ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28k03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
2dbj|AP006616.2| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
3dbj|AK069288.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
4gb|AC034200.6|AC034200 Homo sapiens chromosome 5 clone CTB-135C1... 46 0.12
5gb|AC091393.3| Homo sapiens chromosome 5 clone CTC-571O20, compl... 46 0.12
6ref|XM_477500.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.47
7emb|CR385386.1| Gallus gallus finished cDNA, clone ChEST605l4 44 0.47
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.47
9dbj|AP005106.6| Oryza sativa (japonica cultivar-group) genomic D... 44 0.47
10emb|AL929246.7| Mouse DNA sequence from clone RP23-34J8 on chrom... 44 0.47
11gb|AC161509.8| Mus musculus chromosome 7, clone RP23-53O17, comp... 42 1.8
12emb|AL592402.12| Human DNA sequence from clone RP11-554K11 on ch... 42 1.8
13gb|AC104256.7| Homo sapiens chromosome 8, clone CTD-2384G12, com... 42 1.8
14emb|CR376737.4| Zebrafish DNA sequence from clone CH211-14G13 in... 42 1.8
15gb|AC020632.16| Homo sapiens 3 BAC RP11-333H9 (Roswell Park Canc... 42 1.8
16ref|XM_309113.2| Anopheles gambiae str. PEST ENSANGP00000020537 ... 42 1.8
17gb|AC102117.13| Mus musculus chromosome 7, clone RP23-154P9, com... 42 1.8
18gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 7.3
19ref|XM_512304.1| PREDICTED: Pan troglodytes similar to hypotheti... 40 7.3
20gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold 40 7.3
21gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 7.3
22gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 7.3
23ref|NM_020175.1| Homo sapiens dihydrouridine synthase 3-like (S.... 40 7.3
24gb|AC121546.13| Mus musculus chromosome 6, clone RP24-537N12, co... 40 7.3
25gb|AC122541.3| Mus musculus BAC clone RP24-567D4 from chromosome... 40 7.3
26gb|AC138679.10| Mus musculus chromosome 5, clone RP23-177I4, com... 40 7.3
27ref|XM_804176.1| Trypanosoma cruzi strain CL Brener heat shock p... 40 7.3
28gb|AC125524.4| Mus musculus BAC clone RP24-378N16 from chromosom... 40 7.3
29ref|XM_812539.1| Trypanosoma cruzi strain CL Brener heat shock p... 40 7.3
30gb|AC093376.5| Homo sapiens BAC clone RP11-147A22 from 7, comple... 40 7.3
31emb|Z97180.1|HS203P18 Human DNA sequence from clone RP1-203P18 o... 40 7.3
32emb|AL445213.11| Human DNA sequence from clone RP13-52K8 on chro... 40 7.3
33ref|XM_501302.1| Yarrowia lipolytica CLIB122, YALI0C00825g predi... 40 7.3
34emb|AL365366.20| Human DNA sequence from clone RP11-553N16 on ch... 40 7.3
35emb|AL138837.12| Human DNA sequence from clone RP1-149P10 on chr... 40 7.3
36gb|AC096310.9| Rattus norvegicus 1 BAC CH230-121B19 (Children's ... 40 7.3
37emb|BX012398.1|CNS08HQA Single read from an extremity of a full-... 40 7.3
38emb|BX927163.31| Zebrafish DNA sequence from clone DKEY-126A1 in... 40 7.3
39emb|BX546480.9| Zebrafish DNA sequence from clone DKEY-175C11, c... 40 7.3
40gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 7.3
41gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 7.3
42gb|AC011499.5| Homo sapiens chromosome 19 clone CTB-54O9, comple... 40 7.3
43ref|NM_182605.1| Homo sapiens hypothetical protein FLJ40448 (FLJ... 40 7.3
44dbj|AK097767.1| Homo sapiens cDNA FLJ40448 fis, clone TESTI2040815 40 7.3
45emb|CR598491.1| full-length cDNA clone CS0DC001YG03 of Neuroblas... 40 7.3
46dbj|AK023958.1| Homo sapiens cDNA FLJ13896 fis, clone THYRO10017... 40 7.3
47emb|CR523977.1| Gallus gallus finished cDNA, clone ChEST704j19 40 7.3
48gb|DP000004.1| Lemur catta target 1 genomic scaffold 40 7.3
49gb|AC034232.8| Homo sapiens chromosome 5 clone CTD-2233C11, comp... 40 7.3
50gb|AC147583.3| Otolemur garnettii clone CH256-410D4, complete se... 40 7.3
51gb|AC129342.5| Rattus norvegicus BAC CH230-229B21 (Children's H... 40 7.3
52gb|AC147580.3| Otolemur garnettii clone CH256-323C23, complete s... 40 7.3
53gb|BC008362.1| Homo sapiens dihydrouridine synthase 3-like (S. c... 40 7.3
54gb|BC009973.1| Homo sapiens dihydrouridine synthase 3-like (S. c... 40 7.3
55gb|AC096733.3| Homo sapiens BAC clone RP11-102N12 from 4, comple... 40 7.3
56gb|AC010980.8| Homo sapiens BAC clone RP11-384O8 from 2, complet... 40 7.3
57gb|AC138028.1| Homo sapiens chromosome 16 clone RP5-1142A6, comp... 40 7.3
58gb|AC123544.4| Lemur catta clone LB2-246N5, complete sequence 40 7.3
59emb|AL109955.38|HSJ800J21 Human DNA sequence from clone RP4-800J... 40 7.3
60emb|Z74269.1|SCYDL221W S.cerevisiae chromosome IV reading frame ... 40 7.3
61emb|AL365411.1|IR1967720 Homo sapiens mRNA full length insert cD... 40 7.3
62gb|BC111769.1| Homo sapiens hypothetical protein FLJ40448, mRNA ... 40 7.3
63emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 7.3
64gb|M76550.1|YSCCDC13 Saccharomyces cerevisiae cell division cycl... 40 7.3
65emb|AL732433.7| Mouse DNA sequence from clone RP23-349N21 on chr... 40 7.3
66dbj|AB050420.1| Macaca fascicularis brain cDNA, clone:QnpA-21290 40 7.3 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                                
Query: 436      gcggccttctccatctcagggacagtgccattagcaggggcgtccttg 483
                ||||||||||||||||| || ||| ||||||| |||| ||||||||||
Sbjct: 30692885 gcggccttctccatctctggaacactgccattggcagaggcgtccttg 30692932
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>dbj|AP006616.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1206D04
          Length = 130176

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                             
Query: 436   gcggccttctccatctcagggacagtgccattagcaggggcgtccttg 483
             ||||||||||||||||| || ||| ||||||| |||| ||||||||||
Sbjct: 95541 gcggccttctccatctctggaacactgccattggcagaggcgtccttg 95588
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>dbj|AK069288.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014P04, full
           insert sequence
          Length = 1305

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 436 gcggccttctccatctcagggacagtgccattagcaggggcgtccttg 483
           ||||||||||||||||| || ||| ||||||| |||| ||||||||||
Sbjct: 952 gcggccttctccatctctggaacactgccattggcagaggcgtccttg 905
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>gb|AC034200.6|AC034200 Homo sapiens chromosome 5 clone CTB-135C10, complete sequence
          Length = 143084

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 409    gctgcctcgggggcagcggcagc 431
              |||||||||||||||||||||||
Sbjct: 108504 gctgcctcgggggcagcggcagc 108482
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>gb|AC091393.3| Homo sapiens chromosome 5 clone CTC-571O20, complete sequence
          Length = 217781

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 409   gctgcctcgggggcagcggcagc 431
             |||||||||||||||||||||||
Sbjct: 77051 gctgcctcgggggcagcggcagc 77029
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>ref|XM_477500.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 996

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 419 gggcagcggcagcgggtgcggc 440
           ||||||||||||||||||||||
Sbjct: 294 gggcagcggcagcgggtgcggc 273
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>emb|CR385386.1| Gallus gallus finished cDNA, clone ChEST605l4
          Length = 1008

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 416 cgggggcagcggcagcgggtgc 437
           ||||||||||||||||||||||
Sbjct: 61  cgggggcagcggcagcgggtgc 82
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 419      gggcagcggcagcgggtgcggc 440
                ||||||||||||||||||||||
Sbjct: 11004971 gggcagcggcagcgggtgcggc 11004992
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>dbj|AP005106.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0091I19
          Length = 126544

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 419   gggcagcggcagcgggtgcggc 440
             ||||||||||||||||||||||
Sbjct: 66914 gggcagcggcagcgggtgcggc 66935
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>emb|AL929246.7| Mouse DNA sequence from clone RP23-34J8 on chromosome 2, complete
            sequence
          Length = 142905

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 288  catctctcctggaacaactctactgacacccaaa 321
            |||||| |||||||||| || |||||||||||||
Sbjct: 3737 catctcccctggaacaattccactgacacccaaa 3704
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>gb|AC161509.8| Mus musculus chromosome 7, clone RP23-53O17, complete sequence
          Length = 196638

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 442   ttctccatctcagggacagtg 462
             |||||||||||||||||||||
Sbjct: 26091 ttctccatctcagggacagtg 26071
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>emb|AL592402.12| Human DNA sequence from clone RP11-554K11 on chromosome 1 Contains a
             processed pseudogene similar to ribosomal protein L31
             (RPL31), complete sequence
          Length = 200461

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 389   cagctggtggtgcaggagctg 409
             |||||||||||||||||||||
Sbjct: 39028 cagctggtggtgcaggagctg 39048
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>gb|AC104256.7| Homo sapiens chromosome 8, clone CTD-2384G12, complete sequence
          Length = 135880

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 31    ataaatatacaaacacataca 51
             |||||||||||||||||||||
Sbjct: 51528 ataaatatacaaacacataca 51548
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>emb|CR376737.4| Zebrafish DNA sequence from clone CH211-14G13 in linkage group 24,
             complete sequence
          Length = 158366

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 32    taaatatacaaacacatacagtagcagca 60
             |||||||| ||| ||||||||||||||||
Sbjct: 45973 taaatatataaaaacatacagtagcagca 45945
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>gb|AC020632.16| Homo sapiens 3 BAC RP11-333H9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 162029

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 35     atatacaaacacatacagtag 55
              |||||||||||||||||||||
Sbjct: 152830 atatacaaacacatacagtag 152810
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>ref|XM_309113.2| Anopheles gambiae str. PEST ENSANGP00000020537
           (ENSANGG00000018048), partial mRNA
          Length = 4218

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 389 cagctggtggtgcaggagctgctgc 413
           |||||||||||||||| ||||||||
Sbjct: 117 cagctggtggtgcaggtgctgctgc 93
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>gb|AC102117.13| Mus musculus chromosome 7, clone RP23-154P9, complete sequence
          Length = 196717

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 442    ttctccatctcagggacagtg 462
              |||||||||||||||||||||
Sbjct: 126987 ttctccatctcagggacagtg 126967
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 486   agcaggtgtcgctgcagcct 505
             ||||||||||||||||||||
Sbjct: 41026 agcaggtgtcgctgcagcct 41007
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>ref|XM_512304.1| PREDICTED: Pan troglodytes similar to hypothetical protein from
           EUROIMAGE 1967720 (LOC455626), mRNA
          Length = 1488

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 413 cctcgggggcagcggcagcgggtg 436
           |||||||| |||||||||||||||
Sbjct: 817 cctcggggacagcggcagcgggtg 794
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>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold
          Length = 1743090

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 21      acacttgatgataaatatac 40
               ||||||||||||||||||||
Sbjct: 1068352 acacttgatgataaatatac 1068333
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 32     taaatatacaaacacatacagtag 55
              |||||||||||||||||| |||||
Sbjct: 368330 taaatatacaaacacatatagtag 368353
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 417    gggggcagcggcagcgggtg 436
              ||||||||||||||||||||
Sbjct: 106030 gggggcagcggcagcgggtg 106049
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>ref|NM_020175.1| Homo sapiens dihydrouridine synthase 3-like (S. cerevisiae)
           (DUS3L), mRNA
          Length = 2078

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 413 cctcgggggcagcggcagcgggtg 436
           |||||||| |||||||||||||||
Sbjct: 790 cctcggggacagcggcagcgggtg 767
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>gb|AC121546.13| Mus musculus chromosome 6, clone RP24-537N12, complete sequence
          Length = 207556

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     cagcaacagccttaccttat 75
              ||||||||||||||||||||
Sbjct: 202423 cagcaacagccttaccttat 202404
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>gb|AC122541.3| Mus musculus BAC clone RP24-567D4 from chromosome 5, complete sequence
          Length = 166883

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 485    cagcaggtgtcgctgcagcc 504
              ||||||||||||||||||||
Sbjct: 129796 cagcaggtgtcgctgcagcc 129815
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>gb|AC138679.10| Mus musculus chromosome 5, clone RP23-177I4, complete sequence
          Length = 230184

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 485    cagcaggtgtcgctgcagcc 504
              ||||||||||||||||||||
Sbjct: 225236 cagcaggtgtcgctgcagcc 225217
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>ref|XM_804176.1| Trypanosoma cruzi strain CL Brener heat shock protein-like protein
           (Tc00.1047053508443.20) partial mRNA
          Length = 960

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 393 tggtggtgcaggagctgctgcctc 416
           ||||||||| ||||||||||||||
Sbjct: 638 tggtggtgctggagctgctgcctc 661
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>gb|AC125524.4| Mus musculus BAC clone RP24-378N16 from chromosome 6, complete sequence
          Length = 175917

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     cagcaacagccttaccttat 75
              ||||||||||||||||||||
Sbjct: 173343 cagcaacagccttaccttat 173362
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>ref|XM_812539.1| Trypanosoma cruzi strain CL Brener heat shock protein-like protein
           (Tc00.1047053509157.80) partial mRNA
          Length = 960

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 393 tggtggtgcaggagctgctgcctc 416
           ||||||||| ||||||||||||||
Sbjct: 638 tggtggtgctggagctgctgcctc 661
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>gb|AC093376.5| Homo sapiens BAC clone RP11-147A22 from 7, complete sequence
          Length = 176162

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    accagtcccctctttccctc 99
             ||||||||||||||||||||
Sbjct: 35242 accagtcccctctttccctc 35223
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>emb|Z97180.1|HS203P18 Human DNA sequence from clone RP1-203P18 on chromosome Xq27.1-27.3
             Contains a novel pseudogene and a CpG island, complete
             sequence
          Length = 132470

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    ataaatatacaaacacatac 50
             ||||||||||||||||||||
Sbjct: 85973 ataaatatacaaacacatac 85954
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>emb|AL445213.11| Human DNA sequence from clone RP13-52K8 on chromosome X Contains a
             pseudogene similar to part of SLC9A2 (solute carrier
             family 9 (sodium/hydrogen exchanger), isoform 2), complete
             sequence
          Length = 190604

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 167   aataacaaactcaaattaataata 190
             ||||| ||||||||||||||||||
Sbjct: 37377 aataaaaaactcaaattaataata 37354
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>ref|XM_501302.1| Yarrowia lipolytica CLIB122, YALI0C00825g predicted mRNA
          Length = 1422

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 385 ggctcagctggtggtgcagg 404
           ||||||||||||||||||||
Sbjct: 331 ggctcagctggtggtgcagg 312
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>emb|AL365366.20| Human DNA sequence from clone RP11-553N16 on chromosome 1 Contains the
             3' end of the gene for a novel protein (FLJ16613), a
             ribosomal protein L6 (RPL6) pseudogene, the EXO1 gene for
             exonuclease 1, the 5' end of a ribosomal protein L23a
             (RPL23a) pseudogene and a CpG island, complete sequence
          Length = 143967

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 442   ttctccatctcagggacagtgcca 465
             |||||||||||| |||||||||||
Sbjct: 15699 ttctccatctcaaggacagtgcca 15676
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>emb|AL138837.12| Human DNA sequence from clone RP1-149P10 on chromosome 1 Contains the
             5' end of a variant of the PHC2 gene for polyhomeotic-like
             2 (Drosophila) and the 5' end of the ZNF31 gene for zinc
             finger protein 31 (KOX 29), complete sequence
          Length = 98873

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 396   tggtgcaggagctgctgcct 415
             ||||||||||||||||||||
Sbjct: 79727 tggtgcaggagctgctgcct 79746
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>gb|AC096310.9| Rattus norvegicus 1 BAC CH230-121B19 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 218258

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 16    aatccacacttgatgataaatatacaaa 43
             |||| ||||||||| |||||||||||||
Sbjct: 75447 aatcaacacttgattataaatatacaaa 75474
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>emb|BX012398.1|CNS08HQA Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA19CG08 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 976

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 457 acagtgccattagcaggggc 476
           ||||||||||||||||||||
Sbjct: 431 acagtgccattagcaggggc 450
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>emb|BX927163.31| Zebrafish DNA sequence from clone DKEY-126A1 in linkage group 22,
             complete sequence
          Length = 157294

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   ctccttccccatccatctct 294
             ||||||||||||||||||||
Sbjct: 33189 ctccttccccatccatctct 33170
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>emb|BX546480.9| Zebrafish DNA sequence from clone DKEY-175C11, complete sequence
          Length = 203056

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     cttaccttattcttaccagt 85
              ||||||||||||||||||||
Sbjct: 199393 cttaccttattcttaccagt 199374
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 417    gggggcagcggcagcgggtg 436
              ||||||||||||||||||||
Sbjct: 247518 gggggcagcggcagcgggtg 247499
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 414     ctcgggggcagcggcagcgg 433
               ||||||||||||||||||||
Sbjct: 2643414 ctcgggggcagcggcagcgg 2643433



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 417    gggggcagcggcagcgggtg 436
              ||||||||||||||||||||
Sbjct: 484530 gggggcagcggcagcgggtg 484511
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>gb|AC011499.5| Homo sapiens chromosome 19 clone CTB-54O9, complete sequence
          Length = 199776

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 413    cctcgggggcagcggcagcgggtg 436
              |||||||| |||||||||||||||
Sbjct: 162742 cctcggggacagcggcagcgggtg 162765
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>ref|NM_182605.1| Homo sapiens hypothetical protein FLJ40448 (FLJ40448), mRNA
          Length = 2140

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 391 gctggtggtgcaggagctgctgcc 414
           |||||||||||||||| |||||||
Sbjct: 655 gctggtggtgcaggagttgctgcc 632
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>dbj|AK097767.1| Homo sapiens cDNA FLJ40448 fis, clone TESTI2040815
          Length = 2140

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 391 gctggtggtgcaggagctgctgcc 414
           |||||||||||||||| |||||||
Sbjct: 655 gctggtggtgcaggagttgctgcc 632
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>emb|CR598491.1| full-length cDNA clone CS0DC001YG03 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1818

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 413 cctcgggggcagcggcagcgggtg 436
           |||||||| |||||||||||||||
Sbjct: 749 cctcggggacagcggcagcgggtg 726
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>dbj|AK023958.1| Homo sapiens cDNA FLJ13896 fis, clone THYRO1001703, weakly similar
           to NIFR3-LIKE PROTEIN
          Length = 2034

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 413 cctcgggggcagcggcagcgggtg 436
           |||||||| |||||||||||||||
Sbjct: 764 cctcggggacagcggcagcgggtg 741
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>emb|CR523977.1| Gallus gallus finished cDNA, clone ChEST704j19
          Length = 1206

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 20  cacacttgatgataaatatacaaa 43
           |||||||||| |||||||||||||
Sbjct: 272 cacacttgattataaatatacaaa 249
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>gb|DP000004.1| Lemur catta target 1 genomic scaffold
          Length = 1399362

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     acacttgatgataaatatac 40
              ||||||||||||||||||||
Sbjct: 862469 acacttgatgataaatatac 862450
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>gb|AC034232.8| Homo sapiens chromosome 5 clone CTD-2233C11, complete sequence
          Length = 108892

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 87    ccctctttccctctacaaaatgcaatga 114
             |||||||||||||||||| |||| ||||
Sbjct: 98273 ccctctttccctctacaacatgctatga 98300
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>gb|AC147583.3| Otolemur garnettii clone CH256-410D4, complete sequence
          Length = 144487

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    acacttgatgataaatatac 40
             ||||||||||||||||||||
Sbjct: 31537 acacttgatgataaatatac 31518
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>gb|AC129342.5| Rattus norvegicus  BAC CH230-229B21 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 224257

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   agtaacaaccctcctgctca 165
             ||||||||||||||||||||
Sbjct: 33948 agtaacaaccctcctgctca 33967
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>gb|AC147580.3| Otolemur garnettii clone CH256-323C23, complete sequence
          Length = 184036

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     acacttgatgataaatatac 40
              ||||||||||||||||||||
Sbjct: 182242 acacttgatgataaatatac 182223
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>gb|BC008362.1| Homo sapiens dihydrouridine synthase 3-like (S. cerevisiae), mRNA
           (cDNA clone IMAGE:3611486), partial cds
          Length = 1932

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 413 cctcgggggcagcggcagcgggtg 436
           |||||||| |||||||||||||||
Sbjct: 633 cctcggggacagcggcagcgggtg 610
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>gb|BC009973.1| Homo sapiens dihydrouridine synthase 3-like (S. cerevisiae), mRNA
           (cDNA clone MGC:14981 IMAGE:4303655), complete cds
          Length = 2078

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 413 cctcgggggcagcggcagcgggtg 436
           |||||||| |||||||||||||||
Sbjct: 790 cctcggggacagcggcagcgggtg 767
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>gb|AC096733.3| Homo sapiens BAC clone RP11-102N12 from 4, complete sequence
          Length = 189031

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 30    gataaatatacaaacacatacagt 53
             |||||||||||||| |||||||||
Sbjct: 77232 gataaatatacaaagacatacagt 77209
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>gb|AC010980.8| Homo sapiens BAC clone RP11-384O8 from 2, complete sequence
          Length = 171374

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   atctctcctggaacaactct 308
             ||||||||||||||||||||
Sbjct: 25922 atctctcctggaacaactct 25903
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>gb|AC138028.1| Homo sapiens chromosome 16 clone RP5-1142A6, complete sequence
          Length = 127698

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 391   gctggtggtgcaggagctgctgcc 414
             |||||||||||||||| |||||||
Sbjct: 35258 gctggtggtgcaggagttgctgcc 35281
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>gb|AC123544.4| Lemur catta clone LB2-246N5, complete sequence
          Length = 195323

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    acacttgatgataaatatac 40
             ||||||||||||||||||||
Sbjct: 47208 acacttgatgataaatatac 47189
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>emb|AL109955.38|HSJ800J21 Human DNA sequence from clone RP4-800J21 on chromosome 20, complete
              sequence
          Length = 108458

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 356    aagccaccttcgttcaggca 375
              ||||||||||||||||||||
Sbjct: 102432 aagccaccttcgttcaggca 102413
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>emb|Z74269.1|SCYDL221W S.cerevisiae chromosome IV reading frame ORF YDL221w
          Length = 3440

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 75  ttcttaccagtcccctctttccct 98
           ||||||||| ||||||||||||||
Sbjct: 282 ttcttaccactcccctctttccct 305
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>emb|AL365411.1|IR1967720 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 1967720
          Length = 2205

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 413 cctcgggggcagcggcagcgggtg 436
           |||||||| |||||||||||||||
Sbjct: 693 cctcggggacagcggcagcgggtg 670
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>gb|BC111769.1| Homo sapiens hypothetical protein FLJ40448, mRNA (cDNA clone
           MGC:133175 IMAGE:40025355), complete cds
          Length = 1903

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 391 gctggtggtgcaggagctgctgcc 414
           |||||||||||||||| |||||||
Sbjct: 601 gctggtggtgcaggagttgctgcc 578
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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 385    ggctcagctggtggtgcagg 404
              ||||||||||||||||||||
Sbjct: 110193 ggctcagctggtggtgcagg 110174
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>gb|M76550.1|YSCCDC13 Saccharomyces cerevisiae cell division cycle protein (CDC13) gene,
            complete cds
          Length = 3600

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 75   ttcttaccagtcccctctttccct 98
            ||||||||| ||||||||||||||
Sbjct: 3321 ttcttaccactcccctctttccct 3298
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>emb|AL732433.7| Mouse DNA sequence from clone RP23-349N21 on chromosome X, complete
             sequence
          Length = 196655

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   cataataacaaactcaaatt 183
             ||||||||||||||||||||
Sbjct: 76886 cataataacaaactcaaatt 76905
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>dbj|AB050420.1| Macaca fascicularis brain cDNA, clone:QnpA-21290
          Length = 1633

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 20  cacacttgatgataaatatacaaacacataca 51
           |||| ||||||| | |||||||||||||||||
Sbjct: 583 cacatttgatgacatatatacaaacacataca 614


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,405,675
Number of Sequences: 3902068
Number of extensions: 5405675
Number of successful extensions: 118824
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118490
Number of HSP's gapped (non-prelim): 334
length of query: 539
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 516
effective length of database: 17,143,297,704
effective search space: 8845941615264
effective search space used: 8845941615264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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