| Clone Name | rbags28j15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189935.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 432 Score = 60.0 bits (30), Expect = 3e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 183 tagcaccagcggatgtcttcccattgacggcgatgagctccgtgtc 228 |||||||| ||| |||||| |||||||||||||| ||||||||||| Sbjct: 415 tagcaccaccggttgtctttccattgacggcgataagctccgtgtc 370
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 60.0 bits (30), Expect = 3e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 183 tagcaccagcggatgtcttcccattgacggcgatgagctccgtgtc 228 |||||||| ||| |||||| |||||||||||||| ||||||||||| Sbjct: 39907688 tagcaccaccggttgtctttccattgacggcgataagctccgtgtc 39907733
>dbj|AP003433.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0004D12 Length = 138136 Score = 60.0 bits (30), Expect = 3e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 183 tagcaccagcggatgtcttcccattgacggcgatgagctccgtgtc 228 |||||||| ||| |||||| |||||||||||||| ||||||||||| Sbjct: 88396 tagcaccaccggttgtctttccattgacggcgataagctccgtgtc 88441
>dbj|AK103859.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148P20, full insert sequence Length = 713 Score = 60.0 bits (30), Expect = 3e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 183 tagcaccagcggatgtcttcccattgacggcgatgagctccgtgtc 228 |||||||| ||| |||||| |||||||||||||| ||||||||||| Sbjct: 474 tagcaccaccggttgtctttccattgacggcgataagctccgtgtc 429
>gb|AY111350.1| Zea mays CL38842_-2 mRNA sequence Length = 526 Score = 46.1 bits (23), Expect = 0.049 Identities = 38/43 (88%) Strand = Plus / Plus Query: 194 gatgtcttcccattgacggcgatgagctccgtgtcgaaaacca 236 ||||||||||| ||||||| ||| ||||||| |||||| |||| Sbjct: 320 gatgtcttcccgttgacggggataagctccgggtcgaagacca 362
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence Length = 1347793 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Plus Query: 200 ttcccattgacggcgatgagct 221 |||||||||||||||||||||| Sbjct: 44523 ttcccattgacggcgatgagct 44544
>gb|AY449658.1| Cryptococcus neoformans var. neoformans alpha-aminoadipate reductase (LYS2) gene, partial cds Length = 4235 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Plus Query: 200 ttcccattgacggcgatgagct 221 |||||||||||||||||||||| Sbjct: 2301 ttcccattgacggcgatgagct 2322
>ref|XM_571745.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7 Length = 4279 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Plus Query: 200 ttcccattgacggcgatgagct 221 |||||||||||||||||||||| Sbjct: 2372 ttcccattgacggcgatgagct 2393 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,841,932 Number of Sequences: 3902068 Number of extensions: 1841932 Number of successful extensions: 25826 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25804 Number of HSP's gapped (non-prelim): 22 length of query: 236 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 214 effective length of database: 17,147,199,772 effective search space: 3669500751208 effective search space used: 3669500751208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)