb|CR407558.22| Zebrafish DNA sequence from clone CH211-107M8 in linkage group 8,
              complete sequence
          Length = 175706

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    gttacagaaaaatgcactgc 146
              ||||||||||||||||||||
Sbjct: 143554 gttacagaaaaatgcactgc 143573
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>gb|AC105460.4| Homo sapiens BAC clone RP11-297P16 from 4, complete sequence
          Length = 185755

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 132    agaaaaatgcactgctttcaagtt 155
              ||||||||| ||||||||||||||
Sbjct: 161747 agaaaaatgaactgctttcaagtt 161724
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>gb|AC007859.11| Homo sapiens, clone RP11-41A1, complete sequence
          Length = 157267

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   tccaaatttatattcccagc 210
             ||||||||||||||||||||
Sbjct: 85080 tccaaatttatattcccagc 85099
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>gb|AC022031.8| Homo sapiens chromosome 18, clone RP11-397A16, complete sequence
          Length = 202566

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   tccaaatttatattcccagc 210
             ||||||||||||||||||||
Sbjct: 62599 tccaaatttatattcccagc 62580
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>ref|NM_074180.3| Caenorhabditis elegans F23B12.7 (F23B12.7) mRNA, complete cds
          Length = 2955

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 82   ttcgaaaggacaacaagctt 101
            ||||||||||||||||||||
Sbjct: 1633 ttcgaaaggacaacaagctt 1614
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>emb|CR956639.4| Pig DNA sequence from clone CH242-279P20 on chromosome 17, complete
            sequence
          Length = 50643

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 183  ggagacagtccaaatttata 202
            ||||||||||||||||||||
Sbjct: 1798 ggagacagtccaaatttata 1817
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>emb|AL807797.10| Mouse DNA sequence from clone RP23-417D2 on chromosome X, complete
             sequence
          Length = 157222

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    tacaacaaaattatttgctt 66
             ||||||||||||||||||||
Sbjct: 54056 tacaacaaaattatttgctt 54037


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,310,639
Number of Sequences: 3902068
Number of extensions: 2310639
Number of successful extensions: 36460
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36418
Number of HSP's gapped (non-prelim): 42
length of query: 253
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 231
effective length of database: 17,147,199,772
effective search space: 3961003147332
effective search space used: 3961003147332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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