ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags28k01 |
|---|---|
| Clone Library Name | barley_pub |
>RL21_ARATH (Q43291) 60S ribosomal protein L21| Length = 164 Score = 180 bits (456), Expect = 2e-45 Identities = 86/99 (86%), Positives = 92/99 (92%) Frame = -3 Query: 517 NVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAKARGEV 338 NVTKRA+GVE+NKQ+GNRIIRKRIHVRVEHVQ SRCAEEF+LRK KND+LKA AKA GE Sbjct: 66 NVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGET 125 Query: 337 ISTKRQPLGPKPGFMVEGTTIETVTPIPYDVVNDLKGGY 221 ISTKRQP GPKPGFMVEG T+ETVTPIPYDVVNDLKGGY Sbjct: 126 ISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164
>RL21B_YEAST (Q12672) 60S ribosomal protein L21-B| Length = 160 Score = 88.2 bits (217), Expect = 1e-17 Identities = 43/92 (46%), Positives = 62/92 (67%), Gaps = 2/92 (2%) Frame = -3 Query: 517 NVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAKARGEV 338 NVTK ++GV INK VGNR + KR+++RVEH++ S+C +EF R N +AEAKA+G Sbjct: 66 NVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQGVA 125 Query: 337 ISTKRQPLGPKPGFMV--EGTTIETVTPIPYD 248 + KRQP P+ +V EG +T+ P+PY+ Sbjct: 126 VQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157
>RL21A_YEAST (Q02753) 60S ribosomal protein L21-A| Length = 160 Score = 88.2 bits (217), Expect = 1e-17 Identities = 43/92 (46%), Positives = 62/92 (67%), Gaps = 2/92 (2%) Frame = -3 Query: 517 NVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAKARGEV 338 NVTK ++GV INK VGNR + KR+++RVEH++ S+C +EF R N +AEAKA+G Sbjct: 66 NVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQGVA 125 Query: 337 ISTKRQPLGPKPGFMV--EGTTIETVTPIPYD 248 + KRQP P+ +V EG +T+ P+PY+ Sbjct: 126 VQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157
>RL21_CYAPA (O82574) 60S ribosomal protein L21| Length = 161 Score = 87.8 bits (216), Expect = 2e-17 Identities = 49/93 (52%), Positives = 66/93 (70%), Gaps = 3/93 (3%) Frame = -3 Query: 517 NVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK-ARGE 341 NVTKRAIGVEINK+V +RII+KRIHVR++HV+ S C + F R +ND++K +A A+ Sbjct: 66 NVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAHVAKLP 125 Query: 340 VISTKRQPLGPKPGFMV--EGTTIETVTPIPYD 248 V STKR P+ PK G ++ +G ET IPY+ Sbjct: 126 VPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158
>RL21_HUMAN (P46778) 60S ribosomal protein L21| Length = 159 Score = 80.5 bits (197), Expect = 3e-15 Identities = 40/92 (43%), Positives = 58/92 (63%), Gaps = 2/92 (2%) Frame = -3 Query: 517 NVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAKARGEV 338 NVT+ A+G+ +NKQV +I+ KRI+VR+EH++ S+ + F R +NDQ K EAK +G Sbjct: 65 NVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTW 124 Query: 337 ISTKRQPLGPKPGFMV--EGTTIETVTPIPYD 248 + KRQP P+ V G E + PIPY+ Sbjct: 125 VQLKRQPAPPREAHFVRTNGKEPELLEPIPYE 156
>RL21_CHILA (Q6QN05) 60S ribosomal protein L21| Length = 159 Score = 80.5 bits (197), Expect = 3e-15 Identities = 40/92 (43%), Positives = 58/92 (63%), Gaps = 2/92 (2%) Frame = -3 Query: 517 NVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAKARGEV 338 NVT+ A+G+ +NKQV +I+ KRI+VR+EH++ S+ + F R +NDQ K EAK +G Sbjct: 65 NVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTW 124 Query: 337 ISTKRQPLGPKPGFMV--EGTTIETVTPIPYD 248 + KRQP P+ V G E + PIPY+ Sbjct: 125 VQLKRQPAPPREAHFVRTNGKEPELLEPIPYE 156
>RL21B_SCHPO (O42706) 60S ribosomal protein L21-B| Length = 160 Score = 76.3 bits (186), Expect = 5e-14 Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 2/92 (2%) Frame = -3 Query: 517 NVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAKARGEV 338 NVT+ ++GV I K VGNR + KR++VR+EHV+ S+C ++F R N+ + EAKA+G+ Sbjct: 66 NVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKT 125 Query: 337 ISTKRQPLGPKPGFMVEGTTIETVT--PIPYD 248 + +RQP P V E VT P+ YD Sbjct: 126 VQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157
>RL21A_SCHPO (Q9UUC1) 60S ribosomal protein L21-A| Length = 160 Score = 76.3 bits (186), Expect = 5e-14 Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 2/92 (2%) Frame = -3 Query: 517 NVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAKARGEV 338 NVT+ ++GV I K VGNR + KR++VR+EHV+ S+C ++F R N+ + EAKA+G+ Sbjct: 66 NVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKT 125 Query: 337 ISTKRQPLGPKPGFMVEGTTIETVT--PIPYD 248 + +RQP P V E VT P+ YD Sbjct: 126 VQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157
>RL21_RAT (P20280) 60S ribosomal protein L21| Length = 159 Score = 75.5 bits (184), Expect = 8e-14 Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 2/92 (2%) Frame = -3 Query: 517 NVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAKARGEV 338 NVT+ A+G+ +NKQV +I+ KRI+VR+EH++ S+ + F R +NDQ K EAK +G Sbjct: 65 NVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTW 124 Query: 337 ISTKRQPLGPKPGFMV--EGTTIETVTPIPYD 248 + QP P+ V G E + PIPY+ Sbjct: 125 VQLNGQPAPPREAHFVRTNGKEPELLEPIPYE 156
>RL21_MOUSE (O09167) 60S ribosomal protein L21| Length = 159 Score = 75.1 bits (183), Expect = 1e-13 Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 2/92 (2%) Frame = -3 Query: 517 NVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAKARGEV 338 NVT+ A+G+ +NKQV +I+ KRI+VR+EH++ S+ + F R +NDQ K EAK +G Sbjct: 65 NVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTW 124 Query: 337 ISTKRQPLGPKPGFMV--EGTTIETVTPIPYD 248 + KR P+ V G E + PIPY+ Sbjct: 125 VQLKRHAAPPREAHFVRTNGKEPELLEPIPYE 156
>RL21_PYUST (P49667) 60S ribosomal protein L21 (Fragment)| Length = 155 Score = 72.8 bits (177), Expect = 5e-13 Identities = 38/91 (41%), Positives = 58/91 (63%), Gaps = 1/91 (1%) Frame = -3 Query: 517 NVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAKARGEV 338 NVT+ A+G+ +NKQV RII KRI+VR+EH++ S+ F R +N++ + EA+ + Sbjct: 64 NVTQHAVGIIVNKQVRGRIIAKRINVRIEHIKHSKSRISFIQRVHENERKRKEAREKKIR 123 Query: 337 ISTKRQPLGPKPGFMVEGTT-IETVTPIPYD 248 ++ KRQP P+ G V + E V PIPY+ Sbjct: 124 VNLKRQPQQPRTGHFVRSSAEPELVEPIPYE 154
>RL21_CAEEL (P34334) 60S ribosomal protein L21| Length = 160 Score = 69.3 bits (168), Expect = 6e-12 Identities = 34/95 (35%), Positives = 60/95 (63%), Gaps = 3/95 (3%) Frame = -3 Query: 517 NVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAKARGE- 341 NVT+ A+G+ +NK+V I+ KRI++R+EH++PS+C +F R ND+ + AK+ G+ Sbjct: 65 NVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQP 124 Query: 340 VISTKRQPLGPKPGFMV--EGTTIETVTPIPYDVV 242 V + KR P+ P+ V + E + P+ +++V Sbjct: 125 VPALKRLPVAPRGAHTVTTQNNEPELLAPLRFEIV 159
>RL21_ENTHI (P38653) 60S ribosomal protein L21| Length = 166 Score = 68.6 bits (166), Expect = 1e-11 Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 9/99 (9%) Frame = -3 Query: 517 NVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKV-------KNDQLKAE 359 NV AIGV +NK+V NRI+ KR+H+ EH++PS C ++F RK +N QLK E Sbjct: 66 NVNPHAIGVMVNKKVNNRIVVKRLHISPEHIRPSGCQKDFLERKAAVAAIRKQNIQLKKE 125 Query: 358 AKARGEVISTKRQPLGPKPGFMVEGTTIE--TVTPIPYD 248 K + KR P P+P +++G I+ TV P+ ++ Sbjct: 126 GKPL-LPLPAKRLPKQPRPAELIKGADIKFTTVAPLKFE 163
>RL21_ENCCU (Q8SRW8) 60S ribosomal protein L21| Length = 160 Score = 50.4 bits (119), Expect = 3e-06 Identities = 26/72 (36%), Positives = 49/72 (68%), Gaps = 1/72 (1%) Frame = -3 Query: 517 NVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAKARGEV 338 +V R++ V + K+V + + K+I VR+EHV+ SRC+EE + R + ++ +A++RG V Sbjct: 65 DVKPRSLNVALYKRVRGKYVIKKIIVRIEHVRKSRCSEESQKRILMAAEMARDAESRGVV 124 Query: 337 IS-TKRQPLGPK 305 ++ +KR+ GP+ Sbjct: 125 LAPSKRKIEGPR 136
>ZN691_MOUSE (Q3TDE8) Zinc finger protein 691| Length = 283 Score = 31.2 bits (69), Expect = 1.8 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -3 Query: 469 NRIIRKRIHVRVEHVQPSRCAEEFRLR 389 NRI +RIH+ +H Q ++C E FR R Sbjct: 125 NRIRHERIHLEEKHYQCAKCQESFRRR 151
>KIF1C_HUMAN (O43896) Kinesin-like protein KIF1C| Length = 1103 Score = 30.0 bits (66), Expect = 4.0 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = -1 Query: 330 PRGSHSALNPGSWSRVPQSRPSLPFLMMWSMISRVV 223 P GS +A R+P +RP P L W +SR++ Sbjct: 893 PEGSEAAEEAAPSDRMPSARPPSPPLSSWERVSRLM 928
>HN_PI3HU (P12563) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 5.2 Identities = 17/71 (23%), Positives = 29/71 (40%) Frame = -3 Query: 433 EHVQPSRCAEEFRLRKVKNDQLKAEAKARGEVISTKRQPLGPKPGFMVEGTTIETVTPIP 254 + V P R + ++ + D ++ T + L P PG + TT++ P Sbjct: 135 QEVPPQRITHDVGIKPLNPDDFWRCTSGLPSLMKTPKIRLMPGPGLLTMPTTVDGCVRTP 194 Query: 253 YDVVNDLKGGY 221 V+NDL Y Sbjct: 195 SLVINDLIYAY 205
>HN_PI3HA (P12561) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 5.2 Identities = 17/71 (23%), Positives = 29/71 (40%) Frame = -3 Query: 433 EHVQPSRCAEEFRLRKVKNDQLKAEAKARGEVISTKRQPLGPKPGFMVEGTTIETVTPIP 254 + V P R + ++ + D ++ T + L P PG + TT++ P Sbjct: 135 QEVPPQRITHDVGIKPLNPDDFWRCTSGLPSLMKTPKIRLMPGPGLLAMPTTVDGCVRTP 194 Query: 253 YDVVNDLKGGY 221 V+NDL Y Sbjct: 195 SLVINDLIYAY 205
>HN_PI3H4 (P08492) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 5.2 Identities = 17/71 (23%), Positives = 29/71 (40%) Frame = -3 Query: 433 EHVQPSRCAEEFRLRKVKNDQLKAEAKARGEVISTKRQPLGPKPGFMVEGTTIETVTPIP 254 + V P R + ++ + D ++ T + L P PG + TT++ P Sbjct: 135 QEVPPQRITHDVGIKPLNPDDFWRCTSGLPSLMKTPKIRLMPGPGLLAMPTTVDGCVRTP 194 Query: 253 YDVVNDLKGGY 221 V+NDL Y Sbjct: 195 SLVINDLIYAY 205
>HN_PI3HW (P12565) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.3 bits (64), Expect = 6.8 Identities = 17/71 (23%), Positives = 29/71 (40%) Frame = -3 Query: 433 EHVQPSRCAEEFRLRKVKNDQLKAEAKARGEVISTKRQPLGPKPGFMVEGTTIETVTPIP 254 + V P R + ++ + D ++ T + L P PG + TT++ P Sbjct: 135 QEVLPQRITHDVGIKPLNPDDFWRCTSGLPSLMKTPKIRLMPGPGLLAMPTTVDGCVRTP 194 Query: 253 YDVVNDLKGGY 221 V+NDL Y Sbjct: 195 SLVINDLIYAY 205
>OXA11_SCHPO (O14300) Inner membrane protein oxa1-1, mitochondrial precursor| (Cytochrome oxidase biogenesis protein 1-1) (Sp1) Length = 374 Score = 29.3 bits (64), Expect = 6.8 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +3 Query: 360 SALSWSFFTFLRRNSSAHLDGCTCSTRTWILFLMMRFPTCLL 485 SA+ +SFF +R+ S +DG T W L + P C+L Sbjct: 170 SAVFFSFFYAIRKMSRLSVDGFTTGGLAWFKDLSIPDPYCIL 211
>ZN691_HUMAN (Q5VV52) Zinc finger protein 691| Length = 312 Score = 28.9 bits (63), Expect = 8.9 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -3 Query: 469 NRIIRKRIHVRVEHVQPSRCAEEFRLR 389 NRI +RIH+ +H + +C E FR R Sbjct: 157 NRIRHERIHLEEKHYKCPKCQESFRRR 183
>HN_PI3HX (P12566) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 28.9 bits (63), Expect = 8.9 Identities = 17/71 (23%), Positives = 29/71 (40%) Frame = -3 Query: 433 EHVQPSRCAEEFRLRKVKNDQLKAEAKARGEVISTKRQPLGPKPGFMVEGTTIETVTPIP 254 + V P R + ++ + D ++ T + L P PG + TT++ P Sbjct: 135 QEVPPQRIIHDVGIKPLNPDDFWRCTSGLPSLMRTPKIRLMPGPGLLAMPTTVDGCVRTP 194 Query: 253 YDVVNDLKGGY 221 V+NDL Y Sbjct: 195 SLVINDLIYAY 205
>HN_PI3HT (P12562) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 28.9 bits (63), Expect = 8.9 Identities = 17/71 (23%), Positives = 29/71 (40%) Frame = -3 Query: 433 EHVQPSRCAEEFRLRKVKNDQLKAEAKARGEVISTKRQPLGPKPGFMVEGTTIETVTPIP 254 + V P R + ++ + D ++ T + L P PG + TT++ P Sbjct: 135 QEVLPQRITHDVGIKPLNPDDFWRCTSGLPSLMKTPKIRLMPGPGLLAMPTTVDGCIRTP 194 Query: 253 YDVVNDLKGGY 221 V+NDL Y Sbjct: 195 SLVINDLIYAY 205 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,506,770 Number of Sequences: 219361 Number of extensions: 1561160 Number of successful extensions: 4515 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4352 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4515 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
